Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1125

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnb and Synpcc7942_1125 are separated by 96 nucleotidesSynpcc7942_1125 and Synpcc7942_1126 are separated by 57 nucleotides Synpcc7942_1124: rnb - Exoribonuclease II, at 1,141,288 to 1,143,300 rnb Synpcc7942_1125: Synpcc7942_1125 - putative CheA signal transduction histidine kinase, no good domain identification, at 1,143,397 to 1,144,332 _1125 Synpcc7942_1126: Synpcc7942_1126 - ABC transporter permease protein, at 1,144,390 to 1,145,223 _1126 Position (kb) 1143 1144 1145Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1143.263 kb on + strandat 1143.263 kb on + strandat 1143.282 kb on + strandat 1143.288 kb on - strandat 1143.288 kb on - strandat 1143.288 kb on - strandat 1143.288 kb on - strandat 1143.289 kb on - strandat 1143.294 kb on + strandat 1143.303 kb on - strandat 1143.333 kb on - strandat 1143.335 kb on + strandat 1143.335 kb on + strandat 1143.349 kb on - strandat 1143.359 kb on + strandat 1143.366 kb on + strandat 1143.369 kb on - strandat 1143.369 kb on - strandat 1143.379 kb on - strandat 1143.385 kb on + strandat 1143.386 kb on + strandat 1143.463 kb on + strandat 1143.463 kb on + strandat 1143.471 kb on - strandat 1143.472 kb on + strandat 1143.480 kb on - strandat 1143.542 kb on + strand, within Synpcc7942_1125at 1143.542 kb on + strand, within Synpcc7942_1125at 1143.544 kb on + strand, within Synpcc7942_1125at 1143.544 kb on + strand, within Synpcc7942_1125at 1143.544 kb on + strand, within Synpcc7942_1125at 1143.544 kb on + strand, within Synpcc7942_1125at 1143.550 kb on - strand, within Synpcc7942_1125at 1143.550 kb on - strand, within Synpcc7942_1125at 1143.550 kb on - strand, within Synpcc7942_1125at 1143.552 kb on - strand, within Synpcc7942_1125at 1143.552 kb on - strand, within Synpcc7942_1125at 1143.552 kb on - strand, within Synpcc7942_1125at 1143.560 kb on - strand, within Synpcc7942_1125at 1143.564 kb on - strand, within Synpcc7942_1125at 1143.568 kb on + strand, within Synpcc7942_1125at 1143.611 kb on + strand, within Synpcc7942_1125at 1143.611 kb on + strand, within Synpcc7942_1125at 1143.611 kb on + strand, within Synpcc7942_1125at 1143.611 kb on + strand, within Synpcc7942_1125at 1143.611 kb on + strand, within Synpcc7942_1125at 1143.619 kb on - strandat 1143.626 kb on - strand, within Synpcc7942_1125at 1143.641 kb on - strand, within Synpcc7942_1125at 1143.642 kb on + strand, within Synpcc7942_1125at 1143.658 kb on + strand, within Synpcc7942_1125at 1143.724 kb on - strand, within Synpcc7942_1125at 1143.726 kb on + strand, within Synpcc7942_1125at 1143.727 kb on - strand, within Synpcc7942_1125at 1143.766 kb on + strand, within Synpcc7942_1125at 1143.792 kb on - strand, within Synpcc7942_1125at 1143.808 kb on + strand, within Synpcc7942_1125at 1143.808 kb on + strand, within Synpcc7942_1125at 1143.829 kb on - strand, within Synpcc7942_1125at 1143.829 kb on - strand, within Synpcc7942_1125at 1143.859 kb on - strand, within Synpcc7942_1125at 1143.936 kb on + strand, within Synpcc7942_1125at 1143.956 kb on - strand, within Synpcc7942_1125at 1143.986 kb on + strand, within Synpcc7942_1125at 1143.994 kb on + strand, within Synpcc7942_1125at 1144.004 kb on - strand, within Synpcc7942_1125at 1144.015 kb on - strand, within Synpcc7942_1125at 1144.016 kb on + strand, within Synpcc7942_1125at 1144.043 kb on + strand, within Synpcc7942_1125at 1144.051 kb on - strand, within Synpcc7942_1125at 1144.106 kb on + strand, within Synpcc7942_1125at 1144.114 kb on - strand, within Synpcc7942_1125at 1144.119 kb on - strand, within Synpcc7942_1125at 1144.171 kb on - strand, within Synpcc7942_1125at 1144.176 kb on - strand, within Synpcc7942_1125at 1144.176 kb on - strand, within Synpcc7942_1125at 1144.185 kb on - strand, within Synpcc7942_1125at 1144.198 kb on + strand, within Synpcc7942_1125at 1144.254 kb on + strandat 1144.254 kb on + strandat 1144.257 kb on - strandat 1144.284 kb on + strandat 1144.286 kb on + strandat 1144.286 kb on + strandat 1144.290 kb on - strandat 1144.308 kb on + strandat 1144.308 kb on + strandat 1144.311 kb on - strandat 1144.316 kb on - strandat 1144.327 kb on + strandat 1144.327 kb on + strandat 1144.328 kb on + strandat 1144.335 kb on - strandat 1144.335 kb on - strandat 1144.366 kb on + strandat 1144.374 kb on - strandat 1144.374 kb on - strandat 1144.390 kb on + strandat 1144.512 kb on + strand, within Synpcc7942_1126at 1144.528 kb on - strand, within Synpcc7942_1126at 1144.585 kb on + strand, within Synpcc7942_1126at 1144.611 kb on + strand, within Synpcc7942_1126at 1144.619 kb on - strand, within Synpcc7942_1126at 1144.891 kb on - strand, within Synpcc7942_1126at 1144.904 kb on - strand, within Synpcc7942_1126at 1144.940 kb on + strand, within Synpcc7942_1126at 1144.985 kb on - strand, within Synpcc7942_1126at 1145.002 kb on + strand, within Synpcc7942_1126at 1145.051 kb on + strand, within Synpcc7942_1126at 1145.051 kb on + strand, within Synpcc7942_1126at 1145.082 kb on - strand, within Synpcc7942_1126at 1145.220 kb on + strandat 1145.242 kb on + strandat 1145.274 kb on + strandat 1145.274 kb on + strandat 1145.282 kb on - strandat 1145.287 kb on - strandat 1145.313 kb on + strandat 1145.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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1,143,263 + -1.6
1,143,263 + -3.8
1,143,282 + -1.9
1,143,288 - -2.3
1,143,288 - -1.9
1,143,288 - -3.0
1,143,288 - -4.6
1,143,289 - -3.2
1,143,294 + +0.1
1,143,303 - -2.8
1,143,333 - +0.3
1,143,335 + +0.5
1,143,335 + -0.2
1,143,349 - +1.3
1,143,359 + +2.0
1,143,366 + -0.5
1,143,369 - -1.6
1,143,369 - -2.6
1,143,379 - -2.1
1,143,385 + -0.5
1,143,386 + -0.4
1,143,463 + -0.1
1,143,463 + -2.4
1,143,471 - -2.7
1,143,472 + -1.5
1,143,480 - +1.9
1,143,542 + Synpcc7942_1125 0.15 +1.2
1,143,542 + Synpcc7942_1125 0.15 -2.2
1,143,544 + Synpcc7942_1125 0.16 -2.4
1,143,544 + Synpcc7942_1125 0.16 -1.2
1,143,544 + Synpcc7942_1125 0.16 -0.4
1,143,544 + Synpcc7942_1125 0.16 -1.5
1,143,550 - Synpcc7942_1125 0.16 +0.4
1,143,550 - Synpcc7942_1125 0.16 -2.1
1,143,550 - Synpcc7942_1125 0.16 -1.6
1,143,552 - Synpcc7942_1125 0.17 -3.4
1,143,552 - Synpcc7942_1125 0.17 +0.5
1,143,552 - Synpcc7942_1125 0.17 +0.3
1,143,560 - Synpcc7942_1125 0.17 -2.2
1,143,564 - Synpcc7942_1125 0.18 +1.3
1,143,568 + Synpcc7942_1125 0.18 -0.7
1,143,611 + Synpcc7942_1125 0.23 -0.2
1,143,611 + Synpcc7942_1125 0.23 -0.2
1,143,611 + Synpcc7942_1125 0.23 -1.9
1,143,611 + Synpcc7942_1125 0.23 -2.4
1,143,611 + Synpcc7942_1125 0.23 -1.3
1,143,619 - +0.1
1,143,626 - Synpcc7942_1125 0.24 +0.2
1,143,641 - Synpcc7942_1125 0.26 +0.2
1,143,642 + Synpcc7942_1125 0.26 -1.6
1,143,658 + Synpcc7942_1125 0.28 -1.0
1,143,724 - Synpcc7942_1125 0.35 +0.9
1,143,726 + Synpcc7942_1125 0.35 -1.2
1,143,727 - Synpcc7942_1125 0.35 +0.1
1,143,766 + Synpcc7942_1125 0.39 -2.1
1,143,792 - Synpcc7942_1125 0.42 -1.8
1,143,808 + Synpcc7942_1125 0.44 -2.2
1,143,808 + Synpcc7942_1125 0.44 -0.7
1,143,829 - Synpcc7942_1125 0.46 -1.3
1,143,829 - Synpcc7942_1125 0.46 +1.9
1,143,859 - Synpcc7942_1125 0.49 -0.2
1,143,936 + Synpcc7942_1125 0.58 -1.6
1,143,956 - Synpcc7942_1125 0.60 +1.7
1,143,986 + Synpcc7942_1125 0.63 -1.5
1,143,994 + Synpcc7942_1125 0.64 -1.3
1,144,004 - Synpcc7942_1125 0.65 -0.5
1,144,015 - Synpcc7942_1125 0.66 +0.1
1,144,016 + Synpcc7942_1125 0.66 -0.5
1,144,043 + Synpcc7942_1125 0.69 -0.9
1,144,051 - Synpcc7942_1125 0.70 -1.8
1,144,106 + Synpcc7942_1125 0.76 +3.2
1,144,114 - Synpcc7942_1125 0.77 +0.2
1,144,119 - Synpcc7942_1125 0.77 -3.1
1,144,171 - Synpcc7942_1125 0.83 +0.4
1,144,176 - Synpcc7942_1125 0.83 -0.9
1,144,176 - Synpcc7942_1125 0.83 +0.3
1,144,185 - Synpcc7942_1125 0.84 +1.9
1,144,198 + Synpcc7942_1125 0.86 +1.7
1,144,254 + +0.8
1,144,254 + +2.0
1,144,257 - -1.3
1,144,284 + -1.6
1,144,286 + +1.4
1,144,286 + -1.6
1,144,290 - -1.6
1,144,308 + -0.9
1,144,308 + -1.5
1,144,311 - +1.0
1,144,316 - +0.9
1,144,327 + +3.1
1,144,327 + +3.1
1,144,328 + +4.5
1,144,335 - -1.1
1,144,335 - -0.6
1,144,366 + -1.3
1,144,374 - -0.7
1,144,374 - -2.6
1,144,390 + -1.9
1,144,512 + Synpcc7942_1126 0.15 +1.9
1,144,528 - Synpcc7942_1126 0.17 -0.7
1,144,585 + Synpcc7942_1126 0.23 +0.2
1,144,611 + Synpcc7942_1126 0.26 +1.7
1,144,619 - Synpcc7942_1126 0.27 +0.3
1,144,891 - Synpcc7942_1126 0.60 +0.8
1,144,904 - Synpcc7942_1126 0.62 +1.1
1,144,940 + Synpcc7942_1126 0.66 -0.7
1,144,985 - Synpcc7942_1126 0.71 +2.1
1,145,002 + Synpcc7942_1126 0.73 +3.5
1,145,051 + Synpcc7942_1126 0.79 +2.1
1,145,051 + Synpcc7942_1126 0.79 +2.7
1,145,082 - Synpcc7942_1126 0.83 +1.1
1,145,220 + -0.4
1,145,242 + +3.0
1,145,274 + -3.2
1,145,274 + +1.4
1,145,282 - +2.2
1,145,287 - -1.1
1,145,313 + -0.7
1,145,313 + -2.8

Or see this region's nucleotide sequence