Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0993 and Synpcc7942_0994 are separated by 31 nucleotides Synpcc7942_0994 and ycf20 are separated by 62 nucleotides ycf20 and Synpcc7942_0996 are separated by 49 nucleotides
Synpcc7942_0993: Synpcc7942_0993 - hypothetical protein, at 1,001,766 to 1,003,145
_0993
Synpcc7942_0994: Synpcc7942_0994 - hypothetical protein, at 1,003,177 to 1,003,746
_0994
Synpcc7942_0995: ycf20 - conserved hypothetical protein YCF20, at 1,003,809 to 1,004,204
ycf20
Synpcc7942_0996: Synpcc7942_0996 - glycerate kinase, at 1,004,254 to 1,005,240
_0996
Position (kb)
1003
1004 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3
4 at 1002.664 kb on + strand, within Synpcc7942_0993 at 1002.814 kb on - strand, within Synpcc7942_0993 at 1002.944 kb on - strand, within Synpcc7942_0993 at 1003.113 kb on + strand at 1003.301 kb on - strand, within Synpcc7942_0994 at 1003.320 kb on + strand, within Synpcc7942_0994 at 1003.340 kb on + strand, within Synpcc7942_0994 at 1003.348 kb on - strand, within Synpcc7942_0994 at 1003.364 kb on + strand, within Synpcc7942_0994 at 1003.364 kb on + strand, within Synpcc7942_0994 at 1003.383 kb on - strand, within Synpcc7942_0994 at 1003.383 kb on - strand, within Synpcc7942_0994 at 1003.397 kb on - strand, within Synpcc7942_0994 at 1003.423 kb on + strand, within Synpcc7942_0994 at 1003.472 kb on - strand, within Synpcc7942_0994 at 1003.499 kb on + strand, within Synpcc7942_0994 at 1003.546 kb on + strand, within Synpcc7942_0994 at 1003.551 kb on + strand, within Synpcc7942_0994 at 1003.551 kb on + strand, within Synpcc7942_0994 at 1003.554 kb on - strand, within Synpcc7942_0994 at 1003.564 kb on - strand, within Synpcc7942_0994 at 1003.639 kb on + strand, within Synpcc7942_0994 at 1003.658 kb on + strand, within Synpcc7942_0994 at 1003.677 kb on + strand, within Synpcc7942_0994 at 1003.685 kb on - strand, within Synpcc7942_0994 at 1003.731 kb on + strand at 1003.731 kb on + strand at 1003.773 kb on - strand at 1003.778 kb on + strand at 1003.778 kb on + strand at 1003.778 kb on + strand at 1003.778 kb on + strand at 1003.778 kb on + strand at 1003.778 kb on + strand at 1003.779 kb on - strand at 1003.779 kb on - strand at 1003.781 kb on + strand at 1003.786 kb on - strand at 1003.789 kb on - strand at 1003.791 kb on + strand at 1003.792 kb on + strand at 1003.794 kb on + strand at 1003.800 kb on - strand at 1003.862 kb on - strand, within ycf20 at 1004.226 kb on + strand at 1004.236 kb on + strand at 1004.236 kb on + strand at 1004.236 kb on + strand at 1004.236 kb on + strand at 1004.236 kb on + strand at 1004.244 kb on - strand at 1004.256 kb on - strand at 1004.261 kb on - strand at 1004.264 kb on - strand at 1004.270 kb on + strand at 1004.280 kb on - strand at 1004.284 kb on + strand at 1004.285 kb on - strand at 1004.311 kb on + strand at 1004.343 kb on - strand at 1004.345 kb on + strand at 1004.345 kb on + strand at 1004.363 kb on - strand, within Synpcc7942_0996 at 1004.372 kb on - strand, within Synpcc7942_0996 at 1004.417 kb on + strand, within Synpcc7942_0996 at 1004.430 kb on + strand, within Synpcc7942_0996 at 1004.447 kb on - strand, within Synpcc7942_0996 at 1004.464 kb on + strand, within Synpcc7942_0996 at 1004.464 kb on + strand, within Synpcc7942_0996 at 1004.477 kb on - strand, within Synpcc7942_0996 at 1004.482 kb on - strand, within Synpcc7942_0996 at 1004.501 kb on - strand, within Synpcc7942_0996 at 1004.512 kb on - strand, within Synpcc7942_0996 at 1004.512 kb on - strand, within Synpcc7942_0996 at 1004.559 kb on + strand at 1004.560 kb on + strand, within Synpcc7942_0996 at 1004.567 kb on - strand, within Synpcc7942_0996 at 1004.568 kb on - strand, within Synpcc7942_0996 at 1004.568 kb on - strand, within Synpcc7942_0996 at 1004.586 kb on + strand, within Synpcc7942_0996 at 1004.586 kb on + strand, within Synpcc7942_0996 at 1004.586 kb on + strand, within Synpcc7942_0996 at 1004.589 kb on - strand, within Synpcc7942_0996 at 1004.596 kb on - strand, within Synpcc7942_0996 at 1004.615 kb on + strand, within Synpcc7942_0996 at 1004.663 kb on + strand, within Synpcc7942_0996 at 1004.663 kb on + strand, within Synpcc7942_0996 at 1004.710 kb on + strand, within Synpcc7942_0996 at 1004.718 kb on - strand, within Synpcc7942_0996 at 1004.732 kb on + strand, within Synpcc7942_0996 at 1004.744 kb on - strand, within Synpcc7942_0996
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 1,002,664 + Synpcc7942_0993 0.65 -1.9 1,002,814 - Synpcc7942_0993 0.76 -0.5 1,002,944 - Synpcc7942_0993 0.85 -0.8 1,003,113 + -1.4 1,003,301 - Synpcc7942_0994 0.22 -3.2 1,003,320 + Synpcc7942_0994 0.25 -0.9 1,003,340 + Synpcc7942_0994 0.29 -1.5 1,003,348 - Synpcc7942_0994 0.30 -2.4 1,003,364 + Synpcc7942_0994 0.33 -1.6 1,003,364 + Synpcc7942_0994 0.33 -1.8 1,003,383 - Synpcc7942_0994 0.36 -1.4 1,003,383 - Synpcc7942_0994 0.36 -6.4 1,003,397 - Synpcc7942_0994 0.39 -2.1 1,003,423 + Synpcc7942_0994 0.43 +2.2 1,003,472 - Synpcc7942_0994 0.52 -1.5 1,003,499 + Synpcc7942_0994 0.56 +1.1 1,003,546 + Synpcc7942_0994 0.65 -3.5 1,003,551 + Synpcc7942_0994 0.66 -5.5 1,003,551 + Synpcc7942_0994 0.66 -3.1 1,003,554 - Synpcc7942_0994 0.66 -5.3 1,003,564 - Synpcc7942_0994 0.68 +0.8 1,003,639 + Synpcc7942_0994 0.81 -2.9 1,003,658 + Synpcc7942_0994 0.84 -1.5 1,003,677 + Synpcc7942_0994 0.88 -2.9 1,003,685 - Synpcc7942_0994 0.89 -2.5 1,003,731 + -3.1 1,003,731 + -1.5 1,003,773 - -0.4 1,003,778 + +3.0 1,003,778 + +0.7 1,003,778 + +2.5 1,003,778 + +1.5 1,003,778 + +1.3 1,003,778 + -1.7 1,003,779 - -0.3 1,003,779 - -0.1 1,003,781 + -0.6 1,003,786 - +1.1 1,003,789 - -0.9 1,003,791 + +2.2 1,003,792 + +3.1 1,003,794 + +0.5 1,003,800 - -1.3 1,003,862 - ycf20 Synpcc7942_0995 0.13 +2.1 1,004,226 + -3.3 1,004,236 + -2.5 1,004,236 + -0.9 1,004,236 + -2.6 1,004,236 + -0.8 1,004,236 + +1.6 1,004,244 - -1.1 1,004,256 - -1.0 1,004,261 - -2.2 1,004,264 - +0.8 1,004,270 + +1.1 1,004,280 - +1.5 1,004,284 + -1.3 1,004,285 - -1.8 1,004,311 + +0.4 1,004,343 - -0.9 1,004,345 + -2.0 1,004,345 + +2.6 1,004,363 - Synpcc7942_0996 0.11 +3.6 1,004,372 - Synpcc7942_0996 0.12 +2.5 1,004,417 + Synpcc7942_0996 0.17 -0.4 1,004,430 + Synpcc7942_0996 0.18 +0.6 1,004,447 - Synpcc7942_0996 0.20 -2.3 1,004,464 + Synpcc7942_0996 0.21 +1.2 1,004,464 + Synpcc7942_0996 0.21 -2.1 1,004,477 - Synpcc7942_0996 0.23 -0.6 1,004,482 - Synpcc7942_0996 0.23 +1.1 1,004,501 - Synpcc7942_0996 0.25 +4.1 1,004,512 - Synpcc7942_0996 0.26 -1.3 1,004,512 - Synpcc7942_0996 0.26 +0.2 1,004,559 + +0.5 1,004,560 + Synpcc7942_0996 0.31 -1.8 1,004,567 - Synpcc7942_0996 0.32 +0.3 1,004,568 - Synpcc7942_0996 0.32 -1.2 1,004,568 - Synpcc7942_0996 0.32 -1.4 1,004,586 + Synpcc7942_0996 0.34 -1.1 1,004,586 + Synpcc7942_0996 0.34 -1.8 1,004,586 + Synpcc7942_0996 0.34 +1.0 1,004,589 - Synpcc7942_0996 0.34 +1.6 1,004,596 - Synpcc7942_0996 0.35 -1.5 1,004,615 + Synpcc7942_0996 0.37 +1.7 1,004,663 + Synpcc7942_0996 0.41 -2.1 1,004,663 + Synpcc7942_0996 0.41 -1.1 1,004,710 + Synpcc7942_0996 0.46 -1.9 1,004,718 - Synpcc7942_0996 0.47 -0.9 1,004,732 + Synpcc7942_0996 0.48 +2.1 1,004,744 - Synpcc7942_0996 0.50 -1.1
Or see this region's nucleotide sequence