Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1650

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
1,716,796	+				+0.1
1,716,796	+				-2.7
1,716,800	+				-0.4
1,716,803	-				-1.8
1,716,804	-				-0.9
1,716,804	-				-0.6
1,716,804	-				+0.1
1,716,809	+				+0.3
1,716,817	-				+0.6
1,716,817	-				+0.8
1,716,820	+				+1.4
1,716,822	-				+0.5
1,716,825	+				+1.8
1,716,840	-				+4.0
1,716,852	-				+0.5
1,716,863	+		Synpcc7942_1649	0.10	+1.0
1,716,881	-		Synpcc7942_1649	0.13	+1.1
1,716,910	+		Synpcc7942_1649	0.17	+0.4
1,716,978	+		Synpcc7942_1649	0.26	+0.6
1,716,978	+		Synpcc7942_1649	0.26	-0.3
1,716,978	+		Synpcc7942_1649	0.26	+0.9
1,716,978	+		Synpcc7942_1649	0.26	+1.1
1,716,978	+		Synpcc7942_1649	0.26	-2.1
1,716,978	+		Synpcc7942_1649	0.26	+3.4
1,716,978	+		Synpcc7942_1649	0.26	-0.9
1,716,978	+		Synpcc7942_1649	0.26	-1.2
1,716,981	-		Synpcc7942_1649	0.27	-0.8
1,716,986	-		Synpcc7942_1649	0.28	+1.8
1,716,986	-		Synpcc7942_1649	0.28	-0.4
1,716,996	-		Synpcc7942_1649	0.29	-0.3
1,717,014	+		Synpcc7942_1649	0.32	-0.6
1,717,014	+		Synpcc7942_1649	0.32	+0.8
1,717,035	+		Synpcc7942_1649	0.34	-0.4
1,717,081	+		Synpcc7942_1649	0.41	+1.7
1,717,089	-		Synpcc7942_1649	0.42	+1.0
1,717,110	+		Synpcc7942_1649	0.45	-1.2
1,717,149	+		Synpcc7942_1649	0.50	+0.3
1,717,156	-		Synpcc7942_1649	0.51	-0.4
1,717,200	-		Synpcc7942_1649	0.57	+0.5
1,717,220	+		Synpcc7942_1649	0.60	-2.2
1,717,225	+		Synpcc7942_1649	0.61	+1.5
1,717,230	-		Synpcc7942_1649	0.62	+0.6
1,717,240	+		Synpcc7942_1649	0.63	-2.2
1,717,245	+		Synpcc7942_1649	0.64	+1.7
1,717,248	-		Synpcc7942_1649	0.64	-0.7
1,717,248	-		Synpcc7942_1649	0.64	-1.8
1,717,248	-		Synpcc7942_1649	0.64	-0.5
1,717,250	+		Synpcc7942_1649	0.64	-0.9
1,717,260	+		Synpcc7942_1649	0.66	-1.7
1,717,265	+		Synpcc7942_1649	0.67	-1.5
1,717,268	-		Synpcc7942_1649	0.67	+2.1
1,717,268	-		Synpcc7942_1649	0.67	+0.3
1,717,268	-		Synpcc7942_1649	0.67	+0.3
1,717,274	+		Synpcc7942_1649	0.68	-0.6
1,717,282	-		Synpcc7942_1649	0.69	-0.2
1,717,282	-		Synpcc7942_1649	0.69	-0.5
1,717,312	+		Synpcc7942_1649	0.73	+1.0
1,717,442	-				-0.5
1,717,484	-				-0.9
1,717,530	-				+0.7
1,717,545	-				+0.2
1,717,557	-				-1.3
1,717,593	+				+0.3
1,717,627	+				-1.4
1,717,627	+				-0.2
1,717,627	+				-0.9
1,717,635	-				-1.0
1,717,698	+				+3.9
1,717,739	+				+3.6
1,717,747	-				-1.1
1,717,773	-				-3.3
1,717,828	+				-1.6
1,717,836	-				-0.2
1,717,869	-				-2.1
1,717,889	+				-4.1
1,717,899	-				-2.6
1,717,899	-				-1.4
1,717,899	-				-1.7
1,717,907	+				-3.2
1,717,908	+				-2.2
1,717,916	-				-2.2
1,717,916	-				-0.9
1,718,030	+				-1.8
1,718,038	-		Synpcc7942_1650	0.10	-3.6
1,718,293	+		Synpcc7942_1650	0.18	-2.4
1,718,375	+		Synpcc7942_1650	0.21	-3.7
1,718,440	-		Synpcc7942_1650	0.23	-2.4
1,718,476	-		Synpcc7942_1650	0.24	-2.2
1,718,476	-		Synpcc7942_1650	0.24	-1.9
1,718,497	-		Synpcc7942_1650	0.24	-2.5
1,718,516	+		Synpcc7942_1650	0.25	+1.1
1,718,521	+		Synpcc7942_1650	0.25	-0.4
1,718,615	+		Synpcc7942_1650	0.28	-3.2
1,718,623	-		Synpcc7942_1650	0.28	-1.1
1,718,623	-		Synpcc7942_1650	0.28	-2.1
1,718,633	-		Synpcc7942_1650	0.29	-3.6
1,718,663	-		Synpcc7942_1650	0.30	-4.2
1,718,693	+		Synpcc7942_1650	0.30	+1.2
1,718,701	-		Synpcc7942_1650	0.31	+1.1
1,718,718	-				-0.9
1,718,732	-		Synpcc7942_1650	0.32	-2.0
1,718,737	-		Synpcc7942_1650	0.32	-2.9
1,718,754	-		Synpcc7942_1650	0.32	-0.4
1,718,764	+		Synpcc7942_1650	0.33	-3.4
1,718,767	+		Synpcc7942_1650	0.33	-4.0
1,718,767	+		Synpcc7942_1650	0.33	-0.1
1,718,767	+		Synpcc7942_1650	0.33	-2.1
1,718,775	-		Synpcc7942_1650	0.33	+0.1
1,718,775	-		Synpcc7942_1650	0.33	-1.5
1,718,775	-		Synpcc7942_1650	0.33	-0.7
1,718,842	-		Synpcc7942_1650	0.35	+1.8
1,718,857	-		Synpcc7942_1650	0.35	-1.1
1,718,897	+		Synpcc7942_1650	0.37	-0.9
1,718,897	+		Synpcc7942_1650	0.37	-2.6
1,718,908	-		Synpcc7942_1650	0.37	-1.9
1,718,941	-		Synpcc7942_1650	0.38	-0.2
1,718,948	-		Synpcc7942_1650	0.38	-4.2
1,718,957	-		Synpcc7942_1650	0.39	-0.7
1,718,999	+		Synpcc7942_1650	0.40	-2.1
1,719,025	+		Synpcc7942_1650	0.41	-2.6
1,719,033	-		Synpcc7942_1650	0.41	-0.2
1,719,035	+		Synpcc7942_1650	0.41	-1.5
1,719,035	+		Synpcc7942_1650	0.41	-1.4
1,719,043	-		Synpcc7942_1650	0.41	-2.5
1,719,043	-		Synpcc7942_1650	0.41	-3.1
1,719,043	-		Synpcc7942_1650	0.41	-1.6
1,719,044	-				-1.4
1,719,081	+		Synpcc7942_1650	0.42	+0.3
1,719,081	+		Synpcc7942_1650	0.42	-2.2
1,719,097	-		Synpcc7942_1650	0.43	-2.6
1,719,124	+		Synpcc7942_1650	0.44	-3.0
1,719,134	-		Synpcc7942_1650	0.44	-0.7
1,719,143	+		Synpcc7942_1650	0.44	-2.2
1,719,157	+		Synpcc7942_1650	0.45	-4.6
1,719,163	-		Synpcc7942_1650	0.45	-3.7
1,719,163	-		Synpcc7942_1650	0.45	-0.2
1,719,170	-		Synpcc7942_1650	0.45	-1.4
1,719,214	+		Synpcc7942_1650	0.47	-0.7
1,719,226	+		Synpcc7942_1650	0.47	-2.4
1,719,226	+		Synpcc7942_1650	0.47	-3.5
1,719,243	+		Synpcc7942_1650	0.47	-2.1
1,719,258	+		Synpcc7942_1650	0.48	-4.3
1,719,274	-		Synpcc7942_1650	0.48	-1.6
1,719,286	-		Synpcc7942_1650	0.49	-3.0
1,719,289	-		Synpcc7942_1650	0.49	-0.7
1,719,291	-		Synpcc7942_1650	0.49	-2.4
1,719,306	-		Synpcc7942_1650	0.49	-2.1
1,719,306	-		Synpcc7942_1650	0.49	-1.8
1,719,322	+		Synpcc7942_1650	0.50	-2.8
1,719,322	+		Synpcc7942_1650	0.50	-3.0
1,719,322	+		Synpcc7942_1650	0.50	-1.6
1,719,330	-		Synpcc7942_1650	0.50	-2.2
1,719,330	-				+0.1
1,719,330	-		Synpcc7942_1650	0.50	+1.6
1,719,338	+		Synpcc7942_1650	0.50	-3.2
1,719,345	-		Synpcc7942_1650	0.51	-2.9
1,719,396	+		Synpcc7942_1650	0.52	-2.7
1,719,402	+		Synpcc7942_1650	0.52	-1.8
1,719,404	+		Synpcc7942_1650	0.52	-2.6
1,719,405	-		Synpcc7942_1650	0.52	-1.5
1,719,405	-		Synpcc7942_1650	0.52	-1.0
1,719,405	-		Synpcc7942_1650	0.52	-2.1
1,719,412	+		Synpcc7942_1650	0.53	-0.6
1,719,412	-		Synpcc7942_1650	0.53	-1.8
1,719,412	-		Synpcc7942_1650	0.53	-1.2
1,719,413	+		Synpcc7942_1650	0.53	-2.6
1,719,413	+		Synpcc7942_1650	0.53	-4.6
1,719,414	+		Synpcc7942_1650	0.53	-2.4
1,719,421	-		Synpcc7942_1650	0.53	-1.3
1,719,421	-		Synpcc7942_1650	0.53	-1.5
1,719,456	-		Synpcc7942_1650	0.54	-1.6
1,719,458	+				-1.8
1,719,489	-		Synpcc7942_1650	0.55	-1.9
1,719,489	-		Synpcc7942_1650	0.55	-1.5
1,719,489	-		Synpcc7942_1650	0.55	-2.2
1,719,489	-		Synpcc7942_1650	0.55	-3.4
1,719,489	-		Synpcc7942_1650	0.55	-2.7
1,719,530	+		Synpcc7942_1650	0.56	-3.4
1,719,547	-		Synpcc7942_1650	0.57	-2.2
1,719,555	+		Synpcc7942_1650	0.57	-1.9
1,719,566	+		Synpcc7942_1650	0.57	-3.2
1,719,583	+		Synpcc7942_1650	0.58	-1.7
1,719,591	-		Synpcc7942_1650	0.58	-1.7
1,719,591	-		Synpcc7942_1650	0.58	-1.9
1,719,593	-		Synpcc7942_1650	0.58	-1.4
1,719,612	+		Synpcc7942_1650	0.59	-1.4
1,719,620	-		Synpcc7942_1650	0.59	-3.6
1,719,671	-		Synpcc7942_1650	0.61	-2.8
1,719,730	-		Synpcc7942_1650	0.62	-2.7
1,719,732	+		Synpcc7942_1650	0.62	-1.4
1,719,732	+		Synpcc7942_1650	0.62	+0.4
1,719,740	-		Synpcc7942_1650	0.63	-1.6
1,719,740	-		Synpcc7942_1650	0.63	-1.2
1,719,776	+		Synpcc7942_1650	0.64	-1.6
1,719,790	+		Synpcc7942_1650	0.64	-0.5
1,719,790	+		Synpcc7942_1650	0.64	-3.6
1,719,794	-		Synpcc7942_1650	0.64	-2.1
1,719,798	-		Synpcc7942_1650	0.65	-2.8
1,719,808	-		Synpcc7942_1650	0.65	-4.2
1,719,811	+		Synpcc7942_1650	0.65	-3.3
1,719,811	+		Synpcc7942_1650	0.65	-0.5
1,719,819	-		Synpcc7942_1650	0.65	-0.5
1,719,819	-		Synpcc7942_1650	0.65	-4.2
1,719,819	-		Synpcc7942_1650	0.65	-1.2
1,719,822	-		Synpcc7942_1650	0.65	-3.4
1,719,848	+		Synpcc7942_1650	0.66	-2.2
1,719,848	+		Synpcc7942_1650	0.66	+0.0
1,719,882	+		Synpcc7942_1650	0.67	-0.1
1,719,955	+		Synpcc7942_1650	0.69	-2.0
1,719,955	+		Synpcc7942_1650	0.69	+0.3
1,719,967	-		Synpcc7942_1650	0.70	-2.4
1,720,001	-		Synpcc7942_1650	0.71	-2.4
1,720,057	-		Synpcc7942_1650	0.73	-1.5
1,720,148	+		Synpcc7942_1650	0.75	-0.4
1,720,148	+		Synpcc7942_1650	0.75	-1.4
1,720,156	-		Synpcc7942_1650	0.76	+0.1
1,720,156	-		Synpcc7942_1650	0.76	-2.2
1,720,173	+		Synpcc7942_1650	0.76	-1.0
1,720,180	-		Synpcc7942_1650	0.76	-3.0
1,720,186	+		Synpcc7942_1650	0.77	-3.4
1,720,210	+		Synpcc7942_1650	0.77	-1.8
1,720,217	-		Synpcc7942_1650	0.77	-2.1
1,720,238	-		Synpcc7942_1650	0.78	-4.9
1,720,260	-				-2.1
1,720,273	+		Synpcc7942_1650	0.79	-1.8
1,720,281	-		Synpcc7942_1650	0.79	-4.0
1,720,283	+		Synpcc7942_1650	0.80	-2.6
1,720,311	+		Synpcc7942_1650	0.80	-3.7
1,720,336	+		Synpcc7942_1650	0.81	-3.6
1,720,348	+		Synpcc7942_1650	0.82	-1.0
1,720,354	-		Synpcc7942_1650	0.82	-0.3
1,720,387	+		Synpcc7942_1650	0.83	-2.3
1,720,387	-				-0.9
1,720,417	+		Synpcc7942_1650	0.84	-0.9
1,720,458	+		Synpcc7942_1650	0.85	-0.9
1,720,458	+		Synpcc7942_1650	0.85	-2.2
1,720,458	+		Synpcc7942_1650	0.85	-0.9
1,720,466	-		Synpcc7942_1650	0.85	-3.9
1,720,466	-		Synpcc7942_1650	0.85	-2.0
1,720,475	+		Synpcc7942_1650	0.85	-1.5
1,720,483	-		Synpcc7942_1650	0.86	-2.6
1,720,497	-		Synpcc7942_1650	0.86	-2.4
1,720,598	-		Synpcc7942_1650	0.89	-1.9
1,720,608	-		Synpcc7942_1650	0.90	-2.1
1,720,613	-		Synpcc7942_1650	0.90	-2.7
1,720,618	-		Synpcc7942_1650	0.90	-3.4
1,720,620	-		Synpcc7942_1650	0.90	-2.5
1,720,629	+				-2.5
1,720,636	+				-2.0
1,720,682	+				-1.2
1,720,705	+				-3.0
1,720,736	+				-3.9
1,720,736	+				-2.9
1,720,738	+				-1.7
1,720,773	+				-2.0
1,720,773	+				-1.6
1,720,777	-				-0.5
1,720,782	-				-1.5
1,720,917	-				+0.1
1,720,926	+				-0.7
1,720,926	+				-1.1
1,720,941	+				-0.0
1,720,941	+				-0.3
1,720,941	+				+3.1
1,720,941	+				+0.2
1,720,941	+				-1.0
1,720,942	-				-0.5
1,720,946	+				-0.2
1,720,949	-				+2.0
1,720,949	-				+1.5
1,720,949	-				+0.5
1,720,949	-				-0.6
1,720,949	-				+0.7
1,720,949	-				+0.9
1,720,950	-				-0.6
1,721,019	-				+0.4
1,721,042	+				-3.7
1,721,042	+				+1.7
1,721,050	-				-1.1
1,721,062	-				+1.1
1,721,796	-				-1.9
1,721,919	-				-1.6
1,721,937	+				-0.9