Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1434

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargC and Synpcc7942_1434 are separated by 213 nucleotidesSynpcc7942_1434 and menD are separated by 120 nucleotides Synpcc7942_1433: argC - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,486,983 to 1,488,041 argC Synpcc7942_1434: Synpcc7942_1434 - hypothetical protein, at 1,488,255 to 1,488,854 _1434 Synpcc7942_1435: menD - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase, at 1,488,975 to 1,490,723 menD Position (kb) 1488 1489Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1488.034 kb on + strandat 1488.035 kb on + strandat 1488.035 kb on + strandat 1488.035 kb on + strandat 1488.057 kb on + strandat 1488.057 kb on + strandat 1488.057 kb on + strandat 1488.057 kb on + strandat 1488.065 kb on - strandat 1488.065 kb on - strandat 1488.065 kb on - strandat 1488.068 kb on - strandat 1488.133 kb on - strandat 1488.136 kb on + strandat 1488.161 kb on + strandat 1488.164 kb on - strandat 1488.167 kb on - strandat 1488.169 kb on - strandat 1488.276 kb on - strandat 1488.355 kb on + strand, within Synpcc7942_1434at 1488.395 kb on - strand, within Synpcc7942_1434at 1488.434 kb on + strand, within Synpcc7942_1434at 1488.448 kb on - strand, within Synpcc7942_1434at 1488.461 kb on - strand, within Synpcc7942_1434at 1488.484 kb on - strand, within Synpcc7942_1434at 1488.500 kb on + strand, within Synpcc7942_1434at 1488.508 kb on - strand, within Synpcc7942_1434at 1488.533 kb on + strand, within Synpcc7942_1434at 1488.581 kb on + strand, within Synpcc7942_1434at 1488.581 kb on + strand, within Synpcc7942_1434at 1488.584 kb on - strand, within Synpcc7942_1434at 1488.589 kb on - strand, within Synpcc7942_1434at 1488.625 kb on - strand, within Synpcc7942_1434at 1488.648 kb on + strand, within Synpcc7942_1434at 1488.654 kb on - strandat 1488.656 kb on - strand, within Synpcc7942_1434at 1488.688 kb on - strand, within Synpcc7942_1434at 1488.707 kb on - strand, within Synpcc7942_1434at 1488.712 kb on - strand, within Synpcc7942_1434at 1488.742 kb on - strand, within Synpcc7942_1434at 1488.795 kb on - strandat 1488.858 kb on + strandat 1488.901 kb on - strandat 1488.983 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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1,488,034 + -1.3
1,488,035 + +1.8
1,488,035 + -2.4
1,488,035 + -0.6
1,488,057 + -0.5
1,488,057 + +1.0
1,488,057 + -2.2
1,488,057 + -1.7
1,488,065 - +0.1
1,488,065 - +1.0
1,488,065 - -0.5
1,488,068 - -0.4
1,488,133 - -2.8
1,488,136 + -2.5
1,488,161 + +1.0
1,488,164 - -1.0
1,488,167 - -1.8
1,488,169 - +1.0
1,488,276 - +2.0
1,488,355 + Synpcc7942_1434 0.17 +1.7
1,488,395 - Synpcc7942_1434 0.23 +2.4
1,488,434 + Synpcc7942_1434 0.30 -0.5
1,488,448 - Synpcc7942_1434 0.32 +3.5
1,488,461 - Synpcc7942_1434 0.34 +3.9
1,488,484 - Synpcc7942_1434 0.38 +4.1
1,488,500 + Synpcc7942_1434 0.41 +2.8
1,488,508 - Synpcc7942_1434 0.42 +3.3
1,488,533 + Synpcc7942_1434 0.46 +2.8
1,488,581 + Synpcc7942_1434 0.54 +0.6
1,488,581 + Synpcc7942_1434 0.54 +2.2
1,488,584 - Synpcc7942_1434 0.55 +2.0
1,488,589 - Synpcc7942_1434 0.56 +2.9
1,488,625 - Synpcc7942_1434 0.62 +0.3
1,488,648 + Synpcc7942_1434 0.66 +2.1
1,488,654 - +2.5
1,488,656 - Synpcc7942_1434 0.67 +1.5
1,488,688 - Synpcc7942_1434 0.72 +3.0
1,488,707 - Synpcc7942_1434 0.75 -0.5
1,488,712 - Synpcc7942_1434 0.76 -0.3
1,488,742 - Synpcc7942_1434 0.81 +1.7
1,488,795 - +0.5
1,488,858 + +0.9
1,488,901 - +2.9
1,488,983 + +3.3

Or see this region's nucleotide sequence