Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1014

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
1,024,658	+	sphR	Synpcc7942_1012	0.89	-1.6
1,024,658	+	sphR	Synpcc7942_1012	0.89	-3.3
1,024,659	+	sphR	Synpcc7942_1012	0.89	-1.6
1,024,666	-				-2.7
1,024,721	+				+0.7
1,024,730	+				-0.8
1,024,730	+				+0.8
1,024,730	+				-1.5
1,024,738	-				+0.8
1,024,738	-				-0.9
1,024,756	+				+0.9
1,024,758	-				-1.6
1,024,758	-				+0.2
1,024,764	+				+1.1
1,024,766	+				+0.0
1,024,766	+				+0.1
1,024,774	+				+1.4
1,024,782	-				-0.3
1,024,782	-				-1.1
1,024,798	+				-2.2
1,024,800	+				-1.8
1,024,813	+				+0.6
1,024,815	-				+1.1
1,024,821	-				-0.2
1,024,822	-				-0.8
1,024,827	+				-2.4
1,024,859	+				+2.2
1,024,906	-				-2.6
1,024,915	-				-0.3
1,025,013	+				-0.4
1,025,013	+				-1.9
1,025,021	-				+1.3
1,025,082	-				-0.8
1,025,115	-				+1.2
1,025,127	+				-0.7
1,025,151	-				-1.2
1,025,156	+				-1.8
1,025,156	+				+5.0
1,025,156	+				+0.5
1,025,156	+				+2.3
1,025,164	-				-0.8
1,025,164	-				-2.5
1,025,166	+				-0.9
1,025,166	+				-0.7
1,025,190	+				-4.4
1,025,213	-				-1.4
1,025,215	+				-0.5
1,025,372	+				+1.3
1,025,475	+		Synpcc7942_1013	0.36	-2.3
1,025,535	+		Synpcc7942_1013	0.62	-2.3
1,025,635	-				-1.3
1,025,682	+				-0.2
1,025,708	+				-3.7
1,025,775	+				-3.1
1,025,783	-				-2.3
1,025,790	+				-0.8
1,025,798	-				-0.5
1,025,801	+				-1.5
1,025,809	-				-2.8
1,025,820	+				-1.3
1,025,820	+				-2.6
1,025,820	+				-2.6
1,025,828	-				-2.4
1,025,877	+				-3.2
1,025,882	+				-1.9
1,025,882	+				-2.9
1,025,950	+		Synpcc7942_1014	0.12	-2.8
1,026,006	+		Synpcc7942_1014	0.14	-1.3
1,026,014	-				+0.2
1,026,035	-		Synpcc7942_1014	0.15	-3.2
1,026,035	-		Synpcc7942_1014	0.15	-0.9
1,026,058	+				-2.3
1,026,081	-		Synpcc7942_1014	0.16	+1.1
1,026,101	-		Synpcc7942_1014	0.17	-3.0
1,026,118	+		Synpcc7942_1014	0.18	-1.4
1,026,176	+		Synpcc7942_1014	0.20	-4.1
1,026,176	+		Synpcc7942_1014	0.20	-3.3
1,026,235	+		Synpcc7942_1014	0.22	-2.2
1,026,248	+		Synpcc7942_1014	0.22	-2.8
1,026,248	+		Synpcc7942_1014	0.22	+1.6
1,026,286	+		Synpcc7942_1014	0.24	-1.4
1,026,302	-		Synpcc7942_1014	0.24	-1.4
1,026,341	+		Synpcc7942_1014	0.26	-1.9
1,026,349	-		Synpcc7942_1014	0.26	-2.9
1,026,438	-		Synpcc7942_1014	0.29	-1.4
1,026,441	+		Synpcc7942_1014	0.29	-4.0
1,026,449	-		Synpcc7942_1014	0.29	-2.2
1,026,498	-		Synpcc7942_1014	0.31	-1.9
1,026,499	-		Synpcc7942_1014	0.31	-3.1
1,026,532	+		Synpcc7942_1014	0.32	-3.3
1,026,539	-		Synpcc7942_1014	0.33	-3.0
1,026,540	-		Synpcc7942_1014	0.33	-1.7
1,026,540	-		Synpcc7942_1014	0.33	-2.8
1,026,545	-		Synpcc7942_1014	0.33	-3.1
1,026,555	+		Synpcc7942_1014	0.33	-3.8
1,026,558	-		Synpcc7942_1014	0.33	-0.5
1,026,609	+		Synpcc7942_1014	0.35	-1.8
1,026,609	+				-1.8
1,026,609	+		Synpcc7942_1014	0.35	-2.4
1,026,623	-		Synpcc7942_1014	0.36	-4.4
1,026,656	-		Synpcc7942_1014	0.37	-0.5
1,026,680	+				-1.5
1,026,681	+		Synpcc7942_1014	0.38	-0.8
1,026,681	-		Synpcc7942_1014	0.38	-3.8
1,026,689	-		Synpcc7942_1014	0.38	-3.9
1,026,693	+		Synpcc7942_1014	0.38	-3.0
1,026,717	+		Synpcc7942_1014	0.39	-3.1
1,026,717	+		Synpcc7942_1014	0.39	-1.9
1,026,727	+		Synpcc7942_1014	0.39	-0.9
1,026,728	+		Synpcc7942_1014	0.39	-2.9
1,026,728	+		Synpcc7942_1014	0.39	-2.6
1,026,752	+		Synpcc7942_1014	0.40	-2.6
1,026,760	-		Synpcc7942_1014	0.41	-1.2
1,026,814	+		Synpcc7942_1014	0.43	-1.5
1,026,814	+		Synpcc7942_1014	0.43	-2.5
1,026,822	-		Synpcc7942_1014	0.43	-3.1
1,026,847	-		Synpcc7942_1014	0.44	-1.9
1,026,906	-		Synpcc7942_1014	0.46	-2.5
1,026,922	+		Synpcc7942_1014	0.46	-2.4
1,026,922	+		Synpcc7942_1014	0.46	-3.6
1,027,039	+		Synpcc7942_1014	0.51	-3.9
1,027,039	-		Synpcc7942_1014	0.51	-3.6
1,027,053	+				-0.5
1,027,080	+		Synpcc7942_1014	0.52	-1.4
1,027,104	+		Synpcc7942_1014	0.53	-3.2
1,027,149	-		Synpcc7942_1014	0.55	-2.9
1,027,237	-		Synpcc7942_1014	0.58	-3.2
1,027,237	-		Synpcc7942_1014	0.58	-3.5
1,027,237	-		Synpcc7942_1014	0.58	+2.3
1,027,252	-		Synpcc7942_1014	0.58	-1.9
1,027,328	+		Synpcc7942_1014	0.61	-1.4
1,027,345	+		Synpcc7942_1014	0.62	-0.3
1,027,354	+		Synpcc7942_1014	0.62	-3.9
1,027,383	+		Synpcc7942_1014	0.63	-2.0
1,027,391	-		Synpcc7942_1014	0.63	-4.2
1,027,409	-		Synpcc7942_1014	0.64	-3.0
1,027,449	-		Synpcc7942_1014	0.65	-1.9
1,027,496	+		Synpcc7942_1014	0.67	-3.5
1,027,501	-		Synpcc7942_1014	0.67	-2.1
1,027,567	+		Synpcc7942_1014	0.70	-1.4
1,027,580	-		Synpcc7942_1014	0.70	-3.7
1,027,588	-		Synpcc7942_1014	0.70	-1.5
1,027,588	-		Synpcc7942_1014	0.70	-1.3
1,027,619	-		Synpcc7942_1014	0.71	-3.2
1,027,628	+		Synpcc7942_1014	0.72	-1.9
1,027,628	+		Synpcc7942_1014	0.72	-3.2
1,027,670	+		Synpcc7942_1014	0.73	-1.8
1,027,676	-		Synpcc7942_1014	0.73	-1.9
1,027,725	-				-1.4
1,027,729	+		Synpcc7942_1014	0.75	-0.7
1,027,732	-		Synpcc7942_1014	0.75	-2.4
1,027,732	-		Synpcc7942_1014	0.75	-4.2
1,027,732	-		Synpcc7942_1014	0.75	-4.2
1,027,747	+		Synpcc7942_1014	0.76	-3.5
1,027,758	+		Synpcc7942_1014	0.76	-2.1
1,027,765	-				-1.4
1,027,767	+		Synpcc7942_1014	0.77	-1.4
1,027,775	-		Synpcc7942_1014	0.77	+1.2
1,027,775	-		Synpcc7942_1014	0.77	-2.1
1,027,779	+		Synpcc7942_1014	0.77	-3.8
1,027,785	-		Synpcc7942_1014	0.77	-3.3
1,027,787	-		Synpcc7942_1014	0.77	-3.4
1,027,812	+		Synpcc7942_1014	0.78	-0.3
1,027,813	+		Synpcc7942_1014	0.78	-2.0
1,027,821	-		Synpcc7942_1014	0.79	-2.3
1,027,840	+		Synpcc7942_1014	0.79	-1.9
1,027,843	-		Synpcc7942_1014	0.79	-1.6
1,027,857	+		Synpcc7942_1014	0.80	-3.5
1,027,865	-		Synpcc7942_1014	0.80	-1.3
1,027,865	-		Synpcc7942_1014	0.80	-1.9
1,027,865	-		Synpcc7942_1014	0.80	-1.4
1,027,876	-		Synpcc7942_1014	0.81	-3.8
1,027,888	-		Synpcc7942_1014	0.81	-1.6
1,027,888	-		Synpcc7942_1014	0.81	-5.1
1,027,888	-		Synpcc7942_1014	0.81	-3.6
1,027,890	+		Synpcc7942_1014	0.81	-2.0
1,027,916	-		Synpcc7942_1014	0.82	-4.1
1,027,924	+		Synpcc7942_1014	0.82	-0.3
1,027,924	+		Synpcc7942_1014	0.82	-0.9
1,027,932	-		Synpcc7942_1014	0.83	-5.1
1,027,986	+		Synpcc7942_1014	0.85	-3.2
1,028,001	+		Synpcc7942_1014	0.85	-0.9
1,028,006	+		Synpcc7942_1014	0.85	-1.9
1,028,023	+		Synpcc7942_1014	0.86	+0.8
1,028,030	+		Synpcc7942_1014	0.86	-1.8
1,028,030	+		Synpcc7942_1014	0.86	-3.1
1,028,030	+		Synpcc7942_1014	0.86	+2.9
1,028,030	+		Synpcc7942_1014	0.86	-2.9
1,028,091	-		Synpcc7942_1014	0.88	-3.1
1,028,112	+		Synpcc7942_1014	0.89	-1.9
1,028,114	+		Synpcc7942_1014	0.89	-1.9
1,028,114	+		Synpcc7942_1014	0.89	-3.0
1,028,116	+		Synpcc7942_1014	0.89	-0.3
1,028,151	-				-0.8
1,028,185	-				-1.1
1,028,245	-				-3.6
1,028,250	-				-2.9
1,028,252	+				-2.8
1,028,318	+				-1.6
1,028,341	+				-1.2
1,028,419	+				-1.5
1,028,421	+				-0.9
1,028,456	+				-1.6
1,028,480	+				-2.0
1,028,498	-				+3.6
1,028,528	+				+2.0
1,028,533	-				+1.6
1,028,538	+				-0.8
1,028,538	+				-1.2
1,028,546	-				-0.5
1,028,562	+				+4.4
1,028,562	+				-0.8
1,028,577	-				+1.6
1,028,577	-				-1.8
1,028,589	-				-3.3
1,028,598	+				+1.9
1,028,598	+				+3.0
1,028,598	+				+1.9
1,028,598	+				-3.9
1,028,598	+				+4.4
1,028,598	+				-0.9
1,028,598	+				+5.5
1,028,600	+				-3.0
1,028,600	+				-0.8
1,028,603	+				+1.9
1,028,603	+				+2.1
1,028,606	-				-2.3
1,028,606	-				+1.0
1,028,606	-				+1.4
1,028,606	-				+0.4
1,028,608	+				+8.4
1,028,616	-				-0.6
1,028,717	+		Synpcc7942_1015	0.12	-2.4
1,028,730	-		Synpcc7942_1015	0.12	-0.8
1,028,846	+		Synpcc7942_1015	0.17	-0.9
1,028,889	-		Synpcc7942_1015	0.19	-1.7
1,029,050	-		Synpcc7942_1015	0.25	-0.3
1,029,127	-		Synpcc7942_1015	0.28	-2.1
1,029,142	+		Synpcc7942_1015	0.29	-0.7
1,029,147	+				-0.3
1,029,152	+		Synpcc7942_1015	0.29	-1.6
1,029,157	+		Synpcc7942_1015	0.29	-1.6
1,029,160	-		Synpcc7942_1015	0.29	-1.0
1,029,172	-		Synpcc7942_1015	0.30	-2.9
1,029,184	+		Synpcc7942_1015	0.30	-2.9
1,029,197	+		Synpcc7942_1015	0.31	-2.1
1,029,232	-		Synpcc7942_1015	0.32	-2.8
1,029,244	+		Synpcc7942_1015	0.33	-2.0
1,029,244	+		Synpcc7942_1015	0.33	-2.1
1,029,249	+		Synpcc7942_1015	0.33	-1.2
1,029,257	+		Synpcc7942_1015	0.33	-1.4
1,029,293	+		Synpcc7942_1015	0.35	+1.1
1,029,302	-		Synpcc7942_1015	0.35	-2.5
1,029,328	+		Synpcc7942_1015	0.36	-1.5
1,029,330	+		Synpcc7942_1015	0.36	-2.8
1,029,343	+		Synpcc7942_1015	0.37	-0.4
1,029,349	+		Synpcc7942_1015	0.37	-2.1
1,029,357	-		Synpcc7942_1015	0.37	-4.1
1,029,357	-		Synpcc7942_1015	0.37	-2.6
1,029,363	+		Synpcc7942_1015	0.38	-1.1
1,029,377	+		Synpcc7942_1015	0.38	-4.1
1,029,377	+		Synpcc7942_1015	0.38	-3.1
1,029,394	-		Synpcc7942_1015	0.39	-1.7