Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1056

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcpcE and cpcF are separated by 6 nucleotidescpcF and Synpcc7942_1056 are separated by 26 nucleotidesSynpcc7942_1056 and thiE are separated by 38 nucleotides Synpcc7942_1054: cpcE - PBS lyase HEAT-like repeat, at 1,065,228 to 1,066,049 cpcE Synpcc7942_1055: cpcF - phycocyanin alpha-subunit phycocyanobilin lyase, at 1,066,056 to 1,066,679 cpcF Synpcc7942_1056: Synpcc7942_1056 - transcriptional regulator, XRE family, at 1,066,706 to 1,067,488 _1056 Synpcc7942_1057: thiE - thiamine-phosphate pyrophosphorylase, at 1,067,527 to 1,068,558 thiE Position (kb) 1066 1067 1068Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1066.053 kb on + strandat 1066.067 kb on + strandat 1066.073 kb on - strandat 1066.075 kb on - strandat 1066.300 kb on - strand, within cpcFat 1066.302 kb on - strand, within cpcFat 1066.406 kb on - strand, within cpcFat 1066.477 kb on + strand, within cpcFat 1066.682 kb on + strandat 1066.702 kb on - strandat 1066.720 kb on + strandat 1066.730 kb on + strandat 1066.733 kb on + strandat 1066.746 kb on - strandat 1066.757 kb on - strandat 1066.775 kb on + strandat 1066.805 kb on + strand, within Synpcc7942_1056at 1066.805 kb on + strand, within Synpcc7942_1056at 1066.805 kb on + strand, within Synpcc7942_1056at 1066.813 kb on - strand, within Synpcc7942_1056at 1066.828 kb on - strand, within Synpcc7942_1056at 1066.829 kb on - strand, within Synpcc7942_1056at 1066.830 kb on + strand, within Synpcc7942_1056at 1066.838 kb on - strand, within Synpcc7942_1056at 1066.856 kb on + strand, within Synpcc7942_1056at 1066.856 kb on + strand, within Synpcc7942_1056at 1066.863 kb on - strand, within Synpcc7942_1056at 1066.875 kb on - strand, within Synpcc7942_1056at 1066.888 kb on + strand, within Synpcc7942_1056at 1066.898 kb on - strand, within Synpcc7942_1056at 1066.910 kb on - strand, within Synpcc7942_1056at 1066.962 kb on + strand, within Synpcc7942_1056at 1066.972 kb on + strand, within Synpcc7942_1056at 1066.988 kb on - strand, within Synpcc7942_1056at 1067.032 kb on + strand, within Synpcc7942_1056at 1067.032 kb on - strand, within Synpcc7942_1056at 1067.051 kb on - strand, within Synpcc7942_1056at 1067.058 kb on + strand, within Synpcc7942_1056at 1067.071 kb on + strand, within Synpcc7942_1056at 1067.103 kb on - strand, within Synpcc7942_1056at 1067.111 kb on - strand, within Synpcc7942_1056at 1067.130 kb on + strand, within Synpcc7942_1056at 1067.138 kb on - strand, within Synpcc7942_1056at 1067.151 kb on + strand, within Synpcc7942_1056at 1067.170 kb on + strand, within Synpcc7942_1056at 1067.185 kb on + strand, within Synpcc7942_1056at 1067.193 kb on - strand, within Synpcc7942_1056at 1067.221 kb on + strand, within Synpcc7942_1056at 1067.227 kb on - strand, within Synpcc7942_1056at 1067.262 kb on - strand, within Synpcc7942_1056at 1067.278 kb on - strand, within Synpcc7942_1056at 1067.295 kb on - strand, within Synpcc7942_1056at 1067.300 kb on + strand, within Synpcc7942_1056at 1067.316 kb on - strand, within Synpcc7942_1056at 1067.379 kb on - strand, within Synpcc7942_1056at 1067.390 kb on + strand, within Synpcc7942_1056at 1067.416 kb on + strandat 1067.420 kb on - strandat 1067.454 kb on + strandat 1067.461 kb on + strandat 1067.466 kb on + strandat 1067.466 kb on + strandat 1067.466 kb on + strandat 1067.469 kb on - strandat 1067.469 kb on - strandat 1067.469 kb on - strandat 1067.474 kb on - strandat 1067.497 kb on + strandat 1067.497 kb on + strandat 1067.511 kb on + strandat 1067.511 kb on + strandat 1067.511 kb on + strandat 1067.519 kb on - strandat 1067.526 kb on + strandat 1067.539 kb on - strandat 1067.539 kb on - strandat 1067.562 kb on - strandat 1067.925 kb on - strand, within thiE

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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1,066,053 + +1.2
1,066,067 + +0.1
1,066,073 - +1.2
1,066,075 - +2.4
1,066,300 - cpcF Synpcc7942_1055 0.39 -0.5
1,066,302 - cpcF Synpcc7942_1055 0.39 -0.7
1,066,406 - cpcF Synpcc7942_1055 0.56 +1.1
1,066,477 + cpcF Synpcc7942_1055 0.67 -1.1
1,066,682 + -3.9
1,066,702 - -2.2
1,066,720 + -1.6
1,066,730 + -3.3
1,066,733 + +0.3
1,066,746 - -3.1
1,066,757 - -1.8
1,066,775 + -0.5
1,066,805 + Synpcc7942_1056 0.13 -2.6
1,066,805 + Synpcc7942_1056 0.13 -1.1
1,066,805 + Synpcc7942_1056 0.13 -1.9
1,066,813 - Synpcc7942_1056 0.14 -1.4
1,066,828 - Synpcc7942_1056 0.16 -4.0
1,066,829 - Synpcc7942_1056 0.16 -1.6
1,066,830 + Synpcc7942_1056 0.16 -4.4
1,066,838 - Synpcc7942_1056 0.17 -1.1
1,066,856 + Synpcc7942_1056 0.19 -0.2
1,066,856 + Synpcc7942_1056 0.19 -3.6
1,066,863 - Synpcc7942_1056 0.20 -2.2
1,066,875 - Synpcc7942_1056 0.22 -0.8
1,066,888 + Synpcc7942_1056 0.23 -1.5
1,066,898 - Synpcc7942_1056 0.25 -1.5
1,066,910 - Synpcc7942_1056 0.26 +0.6
1,066,962 + Synpcc7942_1056 0.33 -0.7
1,066,972 + Synpcc7942_1056 0.34 -2.1
1,066,988 - Synpcc7942_1056 0.36 -2.9
1,067,032 + Synpcc7942_1056 0.42 -0.3
1,067,032 - Synpcc7942_1056 0.42 -1.8
1,067,051 - Synpcc7942_1056 0.44 -1.4
1,067,058 + Synpcc7942_1056 0.45 -2.6
1,067,071 + Synpcc7942_1056 0.47 -3.9
1,067,103 - Synpcc7942_1056 0.51 -1.5
1,067,111 - Synpcc7942_1056 0.52 -2.9
1,067,130 + Synpcc7942_1056 0.54 -2.2
1,067,138 - Synpcc7942_1056 0.55 -0.1
1,067,151 + Synpcc7942_1056 0.57 -3.0
1,067,170 + Synpcc7942_1056 0.59 -2.9
1,067,185 + Synpcc7942_1056 0.61 -2.4
1,067,193 - Synpcc7942_1056 0.62 -2.1
1,067,221 + Synpcc7942_1056 0.66 -3.6
1,067,227 - Synpcc7942_1056 0.67 -2.6
1,067,262 - Synpcc7942_1056 0.71 -3.8
1,067,278 - Synpcc7942_1056 0.73 -2.8
1,067,295 - Synpcc7942_1056 0.75 -0.9
1,067,300 + Synpcc7942_1056 0.76 -2.8
1,067,316 - Synpcc7942_1056 0.78 -2.2
1,067,379 - Synpcc7942_1056 0.86 -4.5
1,067,390 + Synpcc7942_1056 0.87 -1.9
1,067,416 + -0.2
1,067,420 - -2.2
1,067,454 + -2.5
1,067,461 + -2.1
1,067,466 + -2.0
1,067,466 + -0.4
1,067,466 + -1.0
1,067,469 - -0.9
1,067,469 - -3.6
1,067,469 - +1.4
1,067,474 - -2.2
1,067,497 + -2.7
1,067,497 + -0.4
1,067,511 + -1.5
1,067,511 + -1.5
1,067,511 + -1.8
1,067,519 - +0.5
1,067,526 + +1.9
1,067,539 - +0.8
1,067,539 - -3.1
1,067,562 - +2.0
1,067,925 - thiE Synpcc7942_1057 0.39 -2.2

Or see this region's nucleotide sequence