Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0994

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0993 and Synpcc7942_0994 are separated by 31 nucleotidesSynpcc7942_0994 and ycf20 are separated by 62 nucleotidesycf20 and Synpcc7942_0996 are separated by 49 nucleotides Synpcc7942_0993: Synpcc7942_0993 - hypothetical protein, at 1,001,766 to 1,003,145 _0993 Synpcc7942_0994: Synpcc7942_0994 - hypothetical protein, at 1,003,177 to 1,003,746 _0994 Synpcc7942_0995: ycf20 - conserved hypothetical protein YCF20, at 1,003,809 to 1,004,204 ycf20 Synpcc7942_0996: Synpcc7942_0996 - glycerate kinase, at 1,004,254 to 1,005,240 _0996 Position (kb) 1003 1004Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 1002.664 kb on + strand, within Synpcc7942_0993at 1002.814 kb on - strand, within Synpcc7942_0993at 1002.944 kb on - strand, within Synpcc7942_0993at 1003.113 kb on + strandat 1003.301 kb on - strand, within Synpcc7942_0994at 1003.320 kb on + strand, within Synpcc7942_0994at 1003.340 kb on + strand, within Synpcc7942_0994at 1003.348 kb on - strand, within Synpcc7942_0994at 1003.364 kb on + strand, within Synpcc7942_0994at 1003.364 kb on + strand, within Synpcc7942_0994at 1003.383 kb on - strand, within Synpcc7942_0994at 1003.383 kb on - strand, within Synpcc7942_0994at 1003.397 kb on - strand, within Synpcc7942_0994at 1003.423 kb on + strand, within Synpcc7942_0994at 1003.472 kb on - strand, within Synpcc7942_0994at 1003.499 kb on + strand, within Synpcc7942_0994at 1003.546 kb on + strand, within Synpcc7942_0994at 1003.551 kb on + strand, within Synpcc7942_0994at 1003.551 kb on + strand, within Synpcc7942_0994at 1003.554 kb on - strand, within Synpcc7942_0994at 1003.564 kb on - strand, within Synpcc7942_0994at 1003.639 kb on + strand, within Synpcc7942_0994at 1003.658 kb on + strand, within Synpcc7942_0994at 1003.677 kb on + strand, within Synpcc7942_0994at 1003.685 kb on - strand, within Synpcc7942_0994at 1003.731 kb on + strandat 1003.731 kb on + strandat 1003.773 kb on - strandat 1003.778 kb on + strandat 1003.778 kb on + strandat 1003.778 kb on + strandat 1003.778 kb on + strandat 1003.778 kb on + strandat 1003.778 kb on + strandat 1003.779 kb on - strandat 1003.779 kb on - strandat 1003.781 kb on + strandat 1003.786 kb on - strandat 1003.789 kb on - strandat 1003.791 kb on + strandat 1003.792 kb on + strandat 1003.794 kb on + strandat 1003.800 kb on - strandat 1003.862 kb on - strand, within ycf20at 1004.226 kb on + strandat 1004.236 kb on + strandat 1004.236 kb on + strandat 1004.236 kb on + strandat 1004.236 kb on + strandat 1004.236 kb on + strandat 1004.244 kb on - strandat 1004.256 kb on - strandat 1004.261 kb on - strandat 1004.264 kb on - strandat 1004.270 kb on + strandat 1004.280 kb on - strandat 1004.284 kb on + strandat 1004.285 kb on - strandat 1004.311 kb on + strandat 1004.343 kb on - strandat 1004.345 kb on + strandat 1004.345 kb on + strandat 1004.363 kb on - strand, within Synpcc7942_0996at 1004.372 kb on - strand, within Synpcc7942_0996at 1004.417 kb on + strand, within Synpcc7942_0996at 1004.430 kb on + strand, within Synpcc7942_0996at 1004.447 kb on - strand, within Synpcc7942_0996at 1004.464 kb on + strand, within Synpcc7942_0996at 1004.464 kb on + strand, within Synpcc7942_0996at 1004.477 kb on - strand, within Synpcc7942_0996at 1004.482 kb on - strand, within Synpcc7942_0996at 1004.501 kb on - strand, within Synpcc7942_0996at 1004.512 kb on - strand, within Synpcc7942_0996at 1004.512 kb on - strand, within Synpcc7942_0996at 1004.559 kb on + strandat 1004.560 kb on + strand, within Synpcc7942_0996at 1004.567 kb on - strand, within Synpcc7942_0996at 1004.568 kb on - strand, within Synpcc7942_0996at 1004.568 kb on - strand, within Synpcc7942_0996at 1004.586 kb on + strand, within Synpcc7942_0996at 1004.586 kb on + strand, within Synpcc7942_0996at 1004.586 kb on + strand, within Synpcc7942_0996at 1004.589 kb on - strand, within Synpcc7942_0996at 1004.596 kb on - strand, within Synpcc7942_0996at 1004.615 kb on + strand, within Synpcc7942_0996at 1004.663 kb on + strand, within Synpcc7942_0996at 1004.663 kb on + strand, within Synpcc7942_0996at 1004.710 kb on + strand, within Synpcc7942_0996at 1004.718 kb on - strand, within Synpcc7942_0996at 1004.732 kb on + strand, within Synpcc7942_0996at 1004.744 kb on - strand, within Synpcc7942_0996

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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1,002,664 + Synpcc7942_0993 0.65 -1.9
1,002,814 - Synpcc7942_0993 0.76 -0.5
1,002,944 - Synpcc7942_0993 0.85 -0.8
1,003,113 + -1.4
1,003,301 - Synpcc7942_0994 0.22 -3.2
1,003,320 + Synpcc7942_0994 0.25 -0.9
1,003,340 + Synpcc7942_0994 0.29 -1.5
1,003,348 - Synpcc7942_0994 0.30 -2.4
1,003,364 + Synpcc7942_0994 0.33 -1.6
1,003,364 + Synpcc7942_0994 0.33 -1.8
1,003,383 - Synpcc7942_0994 0.36 -1.4
1,003,383 - Synpcc7942_0994 0.36 -6.4
1,003,397 - Synpcc7942_0994 0.39 -2.1
1,003,423 + Synpcc7942_0994 0.43 +2.2
1,003,472 - Synpcc7942_0994 0.52 -1.5
1,003,499 + Synpcc7942_0994 0.56 +1.1
1,003,546 + Synpcc7942_0994 0.65 -3.5
1,003,551 + Synpcc7942_0994 0.66 -5.5
1,003,551 + Synpcc7942_0994 0.66 -3.1
1,003,554 - Synpcc7942_0994 0.66 -5.3
1,003,564 - Synpcc7942_0994 0.68 +0.8
1,003,639 + Synpcc7942_0994 0.81 -2.9
1,003,658 + Synpcc7942_0994 0.84 -1.5
1,003,677 + Synpcc7942_0994 0.88 -2.9
1,003,685 - Synpcc7942_0994 0.89 -2.5
1,003,731 + -3.1
1,003,731 + -1.5
1,003,773 - -0.4
1,003,778 + +3.0
1,003,778 + +0.7
1,003,778 + +2.5
1,003,778 + +1.5
1,003,778 + +1.3
1,003,778 + -1.7
1,003,779 - -0.3
1,003,779 - -0.1
1,003,781 + -0.6
1,003,786 - +1.1
1,003,789 - -0.9
1,003,791 + +2.2
1,003,792 + +3.1
1,003,794 + +0.5
1,003,800 - -1.3
1,003,862 - ycf20 Synpcc7942_0995 0.13 +2.1
1,004,226 + -3.3
1,004,236 + -2.5
1,004,236 + -0.9
1,004,236 + -2.6
1,004,236 + -0.8
1,004,236 + +1.6
1,004,244 - -1.1
1,004,256 - -1.0
1,004,261 - -2.2
1,004,264 - +0.8
1,004,270 + +1.1
1,004,280 - +1.5
1,004,284 + -1.3
1,004,285 - -1.8
1,004,311 + +0.4
1,004,343 - -0.9
1,004,345 + -2.0
1,004,345 + +2.6
1,004,363 - Synpcc7942_0996 0.11 +3.6
1,004,372 - Synpcc7942_0996 0.12 +2.5
1,004,417 + Synpcc7942_0996 0.17 -0.4
1,004,430 + Synpcc7942_0996 0.18 +0.6
1,004,447 - Synpcc7942_0996 0.20 -2.3
1,004,464 + Synpcc7942_0996 0.21 +1.2
1,004,464 + Synpcc7942_0996 0.21 -2.1
1,004,477 - Synpcc7942_0996 0.23 -0.6
1,004,482 - Synpcc7942_0996 0.23 +1.1
1,004,501 - Synpcc7942_0996 0.25 +4.1
1,004,512 - Synpcc7942_0996 0.26 -1.3
1,004,512 - Synpcc7942_0996 0.26 +0.2
1,004,559 + +0.5
1,004,560 + Synpcc7942_0996 0.31 -1.8
1,004,567 - Synpcc7942_0996 0.32 +0.3
1,004,568 - Synpcc7942_0996 0.32 -1.2
1,004,568 - Synpcc7942_0996 0.32 -1.4
1,004,586 + Synpcc7942_0996 0.34 -1.1
1,004,586 + Synpcc7942_0996 0.34 -1.8
1,004,586 + Synpcc7942_0996 0.34 +1.0
1,004,589 - Synpcc7942_0996 0.34 +1.6
1,004,596 - Synpcc7942_0996 0.35 -1.5
1,004,615 + Synpcc7942_0996 0.37 +1.7
1,004,663 + Synpcc7942_0996 0.41 -2.1
1,004,663 + Synpcc7942_0996 0.41 -1.1
1,004,710 + Synpcc7942_0996 0.46 -1.9
1,004,718 - Synpcc7942_0996 0.47 -0.9
1,004,732 + Synpcc7942_0996 0.48 +2.1
1,004,744 - Synpcc7942_0996 0.50 -1.1

Or see this region's nucleotide sequence