Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1015

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
1,027,449	-		Synpcc7942_1014	0.65	-1.9
1,027,496	+		Synpcc7942_1014	0.67	-3.5
1,027,501	-		Synpcc7942_1014	0.67	-2.1
1,027,567	+		Synpcc7942_1014	0.70	-1.4
1,027,580	-		Synpcc7942_1014	0.70	-3.7
1,027,588	-		Synpcc7942_1014	0.70	-1.5
1,027,588	-		Synpcc7942_1014	0.70	-1.3
1,027,619	-		Synpcc7942_1014	0.71	-3.2
1,027,628	+		Synpcc7942_1014	0.72	-1.9
1,027,628	+		Synpcc7942_1014	0.72	-3.2
1,027,670	+		Synpcc7942_1014	0.73	-1.8
1,027,676	-		Synpcc7942_1014	0.73	-1.9
1,027,725	-				-1.4
1,027,729	+		Synpcc7942_1014	0.75	-0.7
1,027,732	-		Synpcc7942_1014	0.75	-2.4
1,027,732	-		Synpcc7942_1014	0.75	-4.2
1,027,732	-		Synpcc7942_1014	0.75	-4.2
1,027,747	+		Synpcc7942_1014	0.76	-3.5
1,027,758	+		Synpcc7942_1014	0.76	-2.1
1,027,765	-				-1.4
1,027,767	+		Synpcc7942_1014	0.77	-1.4
1,027,775	-		Synpcc7942_1014	0.77	+1.2
1,027,775	-		Synpcc7942_1014	0.77	-2.1
1,027,779	+		Synpcc7942_1014	0.77	-3.8
1,027,785	-		Synpcc7942_1014	0.77	-3.3
1,027,787	-		Synpcc7942_1014	0.77	-3.4
1,027,812	+		Synpcc7942_1014	0.78	-0.3
1,027,813	+		Synpcc7942_1014	0.78	-2.0
1,027,821	-		Synpcc7942_1014	0.79	-2.3
1,027,840	+		Synpcc7942_1014	0.79	-1.9
1,027,843	-		Synpcc7942_1014	0.79	-1.6
1,027,857	+		Synpcc7942_1014	0.80	-3.5
1,027,865	-		Synpcc7942_1014	0.80	-1.3
1,027,865	-		Synpcc7942_1014	0.80	-1.9
1,027,865	-		Synpcc7942_1014	0.80	-1.4
1,027,876	-		Synpcc7942_1014	0.81	-3.8
1,027,888	-		Synpcc7942_1014	0.81	-1.6
1,027,888	-		Synpcc7942_1014	0.81	-5.1
1,027,888	-		Synpcc7942_1014	0.81	-3.6
1,027,890	+		Synpcc7942_1014	0.81	-2.0
1,027,916	-		Synpcc7942_1014	0.82	-4.1
1,027,924	+		Synpcc7942_1014	0.82	-0.3
1,027,924	+		Synpcc7942_1014	0.82	-0.9
1,027,932	-		Synpcc7942_1014	0.83	-5.1
1,027,986	+		Synpcc7942_1014	0.85	-3.2
1,028,001	+		Synpcc7942_1014	0.85	-0.9
1,028,006	+		Synpcc7942_1014	0.85	-1.9
1,028,023	+		Synpcc7942_1014	0.86	+0.8
1,028,030	+		Synpcc7942_1014	0.86	-1.8
1,028,030	+		Synpcc7942_1014	0.86	-3.1
1,028,030	+		Synpcc7942_1014	0.86	+2.9
1,028,030	+		Synpcc7942_1014	0.86	-2.9
1,028,091	-		Synpcc7942_1014	0.88	-3.1
1,028,112	+		Synpcc7942_1014	0.89	-1.9
1,028,114	+		Synpcc7942_1014	0.89	-1.9
1,028,114	+		Synpcc7942_1014	0.89	-3.0
1,028,116	+		Synpcc7942_1014	0.89	-0.3
1,028,151	-				-0.8
1,028,185	-				-1.1
1,028,245	-				-3.6
1,028,250	-				-2.9
1,028,252	+				-2.8
1,028,318	+				-1.6
1,028,341	+				-1.2
1,028,419	+				-1.5
1,028,421	+				-0.9
1,028,456	+				-1.6
1,028,480	+				-2.0
1,028,498	-				+3.6
1,028,528	+				+2.0
1,028,533	-				+1.6
1,028,538	+				-0.8
1,028,538	+				-1.2
1,028,546	-				-0.5
1,028,562	+				+4.4
1,028,562	+				-0.8
1,028,577	-				+1.6
1,028,577	-				-1.8
1,028,589	-				-3.3
1,028,598	+				+1.9
1,028,598	+				+3.0
1,028,598	+				+1.9
1,028,598	+				-3.9
1,028,598	+				+4.4
1,028,598	+				-0.9
1,028,598	+				+5.5
1,028,600	+				-3.0
1,028,600	+				-0.8
1,028,603	+				+1.9
1,028,603	+				+2.1
1,028,606	-				-2.3
1,028,606	-				+1.0
1,028,606	-				+1.4
1,028,606	-				+0.4
1,028,608	+				+8.4
1,028,616	-				-0.6
1,028,717	+		Synpcc7942_1015	0.12	-2.4
1,028,730	-		Synpcc7942_1015	0.12	-0.8
1,028,846	+		Synpcc7942_1015	0.17	-0.9
1,028,889	-		Synpcc7942_1015	0.19	-1.7
1,029,050	-		Synpcc7942_1015	0.25	-0.3
1,029,127	-		Synpcc7942_1015	0.28	-2.1
1,029,142	+		Synpcc7942_1015	0.29	-0.7
1,029,147	+				-0.3
1,029,152	+		Synpcc7942_1015	0.29	-1.6
1,029,157	+		Synpcc7942_1015	0.29	-1.6
1,029,160	-		Synpcc7942_1015	0.29	-1.0
1,029,172	-		Synpcc7942_1015	0.30	-2.9
1,029,184	+		Synpcc7942_1015	0.30	-2.9
1,029,197	+		Synpcc7942_1015	0.31	-2.1
1,029,232	-		Synpcc7942_1015	0.32	-2.8
1,029,244	+		Synpcc7942_1015	0.33	-2.0
1,029,244	+		Synpcc7942_1015	0.33	-2.1
1,029,249	+		Synpcc7942_1015	0.33	-1.2
1,029,257	+		Synpcc7942_1015	0.33	-1.4
1,029,293	+		Synpcc7942_1015	0.35	+1.1
1,029,302	-		Synpcc7942_1015	0.35	-2.5
1,029,328	+		Synpcc7942_1015	0.36	-1.5
1,029,330	+		Synpcc7942_1015	0.36	-2.8
1,029,343	+		Synpcc7942_1015	0.37	-0.4
1,029,349	+		Synpcc7942_1015	0.37	-2.1
1,029,357	-		Synpcc7942_1015	0.37	-4.1
1,029,357	-		Synpcc7942_1015	0.37	-2.6
1,029,363	+		Synpcc7942_1015	0.38	-1.1
1,029,377	+		Synpcc7942_1015	0.38	-4.1
1,029,377	+		Synpcc7942_1015	0.38	-3.1
1,029,394	-		Synpcc7942_1015	0.39	-1.7
1,029,425	-		Synpcc7942_1015	0.40	-2.0
1,029,440	+		Synpcc7942_1015	0.41	-3.5
1,029,440	+		Synpcc7942_1015	0.41	-1.4
1,029,440	+		Synpcc7942_1015	0.41	-2.2
1,029,440	+				-0.9
1,029,440	+		Synpcc7942_1015	0.41	-0.4
1,029,448	-		Synpcc7942_1015	0.41	-3.1
1,029,448	-		Synpcc7942_1015	0.41	-0.7
1,029,448	-		Synpcc7942_1015	0.41	-1.9
1,029,448	-		Synpcc7942_1015	0.41	-1.6
1,029,448	-		Synpcc7942_1015	0.41	-0.9
1,029,448	-		Synpcc7942_1015	0.41	-1.6
1,029,448	-		Synpcc7942_1015	0.41	-1.3
1,029,448	-		Synpcc7942_1015	0.41	-2.3
1,029,448	-		Synpcc7942_1015	0.41	-2.6
1,029,469	-		Synpcc7942_1015	0.42	-3.6
1,029,483	+		Synpcc7942_1015	0.42	-1.3
1,029,483	+		Synpcc7942_1015	0.42	-1.5
1,029,491	-		Synpcc7942_1015	0.43	-1.3
1,029,491	-		Synpcc7942_1015	0.43	-1.1
1,029,491	-		Synpcc7942_1015	0.43	-2.9
1,029,498	-		Synpcc7942_1015	0.43	-1.6
1,029,522	+		Synpcc7942_1015	0.44	-2.6
1,029,540	+		Synpcc7942_1015	0.45	+0.3
1,029,546	+		Synpcc7942_1015	0.45	-2.1
1,029,548	+		Synpcc7942_1015	0.45	-2.9
1,029,554	-		Synpcc7942_1015	0.45	-2.9
1,029,592	-		Synpcc7942_1015	0.47	-2.1
1,029,603	-		Synpcc7942_1015	0.47	-1.6
1,029,632	-		Synpcc7942_1015	0.48	-2.6
1,029,642	-		Synpcc7942_1015	0.49	-3.3
1,029,650	+		Synpcc7942_1015	0.49	-3.6
1,029,678	+		Synpcc7942_1015	0.50	-2.8
1,029,683	+		Synpcc7942_1015	0.50	-1.1
1,029,731	+		Synpcc7942_1015	0.52	-1.4
1,029,740	-		Synpcc7942_1015	0.52	-0.9
1,029,763	-		Synpcc7942_1015	0.53	-2.8
1,029,771	+		Synpcc7942_1015	0.54	-2.1
1,029,771	+		Synpcc7942_1015	0.54	-3.2
1,029,778	+		Synpcc7942_1015	0.54	-0.9
1,029,807	+		Synpcc7942_1015	0.55	+0.1
1,029,834	+		Synpcc7942_1015	0.56	+1.5
1,029,842	-		Synpcc7942_1015	0.57	-1.8
1,029,848	-		Synpcc7942_1015	0.57	-1.8
1,029,848	-		Synpcc7942_1015	0.57	-3.3
1,029,848	-		Synpcc7942_1015	0.57	-3.1
1,029,894	+		Synpcc7942_1015	0.59	-1.6
1,029,907	-		Synpcc7942_1015	0.59	-3.1
1,029,907	-		Synpcc7942_1015	0.59	-2.1
1,029,918	+		Synpcc7942_1015	0.60	+2.5
1,029,936	+		Synpcc7942_1015	0.60	-3.2
1,029,957	+		Synpcc7942_1015	0.61	-2.5
1,029,975	-		Synpcc7942_1015	0.62	-0.8
1,030,020	-		Synpcc7942_1015	0.64	-2.8
1,030,042	-		Synpcc7942_1015	0.64	-4.2
1,030,051	+		Synpcc7942_1015	0.65	-2.9
1,030,069	-		Synpcc7942_1015	0.66	-3.5
1,030,069	-		Synpcc7942_1015	0.66	-2.9
1,030,084	-		Synpcc7942_1015	0.66	-0.8
1,030,084	-				+0.1
1,030,094	-		Synpcc7942_1015	0.67	+0.6
1,030,150	-		Synpcc7942_1015	0.69	-1.5
1,030,161	+		Synpcc7942_1015	0.69	-2.0
1,030,195	+		Synpcc7942_1015	0.71	-2.2
1,030,256	-		Synpcc7942_1015	0.73	-2.7
1,030,273	-		Synpcc7942_1015	0.74	-2.6
1,030,322	-		Synpcc7942_1015	0.76	-2.1
1,030,322	-		Synpcc7942_1015	0.76	-3.3
1,030,388	-				-1.3
1,030,449	-		Synpcc7942_1015	0.81	-2.3
1,030,510	+		Synpcc7942_1015	0.83	-0.9
1,030,513	-		Synpcc7942_1015	0.83	-3.6
1,030,518	-		Synpcc7942_1015	0.83	-0.3
1,030,537	+		Synpcc7942_1015	0.84	-3.8
1,030,552	+		Synpcc7942_1015	0.85	-2.5
1,030,558	-		Synpcc7942_1015	0.85	-1.9
1,030,637	-		Synpcc7942_1015	0.88	-2.6
1,030,673	-				-1.1
1,030,684	-		Synpcc7942_1015	0.90	-2.8
1,030,686	+				-0.1
1,030,731	+				-4.1
1,030,744	-				-2.5
1,030,749	-				+0.9
1,030,774	-				-3.0
1,030,781	+				-0.2
1,030,784	-				-0.2
1,030,789	-				-1.4
1,030,789	-				+2.1
1,030,825	+				-1.5
1,030,825	+				-0.7
1,030,825	+				-2.1
1,030,825	+				-2.0
1,030,833	-				-1.6
1,030,833	-				-1.8
1,030,833	-				-2.5
1,030,837	+				-1.2
1,030,841	+				-2.9
1,030,861	+				-4.0
1,030,878	-				-2.5
1,030,878	-				+1.3
1,030,881	+				-3.2
1,030,881	+				-5.1
1,030,903	-				-1.1
1,030,941	+				-1.4
1,030,950	+				-0.9
1,030,958	-				-1.6
1,030,960	+				-2.9
1,030,963	-				-2.4
1,030,965	+				-1.3
1,030,965	+				+0.1
1,030,965	+				-0.6
1,030,965	+				-1.8
1,030,968	-				-0.6
1,030,968	-				-1.2
1,030,972	+				-0.6
1,030,973	-				-2.7
1,030,973	-				-2.0
1,030,973	-				-3.2
1,030,973	-				-0.4
1,030,975	-				-0.8
1,030,980	-				-2.1
1,030,999	-				-0.8
1,031,000	-				-1.9
1,031,031	+	cheW	Synpcc7942_1016	0.16	-1.7
1,031,065	-	cheW	Synpcc7942_1016	0.23	-1.6
1,031,075	-	cheW	Synpcc7942_1016	0.25	-2.6
1,031,098	+	cheW	Synpcc7942_1016	0.30	-1.5
1,031,098	+	cheW	Synpcc7942_1016	0.30	-0.1
1,031,136	+	cheW	Synpcc7942_1016	0.38	+4.2
1,031,144	-	cheW	Synpcc7942_1016	0.40	+1.1
1,031,144	-	cheW	Synpcc7942_1016	0.40	-0.5
1,031,166	-	cheW	Synpcc7942_1016	0.44	-2.7
1,031,209	+	cheW	Synpcc7942_1016	0.53	-1.1
1,031,266	+	cheW	Synpcc7942_1016	0.65	+0.7
1,031,274	-	cheW	Synpcc7942_1016	0.66	-1.9
1,031,292	-	cheW	Synpcc7942_1016	0.70	-1.9
1,031,309	-	cheW	Synpcc7942_1016	0.74	-2.1
1,031,431	+				+0.1
1,031,431	+				+1.4
1,031,453	+				-1.1
1,031,454	+				-0.4
1,031,461	-				+0.8
1,031,471	+				-1.3
1,031,483	-				-1.8
1,031,484	+				+0.9
1,031,540	-				-1.1
1,031,544	+				+2.1
1,031,571	-				+1.5
1,031,574	-				+0.8
1,031,574	-				-0.9
1,031,580	+				-0.4
1,031,602	+				-1.0
1,031,611	+				+0.7
1,031,618	-				-2.0
1,031,623	+				-0.5
1,031,633	+				+1.2
1,031,638	+				+1.9
1,031,653	+				+2.8
1,031,700	-				+0.9
1,031,708	+				+1.2
1,031,738	-				-3.3
1,031,775	+		Synpcc7942_1017	0.10	-0.8
1,031,775	-		Synpcc7942_1017	0.10	-0.9
1,031,776	+		Synpcc7942_1017	0.10	-0.6
1,031,793	-		Synpcc7942_1017	0.13	-1.6
1,031,796	+		Synpcc7942_1017	0.13	-1.5
1,031,819	-		Synpcc7942_1017	0.16	+1.4
1,031,832	-		Synpcc7942_1017	0.18	+0.8
1,031,832	-		Synpcc7942_1017	0.18	-1.1
1,031,851	+		Synpcc7942_1017	0.20	+1.8
1,031,861	+		Synpcc7942_1017	0.22	+1.4
1,031,861	+		Synpcc7942_1017	0.22	+2.1
1,031,868	+				+3.3
1,031,876	-		Synpcc7942_1017	0.23	-2.3
1,031,878	+		Synpcc7942_1017	0.24	+2.9
1,031,886	-		Synpcc7942_1017	0.25	-3.9
1,031,892	+		Synpcc7942_1017	0.26	-0.8
1,031,897	+		Synpcc7942_1017	0.26	-0.0
1,031,899	+		Synpcc7942_1017	0.27	-0.6