Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1870

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
1,940,537	-		Synpcc7942_1869	0.69	-2.5
1,940,548	+		Synpcc7942_1869	0.70	-1.3
1,940,553	-		Synpcc7942_1869	0.70	-1.9
1,940,556	-		Synpcc7942_1869	0.70	-2.9
1,940,575	+		Synpcc7942_1869	0.71	-1.7
1,940,596	+		Synpcc7942_1869	0.71	+0.5
1,940,596	+		Synpcc7942_1869	0.71	-1.7
1,940,598	+		Synpcc7942_1869	0.71	-1.9
1,940,598	+		Synpcc7942_1869	0.71	-1.3
1,940,630	+		Synpcc7942_1869	0.72	-0.7
1,940,640	+		Synpcc7942_1869	0.73	-2.4
1,940,648	+		Synpcc7942_1869	0.73	-3.3
1,940,697	+		Synpcc7942_1869	0.74	-3.5
1,940,707	+		Synpcc7942_1869	0.75	-1.7
1,940,736	+		Synpcc7942_1869	0.75	-2.1
1,940,797	+		Synpcc7942_1869	0.77	-2.2
1,940,838	+		Synpcc7942_1869	0.79	-1.0
1,940,848	+		Synpcc7942_1869	0.79	-3.4
1,940,848	+		Synpcc7942_1869	0.79	-3.1
1,940,848	+		Synpcc7942_1869	0.79	-2.3
1,940,908	+		Synpcc7942_1869	0.81	-1.5
1,940,916	-		Synpcc7942_1869	0.81	-3.4
1,940,916	-		Synpcc7942_1869	0.81	-2.0
1,940,921	+		Synpcc7942_1869	0.81	-0.0
1,940,921	+		Synpcc7942_1869	0.81	-2.6
1,940,942	+		Synpcc7942_1869	0.82	-4.0
1,940,942	+		Synpcc7942_1869	0.82	-1.7
1,940,967	+		Synpcc7942_1869	0.83	-1.8
1,941,021	-		Synpcc7942_1869	0.84	-3.0
1,941,055	+		Synpcc7942_1869	0.85	-4.2
1,941,055	+		Synpcc7942_1869	0.85	-1.8
1,941,074	+		Synpcc7942_1869	0.86	-2.2
1,941,074	+		Synpcc7942_1869	0.86	-3.7
1,941,082	-		Synpcc7942_1869	0.86	-0.7
1,941,099	-		Synpcc7942_1869	0.87	-2.7
1,941,114	+		Synpcc7942_1869	0.87	-1.7
1,941,119	+		Synpcc7942_1869	0.87	-3.0
1,941,129	+		Synpcc7942_1869	0.88	-1.9
1,941,153	-		Synpcc7942_1869	0.88	-1.8
1,941,171	+		Synpcc7942_1869	0.89	-4.6
1,941,171	+		Synpcc7942_1869	0.89	-3.1
1,941,171	+		Synpcc7942_1869	0.89	-1.4
1,941,172	+		Synpcc7942_1869	0.89	-2.3
1,941,179	-		Synpcc7942_1869	0.89	-4.7
1,941,193	+		Synpcc7942_1869	0.89	-1.4
1,941,193	+		Synpcc7942_1869	0.89	-2.7
1,941,198	+		Synpcc7942_1869	0.90	-4.0
1,941,201	-		Synpcc7942_1869	0.90	-3.0
1,941,201	-		Synpcc7942_1869	0.90	-3.2
1,941,201	-		Synpcc7942_1869	0.90	-1.1
1,941,204	+		Synpcc7942_1869	0.90	-1.3
1,941,234	+				-1.1
1,941,234	+				-3.2
1,941,244	+				-2.5
1,941,279	-				-1.4
1,941,359	-				-2.7
1,941,367	-				-1.8
1,941,380	-				-2.4
1,941,410	+				-1.5
1,941,445	-				-0.7
1,941,445	-				-2.6
1,941,445	-				-2.5
1,941,468	+				-3.0
1,941,468	+				-1.6
1,941,502	+				-2.6
1,941,510	+				-3.6
1,941,522	+				-1.8
1,941,522	+				-2.6
1,941,522	+				-1.0
1,941,522	+				-3.0
1,941,530	-				-2.1
1,941,530	-				-2.8
1,941,535	-				-2.1
1,941,540	-				-3.2
1,941,545	+				-2.1
1,941,545	-				-2.1
1,941,550	-				-2.8
1,941,558	-				-2.6
1,941,568	-				-2.7
1,941,576	+				-3.7
1,941,576	+				+0.6
1,941,596	+				-0.9
1,941,604	-				-1.3
1,941,606	+				-3.2
1,941,626	-				-1.5
1,941,629	+				-2.1
1,941,637	-				-2.4
1,941,639	+				-1.7
1,941,667	-		Synpcc7942_1870	0.11	-3.6
1,941,670	+		Synpcc7942_1870	0.11	-2.5
1,941,671	+		Synpcc7942_1870	0.11	-3.9
1,941,671	+		Synpcc7942_1870	0.11	-2.0
1,941,678	-		Synpcc7942_1870	0.11	-3.6
1,941,708	-		Synpcc7942_1870	0.14	-2.3
1,941,731	+		Synpcc7942_1870	0.16	-2.6
1,941,734	-		Synpcc7942_1870	0.16	-3.7
1,941,734	-		Synpcc7942_1870	0.16	-3.6
1,941,746	+		Synpcc7942_1870	0.17	-2.4
1,941,746	+		Synpcc7942_1870	0.17	-4.2
1,941,754	-		Synpcc7942_1870	0.17	-3.1
1,941,754	-		Synpcc7942_1870	0.17	-3.3
1,941,768	+		Synpcc7942_1870	0.18	-0.9
1,941,801	-		Synpcc7942_1870	0.21	-1.6
1,941,808	-		Synpcc7942_1870	0.22	-2.1
1,941,808	-		Synpcc7942_1870	0.22	-1.3
1,941,811	+		Synpcc7942_1870	0.22	-2.3
1,941,811	+		Synpcc7942_1870	0.22	-3.9
1,941,811	+		Synpcc7942_1870	0.22	-3.4
1,941,813	+		Synpcc7942_1870	0.22	-2.6
1,941,816	+		Synpcc7942_1870	0.22	-3.8
1,941,819	-		Synpcc7942_1870	0.22	-2.6
1,941,819	-		Synpcc7942_1870	0.22	-2.1
1,941,862	+		Synpcc7942_1870	0.26	-1.5
1,941,862	+		Synpcc7942_1870	0.26	-2.4
1,941,862	+		Synpcc7942_1870	0.26	-3.6
1,941,870	-		Synpcc7942_1870	0.26	-4.5
1,941,870	-		Synpcc7942_1870	0.26	-0.5
1,941,894	-		Synpcc7942_1870	0.28	-3.6
1,941,930	+		Synpcc7942_1870	0.31	-3.8
1,941,938	+		Synpcc7942_1870	0.32	-2.2
1,941,940	+		Synpcc7942_1870	0.32	-3.2
1,941,961	+		Synpcc7942_1870	0.33	-0.5
1,941,976	+		Synpcc7942_1870	0.35	-2.6
1,941,980	-		Synpcc7942_1870	0.35	-3.3
1,941,980	-		Synpcc7942_1870	0.35	+1.4
1,941,986	+		Synpcc7942_1870	0.35	-2.8
1,941,994	-		Synpcc7942_1870	0.36	-2.0
1,941,994	-		Synpcc7942_1870	0.36	-0.7
1,942,007	+		Synpcc7942_1870	0.37	-1.7
1,942,013	+		Synpcc7942_1870	0.38	-0.7
1,942,016	-		Synpcc7942_1870	0.38	-3.1
1,942,018	+		Synpcc7942_1870	0.38	-1.8
1,942,036	-		Synpcc7942_1870	0.39	-1.3
1,942,058	-		Synpcc7942_1870	0.41	-3.2
1,942,097	+		Synpcc7942_1870	0.44	-1.6
1,942,097	+		Synpcc7942_1870	0.44	-2.8
1,942,099	+		Synpcc7942_1870	0.44	-2.1
1,942,099	+		Synpcc7942_1870	0.44	-0.3
1,942,119	-		Synpcc7942_1870	0.46	-1.6
1,942,150	+		Synpcc7942_1870	0.48	-1.6
1,942,153	-		Synpcc7942_1870	0.48	-3.1
1,942,153	-		Synpcc7942_1870	0.48	-1.8
1,942,205	+		Synpcc7942_1870	0.52	-0.5
1,942,224	+		Synpcc7942_1870	0.54	-2.2
1,942,226	+		Synpcc7942_1870	0.54	-2.4
1,942,226	+		Synpcc7942_1870	0.54	-4.0
1,942,234	-		Synpcc7942_1870	0.55	-2.5
1,942,234	-		Synpcc7942_1870	0.55	-1.5
1,942,245	+		Synpcc7942_1870	0.56	-0.7
1,942,247	-		Synpcc7942_1870	0.56	-3.7
1,942,253	-		Synpcc7942_1870	0.56	-1.3
1,942,263	-		Synpcc7942_1870	0.57	-2.9
1,942,288	+		Synpcc7942_1870	0.59	-2.5
1,942,295	-				+1.1
1,942,350	+		Synpcc7942_1870	0.64	-3.2
1,942,360	+		Synpcc7942_1870	0.65	-0.2
1,942,365	+		Synpcc7942_1870	0.65	-2.5
1,942,401	+		Synpcc7942_1870	0.68	-4.5
1,942,401	+		Synpcc7942_1870	0.68	-0.9
1,942,401	+		Synpcc7942_1870	0.68	-4.0
1,942,401	+		Synpcc7942_1870	0.68	-2.0
1,942,409	-		Synpcc7942_1870	0.68	-2.3
1,942,409	-		Synpcc7942_1870	0.68	-2.8
1,942,416	+		Synpcc7942_1870	0.69	+2.3
1,942,418	+		Synpcc7942_1870	0.69	-2.1
1,942,439	+		Synpcc7942_1870	0.71	-2.8
1,942,442	-		Synpcc7942_1870	0.71	-3.4
1,942,479	-		Synpcc7942_1870	0.74	-1.9
1,942,486	+		Synpcc7942_1870	0.74	-1.4
1,942,518	+		Synpcc7942_1870	0.77	-3.0
1,942,540	-		Synpcc7942_1870	0.79	-4.2
1,942,560	+		Synpcc7942_1870	0.80	-3.3
1,942,560	+		Synpcc7942_1870	0.80	-2.5
1,942,566	+				-0.3
1,942,592	+		Synpcc7942_1870	0.83	-0.5
1,942,618	-		Synpcc7942_1870	0.85	-2.9
1,942,628	+		Synpcc7942_1870	0.85	-2.5
1,942,632	-		Synpcc7942_1870	0.86	-3.1
1,942,640	+		Synpcc7942_1870	0.86	-3.0
1,942,715	+				-0.3
1,942,785	-				-2.1
1,942,788	+				-3.1
1,942,788	+				-1.1
1,942,788	+				-3.5
1,942,823	+				-4.1
1,942,866	+				-2.7
1,942,868	+				-2.4
1,942,874	-				-2.5
1,942,891	+				-3.1
1,942,891	+				-3.3
1,942,894	-				-1.1
1,942,894	-				-1.3
1,942,899	-				-2.6
1,942,917	-				-1.5
1,942,921	-				-1.7
1,942,942	-				-2.3
1,942,947	+				-1.4
1,943,049	-				+1.0
1,943,059	+				+4.2
1,943,059	-				+5.1
1,943,328	+				+0.8
1,943,372	+		Synpcc7942_1871	0.12	+0.6
1,943,429	-		Synpcc7942_1871	0.23	-0.9
1,943,457	+		Synpcc7942_1871	0.28	-1.1
1,943,527	+		Synpcc7942_1871	0.41	-0.3
1,943,527	+		Synpcc7942_1871	0.41	+2.5
1,943,527	+		Synpcc7942_1871	0.41	+1.0
1,943,535	-		Synpcc7942_1871	0.43	-1.5
1,943,535	-		Synpcc7942_1871	0.43	-2.4
1,943,535	-		Synpcc7942_1871	0.43	-1.5
1,943,535	-		Synpcc7942_1871	0.43	+2.0
1,943,535	-		Synpcc7942_1871	0.43	-1.3
1,943,561	-		Synpcc7942_1871	0.47	+0.8
1,943,571	-		Synpcc7942_1871	0.49	-0.5
1,943,571	-		Synpcc7942_1871	0.49	+0.9
1,943,572	-		Synpcc7942_1871	0.49	-1.1
1,943,646	+		Synpcc7942_1871	0.63	-1.6
1,943,691	+		Synpcc7942_1871	0.72	-2.7