Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1172

Experiment: Flask grown to static phase (untill yellowing)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_1171 and lnt are separated by 38 nucleotideslnt and Synpcc7942_1173 are separated by 269 nucleotides Synpcc7942_1171: Synpcc7942_1171 - hypothetical protein, at 1,204,598 to 1,206,109 _1171 Synpcc7942_1172: lnt - apolipoprotein N-acyltransferase, at 1,206,148 to 1,207,596 lnt Synpcc7942_1173: Synpcc7942_1173 - hypothetical protein, at 1,207,866 to 1,209,134 _1173 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1205.172 kb on + strand, within Synpcc7942_1171at 1205.203 kb on - strand, within Synpcc7942_1171at 1205.249 kb on + strand, within Synpcc7942_1171at 1205.255 kb on + strand, within Synpcc7942_1171at 1205.303 kb on + strand, within Synpcc7942_1171at 1205.327 kb on + strand, within Synpcc7942_1171at 1205.341 kb on - strand, within Synpcc7942_1171at 1205.470 kb on - strand, within Synpcc7942_1171at 1205.493 kb on + strand, within Synpcc7942_1171at 1205.567 kb on - strand, within Synpcc7942_1171at 1205.577 kb on - strand, within Synpcc7942_1171at 1205.577 kb on - strand, within Synpcc7942_1171at 1205.617 kb on + strand, within Synpcc7942_1171at 1205.785 kb on - strand, within Synpcc7942_1171at 1205.889 kb on + strand, within Synpcc7942_1171at 1205.889 kb on + strand, within Synpcc7942_1171at 1205.892 kb on - strand, within Synpcc7942_1171at 1205.901 kb on + strand, within Synpcc7942_1171at 1205.909 kb on - strand, within Synpcc7942_1171at 1205.909 kb on - strand, within Synpcc7942_1171at 1205.936 kb on + strand, within Synpcc7942_1171at 1205.957 kb on + strand, within Synpcc7942_1171at 1205.989 kb on + strandat 1205.989 kb on + strandat 1206.065 kb on + strandat 1206.079 kb on + strandat 1206.113 kb on - strandat 1206.120 kb on + strandat 1206.127 kb on - strandat 1206.127 kb on - strandat 1206.159 kb on + strandat 1206.167 kb on - strandat 1206.172 kb on - strandat 1206.172 kb on - strandat 1206.187 kb on + strandat 1206.192 kb on + strandat 1206.200 kb on - strandat 1206.216 kb on + strandat 1206.219 kb on - strandat 1206.242 kb on - strandat 1206.259 kb on + strandat 1206.310 kb on + strand, within lntat 1206.318 kb on - strand, within lntat 1206.329 kb on + strand, within lntat 1206.329 kb on - strand, within lntat 1206.334 kb on + strand, within lntat 1206.334 kb on + strand, within lntat 1206.342 kb on - strand, within lntat 1206.342 kb on - strand, within lntat 1206.342 kb on - strand, within lntat 1206.349 kb on + strand, within lntat 1206.364 kb on - strand, within lntat 1206.437 kb on + strand, within lntat 1206.522 kb on - strand, within lntat 1206.621 kb on - strand, within lntat 1206.627 kb on + strand, within lntat 1206.627 kb on + strand, within lntat 1206.660 kb on - strand, within lntat 1206.712 kb on - strand, within lntat 1206.726 kb on + strand, within lntat 1206.734 kb on - strand, within lntat 1206.734 kb on - strand, within lntat 1206.769 kb on - strand, within lntat 1206.769 kb on - strand, within lntat 1206.775 kb on + strand, within lntat 1206.784 kb on - strand, within lntat 1206.837 kb on + strand, within lntat 1206.840 kb on - strand, within lntat 1206.846 kb on + strand, within lntat 1206.854 kb on - strand, within lntat 1206.854 kb on - strand, within lntat 1206.865 kb on + strand, within lntat 1206.869 kb on + strand, within lntat 1206.875 kb on + strand, within lntat 1206.885 kb on + strand, within lntat 1206.903 kb on - strand, within lntat 1206.903 kb on - strand, within lntat 1206.903 kb on - strand, within lntat 1206.903 kb on - strand, within lntat 1206.903 kb on - strand, within lntat 1206.903 kb on - strand, within lntat 1206.930 kb on + strand, within lntat 1206.941 kb on + strand, within lntat 1206.964 kb on + strand, within lntat 1206.964 kb on + strand, within lntat 1206.972 kb on - strand, within lntat 1206.972 kb on - strand, within lntat 1206.977 kb on - strand, within lntat 1207.009 kb on + strand, within lntat 1207.017 kb on - strand, within lntat 1207.017 kb on - strand, within lntat 1207.017 kb on - strand, within lntat 1207.053 kb on - strand, within lntat 1207.066 kb on + strand, within lntat 1207.097 kb on + strand, within lntat 1207.100 kb on - strand, within lntat 1207.105 kb on - strand, within lntat 1207.110 kb on - strand, within lntat 1207.125 kb on + strand, within lntat 1207.134 kb on + strand, within lntat 1207.135 kb on + strand, within lntat 1207.136 kb on + strand, within lntat 1207.151 kb on - strand, within lntat 1207.153 kb on + strand, within lntat 1207.163 kb on + strand, within lntat 1207.166 kb on - strand, within lntat 1207.166 kb on - strand, within lntat 1207.171 kb on - strand, within lntat 1207.171 kb on - strand, within lntat 1207.176 kb on + strand, within lntat 1207.191 kb on + strand, within lntat 1207.191 kb on + strand, within lntat 1207.199 kb on - strand, within lntat 1207.203 kb on + strand, within lntat 1207.203 kb on + strand, within lntat 1207.203 kb on + strand, within lntat 1207.203 kb on + strand, within lntat 1207.211 kb on - strand, within lntat 1207.211 kb on - strand, within lntat 1207.211 kb on - strand, within lntat 1207.212 kb on - strand, within lntat 1207.223 kb on + strand, within lntat 1207.244 kb on - strand, within lntat 1207.258 kb on - strand, within lntat 1207.263 kb on + strand, within lntat 1207.263 kb on + strand, within lntat 1207.281 kb on + strand, within lntat 1207.281 kb on + strand, within lntat 1207.294 kb on + strand, within lntat 1207.295 kb on - strand, within lntat 1207.306 kb on + strand, within lntat 1207.306 kb on + strand, within lntat 1207.316 kb on + strand, within lntat 1207.316 kb on + strand, within lntat 1207.316 kb on + strand, within lntat 1207.316 kb on + strand, within lntat 1207.316 kb on + strand, within lntat 1207.316 kb on + strand, within lntat 1207.317 kb on + strand, within lntat 1207.317 kb on + strand, within lntat 1207.362 kb on - strand, within lntat 1207.397 kb on + strand, within lntat 1207.402 kb on + strand, within lntat 1207.402 kb on + strand, within lntat 1207.402 kb on + strand, within lntat 1207.410 kb on - strand, within lntat 1207.410 kb on - strand, within lntat 1207.410 kb on - strand, within lntat 1207.412 kb on + strand, within lntat 1207.412 kb on + strand, within lntat 1207.418 kb on + strand, within lntat 1207.420 kb on - strand, within lntat 1207.439 kb on + strand, within lntat 1207.449 kb on + strand, within lntat 1207.452 kb on - strandat 1207.505 kb on - strandat 1207.540 kb on + strandat 1207.548 kb on - strandat 1207.580 kb on + strandat 1207.620 kb on + strandat 1207.622 kb on - strandat 1207.644 kb on + strandat 1207.663 kb on + strandat 1207.676 kb on + strandat 1207.676 kb on + strandat 1207.676 kb on + strandat 1207.684 kb on - strandat 1207.684 kb on - strandat 1207.684 kb on - strandat 1207.692 kb on - strandat 1207.705 kb on + strandat 1207.726 kb on + strandat 1207.765 kb on + strandat 1207.765 kb on - strandat 1207.767 kb on + strandat 1207.767 kb on + strandat 1207.775 kb on - strandat 1207.790 kb on - strandat 1207.811 kb on - strandat 1207.822 kb on + strandat 1207.822 kb on + strandat 1207.830 kb on - strandat 1207.830 kb on - strandat 1207.830 kb on - strandat 1207.830 kb on - strandat 1207.832 kb on + strandat 1207.832 kb on + strandat 1207.832 kb on + strandat 1207.833 kb on + strandat 1207.835 kb on - strandat 1207.838 kb on + strandat 1207.840 kb on - strandat 1207.840 kb on - strandat 1207.848 kb on - strandat 1207.855 kb on + strandat 1207.898 kb on + strandat 1207.938 kb on - strandat 1207.965 kb on - strandat 1207.987 kb on - strandat 1208.068 kb on - strand, within Synpcc7942_1173at 1208.100 kb on - strand, within Synpcc7942_1173at 1208.102 kb on + strand, within Synpcc7942_1173at 1208.102 kb on + strand, within Synpcc7942_1173at 1208.110 kb on - strand, within Synpcc7942_1173at 1208.110 kb on - strand, within Synpcc7942_1173at 1208.110 kb on - strand, within Synpcc7942_1173at 1208.136 kb on + strand, within Synpcc7942_1173at 1208.144 kb on - strand, within Synpcc7942_1173at 1208.148 kb on - strand, within Synpcc7942_1173at 1208.160 kb on - strand, within Synpcc7942_1173at 1208.168 kb on - strand, within Synpcc7942_1173at 1208.228 kb on - strand, within Synpcc7942_1173at 1208.234 kb on + strand, within Synpcc7942_1173at 1208.234 kb on - strand, within Synpcc7942_1173at 1208.336 kb on - strand, within Synpcc7942_1173at 1208.371 kb on + strand, within Synpcc7942_1173at 1208.371 kb on + strand, within Synpcc7942_1173at 1208.371 kb on + strand, within Synpcc7942_1173at 1208.379 kb on - strand, within Synpcc7942_1173at 1208.379 kb on - strand, within Synpcc7942_1173at 1208.379 kb on - strand, within Synpcc7942_1173at 1208.379 kb on - strand, within Synpcc7942_1173at 1208.380 kb on - strand, within Synpcc7942_1173at 1208.419 kb on - strand, within Synpcc7942_1173at 1208.431 kb on - strand, within Synpcc7942_1173at 1208.469 kb on - strand, within Synpcc7942_1173at 1208.471 kb on - strand, within Synpcc7942_1173at 1208.555 kb on - strand, within Synpcc7942_1173at 1208.557 kb on + strand, within Synpcc7942_1173

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
remove
1,205,172 + Synpcc7942_1171 0.38 -1.6
1,205,203 - Synpcc7942_1171 0.40 -2.2
1,205,249 + Synpcc7942_1171 0.43 -0.2
1,205,255 + Synpcc7942_1171 0.43 -0.7
1,205,303 + Synpcc7942_1171 0.47 +0.1
1,205,327 + Synpcc7942_1171 0.48 -0.5
1,205,341 - Synpcc7942_1171 0.49 +0.7
1,205,470 - Synpcc7942_1171 0.58 +1.2
1,205,493 + Synpcc7942_1171 0.59 -1.6
1,205,567 - Synpcc7942_1171 0.64 -1.2
1,205,577 - Synpcc7942_1171 0.65 -1.3
1,205,577 - Synpcc7942_1171 0.65 -1.8
1,205,617 + Synpcc7942_1171 0.67 -0.3
1,205,785 - Synpcc7942_1171 0.79 +3.0
1,205,889 + Synpcc7942_1171 0.85 -1.9
1,205,889 + Synpcc7942_1171 0.85 +3.4
1,205,892 - Synpcc7942_1171 0.86 -1.0
1,205,901 + Synpcc7942_1171 0.86 -1.3
1,205,909 - Synpcc7942_1171 0.87 +1.5
1,205,909 - Synpcc7942_1171 0.87 -1.4
1,205,936 + Synpcc7942_1171 0.88 -2.3
1,205,957 + Synpcc7942_1171 0.90 -1.3
1,205,989 + +2.1
1,205,989 + +0.7
1,206,065 + +2.1
1,206,079 + -2.1
1,206,113 - -0.1
1,206,120 + -1.1
1,206,127 - -1.5
1,206,127 - +1.7
1,206,159 + +2.1
1,206,167 - +1.2
1,206,172 - -1.1
1,206,172 - -3.0
1,206,187 + -0.8
1,206,192 + -1.1
1,206,200 - -1.8
1,206,216 + -0.8
1,206,219 - -2.2
1,206,242 - +0.1
1,206,259 + -0.5
1,206,310 + lnt Synpcc7942_1172 0.11 -0.2
1,206,318 - lnt Synpcc7942_1172 0.12 +2.6
1,206,329 + lnt Synpcc7942_1172 0.12 -3.2
1,206,329 - lnt Synpcc7942_1172 0.12 -3.6
1,206,334 + lnt Synpcc7942_1172 0.13 -2.6
1,206,334 + lnt Synpcc7942_1172 0.13 -2.6
1,206,342 - lnt Synpcc7942_1172 0.13 -2.6
1,206,342 - lnt Synpcc7942_1172 0.13 -2.0
1,206,342 - lnt Synpcc7942_1172 0.13 -3.3
1,206,349 + lnt Synpcc7942_1172 0.14 -0.7
1,206,364 - lnt Synpcc7942_1172 0.15 -1.6
1,206,437 + lnt Synpcc7942_1172 0.20 -1.6
1,206,522 - lnt Synpcc7942_1172 0.26 -2.8
1,206,621 - lnt Synpcc7942_1172 0.33 -1.5
1,206,627 + lnt Synpcc7942_1172 0.33 -0.9
1,206,627 + lnt Synpcc7942_1172 0.33 -3.0
1,206,660 - lnt Synpcc7942_1172 0.35 -1.7
1,206,712 - lnt Synpcc7942_1172 0.39 -2.2
1,206,726 + lnt Synpcc7942_1172 0.40 -1.5
1,206,734 - lnt Synpcc7942_1172 0.40 -1.3
1,206,734 - lnt Synpcc7942_1172 0.40 -2.4
1,206,769 - lnt Synpcc7942_1172 0.43 -1.6
1,206,769 - lnt Synpcc7942_1172 0.43 -0.2
1,206,775 + lnt Synpcc7942_1172 0.43 +1.1
1,206,784 - lnt Synpcc7942_1172 0.44 -1.8
1,206,837 + lnt Synpcc7942_1172 0.48 +0.3
1,206,840 - lnt Synpcc7942_1172 0.48 -0.9
1,206,846 + lnt Synpcc7942_1172 0.48 -2.8
1,206,854 - lnt Synpcc7942_1172 0.49 -0.0
1,206,854 - lnt Synpcc7942_1172 0.49 -1.2
1,206,865 + lnt Synpcc7942_1172 0.49 -2.0
1,206,869 + lnt Synpcc7942_1172 0.50 -2.1
1,206,875 + lnt Synpcc7942_1172 0.50 -1.2
1,206,885 + lnt Synpcc7942_1172 0.51 -1.3
1,206,903 - lnt Synpcc7942_1172 0.52 -1.6
1,206,903 - lnt Synpcc7942_1172 0.52 -3.0
1,206,903 - lnt Synpcc7942_1172 0.52 -1.6
1,206,903 - lnt Synpcc7942_1172 0.52 +0.3
1,206,903 - lnt Synpcc7942_1172 0.52 -1.2
1,206,903 - lnt Synpcc7942_1172 0.52 -1.8
1,206,930 + lnt Synpcc7942_1172 0.54 -2.6
1,206,941 + lnt Synpcc7942_1172 0.55 -1.6
1,206,964 + lnt Synpcc7942_1172 0.56 -1.3
1,206,964 + lnt Synpcc7942_1172 0.56 -0.6
1,206,972 - lnt Synpcc7942_1172 0.57 -0.9
1,206,972 - lnt Synpcc7942_1172 0.57 -1.3
1,206,977 - lnt Synpcc7942_1172 0.57 -1.6
1,207,009 + lnt Synpcc7942_1172 0.59 -0.9
1,207,017 - lnt Synpcc7942_1172 0.60 -3.2
1,207,017 - lnt Synpcc7942_1172 0.60 +0.9
1,207,017 - lnt Synpcc7942_1172 0.60 -2.3
1,207,053 - lnt Synpcc7942_1172 0.62 -0.9
1,207,066 + lnt Synpcc7942_1172 0.63 -2.1
1,207,097 + lnt Synpcc7942_1172 0.65 -0.7
1,207,100 - lnt Synpcc7942_1172 0.66 -2.6
1,207,105 - lnt Synpcc7942_1172 0.66 -2.3
1,207,110 - lnt Synpcc7942_1172 0.66 -3.1
1,207,125 + lnt Synpcc7942_1172 0.67 -1.3
1,207,134 + lnt Synpcc7942_1172 0.68 -1.2
1,207,135 + lnt Synpcc7942_1172 0.68 -0.9
1,207,136 + lnt Synpcc7942_1172 0.68 -1.2
1,207,151 - lnt Synpcc7942_1172 0.69 -1.7
1,207,153 + lnt Synpcc7942_1172 0.69 -0.6
1,207,163 + lnt Synpcc7942_1172 0.70 -0.7
1,207,166 - lnt Synpcc7942_1172 0.70 -2.1
1,207,166 - lnt Synpcc7942_1172 0.70 -3.8
1,207,171 - lnt Synpcc7942_1172 0.71 -1.5
1,207,171 - lnt Synpcc7942_1172 0.71 -2.1
1,207,176 + lnt Synpcc7942_1172 0.71 -1.9
1,207,191 + lnt Synpcc7942_1172 0.72 -1.8
1,207,191 + lnt Synpcc7942_1172 0.72 -1.5
1,207,199 - lnt Synpcc7942_1172 0.73 +0.1
1,207,203 + lnt Synpcc7942_1172 0.73 -3.7
1,207,203 + lnt Synpcc7942_1172 0.73 -2.8
1,207,203 + lnt Synpcc7942_1172 0.73 -2.3
1,207,203 + lnt Synpcc7942_1172 0.73 -1.7
1,207,211 - lnt Synpcc7942_1172 0.73 -2.5
1,207,211 - lnt Synpcc7942_1172 0.73 -1.1
1,207,211 - lnt Synpcc7942_1172 0.73 -2.5
1,207,212 - lnt Synpcc7942_1172 0.73 -1.7
1,207,223 + lnt Synpcc7942_1172 0.74 +0.3
1,207,244 - lnt Synpcc7942_1172 0.76 -2.0
1,207,258 - lnt Synpcc7942_1172 0.77 -0.9
1,207,263 + lnt Synpcc7942_1172 0.77 -1.1
1,207,263 + lnt Synpcc7942_1172 0.77 -2.0
1,207,281 + lnt Synpcc7942_1172 0.78 -1.8
1,207,281 + lnt Synpcc7942_1172 0.78 -0.7
1,207,294 + lnt Synpcc7942_1172 0.79 -2.0
1,207,295 - lnt Synpcc7942_1172 0.79 -2.8
1,207,306 + lnt Synpcc7942_1172 0.80 -2.1
1,207,306 + lnt Synpcc7942_1172 0.80 -4.4
1,207,316 + lnt Synpcc7942_1172 0.81 -1.8
1,207,316 + lnt Synpcc7942_1172 0.81 -2.7
1,207,316 + lnt Synpcc7942_1172 0.81 -2.9
1,207,316 + lnt Synpcc7942_1172 0.81 -0.7
1,207,316 + lnt Synpcc7942_1172 0.81 -0.9
1,207,316 + lnt Synpcc7942_1172 0.81 -1.9
1,207,317 + lnt Synpcc7942_1172 0.81 -2.0
1,207,317 + lnt Synpcc7942_1172 0.81 -1.8
1,207,362 - lnt Synpcc7942_1172 0.84 -1.1
1,207,397 + lnt Synpcc7942_1172 0.86 -0.9
1,207,402 + lnt Synpcc7942_1172 0.87 -3.6
1,207,402 + lnt Synpcc7942_1172 0.87 -2.0
1,207,402 + lnt Synpcc7942_1172 0.87 -2.3
1,207,410 - lnt Synpcc7942_1172 0.87 -2.6
1,207,410 - lnt Synpcc7942_1172 0.87 -1.6
1,207,410 - lnt Synpcc7942_1172 0.87 -1.3
1,207,412 + lnt Synpcc7942_1172 0.87 -2.0
1,207,412 + lnt Synpcc7942_1172 0.87 -0.8
1,207,418 + lnt Synpcc7942_1172 0.88 -5.1
1,207,420 - lnt Synpcc7942_1172 0.88 -1.1
1,207,439 + lnt Synpcc7942_1172 0.89 -3.1
1,207,449 + lnt Synpcc7942_1172 0.90 -2.0
1,207,452 - -2.0
1,207,505 - -1.5
1,207,540 + -1.1
1,207,548 - -1.3
1,207,580 + -3.4
1,207,620 + +1.4
1,207,622 - -3.8
1,207,644 + -1.5
1,207,663 + -1.4
1,207,676 + +2.7
1,207,676 + +1.9
1,207,676 + -0.7
1,207,684 - +0.5
1,207,684 - +0.8
1,207,684 - +1.4
1,207,692 - +2.9
1,207,705 + -0.5
1,207,726 + -2.3
1,207,765 + -0.5
1,207,765 - +2.5
1,207,767 + -2.1
1,207,767 + -0.8
1,207,775 - +0.3
1,207,790 - -1.5
1,207,811 - -2.4
1,207,822 + -1.6
1,207,822 + -1.3
1,207,830 - +1.9
1,207,830 - +1.9
1,207,830 - +1.4
1,207,830 - +0.3
1,207,832 + +2.0
1,207,832 + -1.3
1,207,832 + +2.6
1,207,833 + -1.1
1,207,835 - -2.4
1,207,838 + +0.5
1,207,840 - -0.9
1,207,840 - -0.1
1,207,848 - -1.1
1,207,855 + +0.5
1,207,898 + +0.7
1,207,938 - +4.2
1,207,965 - +1.1
1,207,987 - +1.8
1,208,068 - Synpcc7942_1173 0.16 +1.3
1,208,100 - Synpcc7942_1173 0.18 +0.6
1,208,102 + Synpcc7942_1173 0.19 +1.3
1,208,102 + Synpcc7942_1173 0.19 -0.5
1,208,110 - Synpcc7942_1173 0.19 +0.0
1,208,110 - Synpcc7942_1173 0.19 +1.8
1,208,110 - Synpcc7942_1173 0.19 -1.1
1,208,136 + Synpcc7942_1173 0.21 +1.2
1,208,144 - Synpcc7942_1173 0.22 -1.7
1,208,148 - Synpcc7942_1173 0.22 -0.5
1,208,160 - Synpcc7942_1173 0.23 +0.1
1,208,168 - Synpcc7942_1173 0.24 -2.6
1,208,228 - Synpcc7942_1173 0.29 -2.3
1,208,234 + Synpcc7942_1173 0.29 -1.1
1,208,234 - Synpcc7942_1173 0.29 -0.5
1,208,336 - Synpcc7942_1173 0.37 +0.9
1,208,371 + Synpcc7942_1173 0.40 +2.0
1,208,371 + Synpcc7942_1173 0.40 -3.0
1,208,371 + Synpcc7942_1173 0.40 +3.8
1,208,379 - Synpcc7942_1173 0.40 -1.7
1,208,379 - Synpcc7942_1173 0.40 +1.5
1,208,379 - Synpcc7942_1173 0.40 -0.9
1,208,379 - Synpcc7942_1173 0.40 -0.2
1,208,380 - Synpcc7942_1173 0.41 -1.1
1,208,419 - Synpcc7942_1173 0.44 +2.8
1,208,431 - Synpcc7942_1173 0.45 -0.2
1,208,469 - Synpcc7942_1173 0.48 -0.9
1,208,471 - Synpcc7942_1173 0.48 -1.2
1,208,555 - Synpcc7942_1173 0.54 -2.1
1,208,557 + Synpcc7942_1173 0.54 +0.8

Or see this region's nucleotide sequence