Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recG and Synpcc7942_1080 are separated by 629 nucleotides Synpcc7942_1080 and Synpcc7942_1081 are separated by 6 nucleotides
Synpcc7942_1079: recG - ATP-dependent DNA helicase RecG, at 1,088,698 to 1,091,151
recG
Synpcc7942_1080: Synpcc7942_1080 - K+ transporter Trk, at 1,091,781 to 1,093,124
_1080
Synpcc7942_1081: Synpcc7942_1081 - hypothetical protein, at 1,093,131 to 1,093,832
_1081
Position (kb)
1091
1092
1093
1094 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1091.558 kb on + strand at 1091.611 kb on + strand at 1091.751 kb on + strand at 1091.941 kb on + strand, within Synpcc7942_1080 at 1092.033 kb on + strand, within Synpcc7942_1080 at 1092.250 kb on - strand, within Synpcc7942_1080 at 1092.274 kb on + strand, within Synpcc7942_1080 at 1092.340 kb on - strand, within Synpcc7942_1080 at 1092.705 kb on - strand, within Synpcc7942_1080 at 1092.707 kb on - strand, within Synpcc7942_1080 at 1092.740 kb on - strand, within Synpcc7942_1080 at 1092.958 kb on + strand, within Synpcc7942_1080 at 1092.958 kb on + strand, within Synpcc7942_1080 at 1093.299 kb on + strand, within Synpcc7942_1081 at 1093.490 kb on - strand, within Synpcc7942_1081 at 1093.592 kb on - strand, within Synpcc7942_1081 at 1093.611 kb on - strand, within Synpcc7942_1081 at 1093.615 kb on + strand, within Synpcc7942_1081 at 1093.760 kb on + strand, within Synpcc7942_1081 at 1093.779 kb on + strand at 1093.856 kb on + strand at 1093.856 kb on + strand at 1093.864 kb on - strand at 1093.885 kb on + strand at 1093.891 kb on - strand at 1093.895 kb on + strand at 1093.895 kb on - strand at 1093.910 kb on - strand at 1093.910 kb on - strand at 1093.936 kb on + strand at 1093.957 kb on - strand at 1094.002 kb on - strand at 1094.111 kb on + strand at 1094.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 1,091,558 + -1.2 1,091,611 + -1.6 1,091,751 + -2.5 1,091,941 + Synpcc7942_1080 0.12 -3.3 1,092,033 + Synpcc7942_1080 0.19 -3.5 1,092,250 - Synpcc7942_1080 0.35 -2.7 1,092,274 + Synpcc7942_1080 0.37 -2.1 1,092,340 - Synpcc7942_1080 0.42 -2.8 1,092,705 - Synpcc7942_1080 0.69 -2.0 1,092,707 - Synpcc7942_1080 0.69 -2.1 1,092,740 - Synpcc7942_1080 0.71 -4.4 1,092,958 + Synpcc7942_1080 0.88 -0.6 1,092,958 + Synpcc7942_1080 0.88 -4.0 1,093,299 + Synpcc7942_1081 0.24 -1.6 1,093,490 - Synpcc7942_1081 0.51 -1.5 1,093,592 - Synpcc7942_1081 0.66 -1.1 1,093,611 - Synpcc7942_1081 0.68 -1.8 1,093,615 + Synpcc7942_1081 0.69 -3.3 1,093,760 + Synpcc7942_1081 0.90 -2.6 1,093,779 + -3.1 1,093,856 + +3.0 1,093,856 + +0.8 1,093,864 - +1.9 1,093,885 + -0.2 1,093,891 - -0.3 1,093,895 + +1.3 1,093,895 - +1.1 1,093,910 - -1.0 1,093,910 - +2.3 1,093,936 + +1.4 1,093,957 - -2.4 1,094,002 - +0.8 1,094,111 + -0.2 1,094,116 - -0.7
Or see this region's nucleotide sequence