Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0938

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0936 and Synpcc7942_0937 are separated by 46 nucleotidesSynpcc7942_0937 and Synpcc7942_0938 are separated by 92 nucleotidesSynpcc7942_0938 and cysC are separated by 77 nucleotidescysC and Synpcc7942_0940 are separated by 44 nucleotides Synpcc7942_0936: Synpcc7942_0936 - Rhodanese-like, at 942,843 to 943,388 _0936 Synpcc7942_0937: Synpcc7942_0937 - hypothetical protein, at 943,435 to 944,127 _0937 Synpcc7942_0938: Synpcc7942_0938 - transcriptional regulator, ArsR family, at 944,220 to 944,540 _0938 Synpcc7942_0939: cysC - adenylylsulfate kinase, at 944,618 to 945,244 cysC Synpcc7942_0940: Synpcc7942_0940 - transcriptional regulator, XRE family, at 945,289 to 945,639 _0940 Position (kb) 944 945Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 943.249 kb on + strand, within Synpcc7942_0936at 943.260 kb on - strand, within Synpcc7942_0936at 943.261 kb on + strand, within Synpcc7942_0936at 943.261 kb on + strand, within Synpcc7942_0936at 943.269 kb on - strand, within Synpcc7942_0936at 943.315 kb on + strand, within Synpcc7942_0936at 943.315 kb on + strand, within Synpcc7942_0936at 943.339 kb on - strandat 943.339 kb on - strandat 943.339 kb on - strandat 943.339 kb on - strandat 943.349 kb on - strandat 943.349 kb on - strandat 943.353 kb on + strandat 943.404 kb on - strandat 943.414 kb on - strandat 943.424 kb on + strandat 943.440 kb on - strandat 943.440 kb on - strandat 943.514 kb on - strand, within Synpcc7942_0937at 943.514 kb on - strand, within Synpcc7942_0937at 943.514 kb on - strand, within Synpcc7942_0937at 943.516 kb on + strand, within Synpcc7942_0937at 943.524 kb on - strand, within Synpcc7942_0937at 943.542 kb on - strand, within Synpcc7942_0937at 943.597 kb on + strand, within Synpcc7942_0937at 943.607 kb on + strand, within Synpcc7942_0937at 943.615 kb on - strand, within Synpcc7942_0937at 943.615 kb on - strand, within Synpcc7942_0937at 943.633 kb on + strand, within Synpcc7942_0937at 943.657 kb on + strand, within Synpcc7942_0937at 943.675 kb on + strand, within Synpcc7942_0937at 943.809 kb on + strand, within Synpcc7942_0937at 943.823 kb on + strand, within Synpcc7942_0937at 943.837 kb on - strand, within Synpcc7942_0937at 943.846 kb on - strand, within Synpcc7942_0937at 943.860 kb on + strand, within Synpcc7942_0937at 943.893 kb on + strand, within Synpcc7942_0937at 943.939 kb on + strand, within Synpcc7942_0937at 943.947 kb on - strand, within Synpcc7942_0937at 943.947 kb on - strand, within Synpcc7942_0937at 943.952 kb on - strand, within Synpcc7942_0937at 943.957 kb on - strand, within Synpcc7942_0937at 943.959 kb on - strand, within Synpcc7942_0937at 943.986 kb on + strand, within Synpcc7942_0937at 943.995 kb on - strand, within Synpcc7942_0937at 944.002 kb on - strand, within Synpcc7942_0937at 944.004 kb on + strand, within Synpcc7942_0937at 944.004 kb on + strand, within Synpcc7942_0937at 944.025 kb on + strand, within Synpcc7942_0937at 944.025 kb on + strand, within Synpcc7942_0937at 944.084 kb on + strandat 944.092 kb on - strandat 944.216 kb on + strandat 944.227 kb on + strandat 944.232 kb on + strandat 944.254 kb on + strand, within Synpcc7942_0938at 944.262 kb on - strand, within Synpcc7942_0938at 944.289 kb on + strand, within Synpcc7942_0938at 944.291 kb on + strand, within Synpcc7942_0938at 944.299 kb on - strand, within Synpcc7942_0938at 944.307 kb on - strand, within Synpcc7942_0938at 944.311 kb on - strand, within Synpcc7942_0938at 944.346 kb on + strand, within Synpcc7942_0938at 944.354 kb on - strand, within Synpcc7942_0938at 944.354 kb on - strand, within Synpcc7942_0938at 944.357 kb on + strand, within Synpcc7942_0938at 944.357 kb on + strand, within Synpcc7942_0938at 944.365 kb on - strand, within Synpcc7942_0938at 944.365 kb on - strand, within Synpcc7942_0938at 944.365 kb on - strand, within Synpcc7942_0938at 944.373 kb on - strand, within Synpcc7942_0938at 944.374 kb on + strand, within Synpcc7942_0938at 944.382 kb on + strand, within Synpcc7942_0938at 944.383 kb on - strand, within Synpcc7942_0938at 944.423 kb on - strand, within Synpcc7942_0938at 944.433 kb on - strand, within Synpcc7942_0938at 944.457 kb on + strand, within Synpcc7942_0938at 944.466 kb on - strand, within Synpcc7942_0938at 944.466 kb on - strand, within Synpcc7942_0938at 944.468 kb on + strand, within Synpcc7942_0938at 944.480 kb on - strand, within Synpcc7942_0938at 944.511 kb on + strandat 944.546 kb on + strandat 944.561 kb on - strandat 944.581 kb on + strandat 944.581 kb on + strandat 944.581 kb on + strandat 944.591 kb on + strandat 944.593 kb on - strandat 945.191 kb on + strandat 945.199 kb on + strandat 945.199 kb on + strandat 945.201 kb on + strandat 945.270 kb on - strandat 945.285 kb on - strandat 945.285 kb on - strandat 945.290 kb on - strandat 945.323 kb on + strandat 945.323 kb on + strandat 945.340 kb on + strand, within Synpcc7942_0940at 945.343 kb on + strand, within Synpcc7942_0940at 945.358 kb on + strand, within Synpcc7942_0940at 945.365 kb on + strand, within Synpcc7942_0940at 945.377 kb on + strand, within Synpcc7942_0940at 945.385 kb on - strand, within Synpcc7942_0940at 945.390 kb on - strand, within Synpcc7942_0940at 945.512 kb on + strand, within Synpcc7942_0940

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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943,249 + Synpcc7942_0936 0.74 -0.6
943,260 - Synpcc7942_0936 0.76 +3.1
943,261 + Synpcc7942_0936 0.77 +1.7
943,261 + Synpcc7942_0936 0.77 +1.4
943,269 - Synpcc7942_0936 0.78 +0.8
943,315 + Synpcc7942_0936 0.86 +2.4
943,315 + Synpcc7942_0936 0.86 +2.5
943,339 - +1.7
943,339 - -0.1
943,339 - -1.4
943,339 - +0.7
943,349 - -1.4
943,349 - +1.2
943,353 + +1.2
943,404 - +1.2
943,414 - +2.5
943,424 + -2.2
943,440 - -0.4
943,440 - +4.3
943,514 - Synpcc7942_0937 0.11 -0.6
943,514 - Synpcc7942_0937 0.11 -0.6
943,514 - Synpcc7942_0937 0.11 -1.5
943,516 + Synpcc7942_0937 0.12 -0.4
943,524 - Synpcc7942_0937 0.13 +0.6
943,542 - Synpcc7942_0937 0.15 -1.1
943,597 + Synpcc7942_0937 0.23 +1.0
943,607 + Synpcc7942_0937 0.25 -3.1
943,615 - Synpcc7942_0937 0.26 -0.2
943,615 - Synpcc7942_0937 0.26 +2.3
943,633 + Synpcc7942_0937 0.29 +0.3
943,657 + Synpcc7942_0937 0.32 +1.8
943,675 + Synpcc7942_0937 0.35 +1.5
943,809 + Synpcc7942_0937 0.54 -2.6
943,823 + Synpcc7942_0937 0.56 +1.3
943,837 - Synpcc7942_0937 0.58 +1.0
943,846 - Synpcc7942_0937 0.59 -2.4
943,860 + Synpcc7942_0937 0.61 +1.2
943,893 + Synpcc7942_0937 0.66 +2.0
943,939 + Synpcc7942_0937 0.73 +2.6
943,947 - Synpcc7942_0937 0.74 -2.7
943,947 - Synpcc7942_0937 0.74 +0.3
943,952 - Synpcc7942_0937 0.75 +0.9
943,957 - Synpcc7942_0937 0.75 -0.1
943,959 - Synpcc7942_0937 0.76 -1.1
943,986 + Synpcc7942_0937 0.80 +0.6
943,995 - Synpcc7942_0937 0.81 -0.3
944,002 - Synpcc7942_0937 0.82 -0.4
944,004 + Synpcc7942_0937 0.82 -1.1
944,004 + Synpcc7942_0937 0.82 +0.6
944,025 + Synpcc7942_0937 0.85 +2.1
944,025 + Synpcc7942_0937 0.85 +0.9
944,084 + -0.8
944,092 - +1.1
944,216 + -1.3
944,227 + -1.1
944,232 + +1.9
944,254 + Synpcc7942_0938 0.11 -2.9
944,262 - Synpcc7942_0938 0.13 -1.0
944,289 + Synpcc7942_0938 0.21 -4.2
944,291 + Synpcc7942_0938 0.22 -3.4
944,299 - Synpcc7942_0938 0.25 -4.7
944,307 - Synpcc7942_0938 0.27 -1.0
944,311 - Synpcc7942_0938 0.28 -3.7
944,346 + Synpcc7942_0938 0.39 -2.4
944,354 - Synpcc7942_0938 0.42 -1.1
944,354 - Synpcc7942_0938 0.42 -2.0
944,357 + Synpcc7942_0938 0.43 -4.5
944,357 + Synpcc7942_0938 0.43 -2.6
944,365 - Synpcc7942_0938 0.45 -3.1
944,365 - Synpcc7942_0938 0.45 -3.3
944,365 - Synpcc7942_0938 0.45 -2.6
944,373 - Synpcc7942_0938 0.48 -2.7
944,374 + Synpcc7942_0938 0.48 -3.0
944,382 + Synpcc7942_0938 0.50 -4.0
944,383 - Synpcc7942_0938 0.51 -2.4
944,423 - Synpcc7942_0938 0.63 -3.8
944,433 - Synpcc7942_0938 0.66 -2.0
944,457 + Synpcc7942_0938 0.74 -4.6
944,466 - Synpcc7942_0938 0.77 -0.6
944,466 - Synpcc7942_0938 0.77 -1.6
944,468 + Synpcc7942_0938 0.77 -2.2
944,480 - Synpcc7942_0938 0.81 -1.4
944,511 + -0.8
944,546 + +0.1
944,561 - +0.1
944,581 + -1.7
944,581 + +0.2
944,581 + -2.6
944,591 + -0.1
944,593 - -1.0
945,191 + -0.6
945,199 + -1.8
945,199 + +2.1
945,201 + -1.7
945,270 - -0.5
945,285 - +0.8
945,285 - +0.9
945,290 - -3.9
945,323 + -2.3
945,323 + -1.7
945,340 + Synpcc7942_0940 0.15 -1.8
945,343 + Synpcc7942_0940 0.15 -1.0
945,358 + Synpcc7942_0940 0.20 +3.2
945,365 + Synpcc7942_0940 0.22 -1.7
945,377 + Synpcc7942_0940 0.25 -1.2
945,385 - Synpcc7942_0940 0.27 -1.5
945,390 - Synpcc7942_0940 0.29 -2.0
945,512 + Synpcc7942_0940 0.64 -3.4

Or see this region's nucleotide sequence