Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0936

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0934 and Synpcc7942_0935 are separated by 11 nucleotidesSynpcc7942_0935 and Synpcc7942_0936 are separated by 4 nucleotidesSynpcc7942_0936 and Synpcc7942_0937 are separated by 46 nucleotidesSynpcc7942_0937 and Synpcc7942_0938 are separated by 92 nucleotides Synpcc7942_0934: Synpcc7942_0934 - hypothetical protein, at 940,995 to 942,056 _0934 Synpcc7942_0935: Synpcc7942_0935 - hypothetical protein, at 942,068 to 942,838 _0935 Synpcc7942_0936: Synpcc7942_0936 - Rhodanese-like, at 942,843 to 943,388 _0936 Synpcc7942_0937: Synpcc7942_0937 - hypothetical protein, at 943,435 to 944,127 _0937 Synpcc7942_0938: Synpcc7942_0938 - transcriptional regulator, ArsR family, at 944,220 to 944,540 _0938 Position (kb) 942 943 944Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 941.845 kb on - strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.847 kb on + strand, within Synpcc7942_0934at 941.894 kb on + strand, within Synpcc7942_0934at 941.912 kb on - strand, within Synpcc7942_0934at 941.946 kb on - strandat 941.957 kb on + strandat 941.965 kb on - strandat 942.024 kb on + strandat 942.058 kb on - strandat 942.058 kb on - strandat 942.095 kb on - strandat 942.097 kb on - strandat 942.112 kb on + strandat 942.130 kb on + strandat 942.140 kb on - strandat 942.144 kb on + strandat 942.155 kb on + strand, within Synpcc7942_0935at 942.170 kb on + strand, within Synpcc7942_0935at 942.171 kb on + strand, within Synpcc7942_0935at 942.178 kb on - strand, within Synpcc7942_0935at 942.179 kb on - strand, within Synpcc7942_0935at 942.188 kb on - strand, within Synpcc7942_0935at 942.191 kb on + strand, within Synpcc7942_0935at 942.199 kb on + strand, within Synpcc7942_0935at 942.199 kb on - strand, within Synpcc7942_0935at 942.214 kb on - strand, within Synpcc7942_0935at 942.219 kb on + strand, within Synpcc7942_0935at 942.219 kb on + strand, within Synpcc7942_0935at 942.227 kb on - strand, within Synpcc7942_0935at 942.227 kb on - strand, within Synpcc7942_0935at 942.229 kb on + strand, within Synpcc7942_0935at 942.229 kb on + strand, within Synpcc7942_0935at 942.229 kb on + strand, within Synpcc7942_0935at 942.248 kb on - strand, within Synpcc7942_0935at 942.259 kb on - strandat 942.283 kb on + strand, within Synpcc7942_0935at 942.286 kb on + strand, within Synpcc7942_0935at 942.319 kb on - strand, within Synpcc7942_0935at 942.329 kb on - strand, within Synpcc7942_0935at 942.361 kb on + strand, within Synpcc7942_0935at 942.366 kb on + strand, within Synpcc7942_0935at 942.379 kb on - strand, within Synpcc7942_0935at 942.388 kb on + strand, within Synpcc7942_0935at 942.394 kb on + strand, within Synpcc7942_0935at 942.410 kb on + strand, within Synpcc7942_0935at 942.460 kb on - strand, within Synpcc7942_0935at 942.460 kb on - strand, within Synpcc7942_0935at 942.493 kb on + strand, within Synpcc7942_0935at 942.494 kb on - strand, within Synpcc7942_0935at 942.501 kb on - strand, within Synpcc7942_0935at 942.501 kb on - strand, within Synpcc7942_0935at 942.560 kb on + strand, within Synpcc7942_0935at 942.576 kb on - strand, within Synpcc7942_0935at 942.590 kb on + strand, within Synpcc7942_0935at 942.590 kb on - strand, within Synpcc7942_0935at 942.599 kb on - strand, within Synpcc7942_0935at 942.614 kb on + strand, within Synpcc7942_0935at 942.619 kb on + strand, within Synpcc7942_0935at 942.619 kb on - strand, within Synpcc7942_0935at 942.624 kb on + strand, within Synpcc7942_0935at 942.624 kb on + strand, within Synpcc7942_0935at 942.624 kb on + strandat 942.632 kb on - strand, within Synpcc7942_0935at 942.632 kb on - strand, within Synpcc7942_0935at 942.632 kb on - strand, within Synpcc7942_0935at 942.647 kb on - strand, within Synpcc7942_0935at 942.661 kb on + strand, within Synpcc7942_0935at 942.679 kb on - strand, within Synpcc7942_0935at 942.694 kb on + strand, within Synpcc7942_0935at 942.694 kb on + strand, within Synpcc7942_0935at 942.739 kb on + strand, within Synpcc7942_0935at 942.766 kb on - strandat 942.787 kb on + strandat 942.801 kb on - strandat 942.814 kb on - strandat 942.828 kb on + strandat 942.831 kb on - strandat 942.848 kb on - strandat 942.849 kb on - strandat 942.895 kb on + strandat 942.912 kb on + strand, within Synpcc7942_0936at 942.912 kb on + strandat 942.912 kb on + strand, within Synpcc7942_0936at 942.917 kb on + strand, within Synpcc7942_0936at 942.920 kb on - strand, within Synpcc7942_0936at 942.929 kb on + strand, within Synpcc7942_0936at 942.941 kb on + strand, within Synpcc7942_0936at 942.947 kb on + strand, within Synpcc7942_0936at 942.958 kb on - strand, within Synpcc7942_0936at 942.971 kb on - strand, within Synpcc7942_0936at 942.974 kb on + strand, within Synpcc7942_0936at 942.984 kb on + strand, within Synpcc7942_0936at 942.992 kb on - strand, within Synpcc7942_0936at 943.004 kb on - strand, within Synpcc7942_0936at 943.005 kb on + strand, within Synpcc7942_0936at 943.027 kb on + strand, within Synpcc7942_0936at 943.046 kb on - strand, within Synpcc7942_0936at 943.076 kb on - strand, within Synpcc7942_0936at 943.085 kb on + strand, within Synpcc7942_0936at 943.093 kb on - strand, within Synpcc7942_0936at 943.103 kb on - strand, within Synpcc7942_0936at 943.104 kb on - strand, within Synpcc7942_0936at 943.104 kb on - strand, within Synpcc7942_0936at 943.216 kb on + strand, within Synpcc7942_0936at 943.249 kb on + strand, within Synpcc7942_0936at 943.260 kb on - strand, within Synpcc7942_0936at 943.261 kb on + strand, within Synpcc7942_0936at 943.261 kb on + strand, within Synpcc7942_0936at 943.269 kb on - strand, within Synpcc7942_0936at 943.315 kb on + strand, within Synpcc7942_0936at 943.315 kb on + strand, within Synpcc7942_0936at 943.339 kb on - strandat 943.339 kb on - strandat 943.339 kb on - strandat 943.339 kb on - strandat 943.349 kb on - strandat 943.349 kb on - strandat 943.353 kb on + strandat 943.404 kb on - strandat 943.414 kb on - strandat 943.424 kb on + strandat 943.440 kb on - strandat 943.440 kb on - strandat 943.514 kb on - strand, within Synpcc7942_0937at 943.514 kb on - strand, within Synpcc7942_0937at 943.514 kb on - strand, within Synpcc7942_0937at 943.516 kb on + strand, within Synpcc7942_0937at 943.524 kb on - strand, within Synpcc7942_0937at 943.542 kb on - strand, within Synpcc7942_0937at 943.597 kb on + strand, within Synpcc7942_0937at 943.607 kb on + strand, within Synpcc7942_0937at 943.615 kb on - strand, within Synpcc7942_0937at 943.615 kb on - strand, within Synpcc7942_0937at 943.633 kb on + strand, within Synpcc7942_0937at 943.657 kb on + strand, within Synpcc7942_0937at 943.675 kb on + strand, within Synpcc7942_0937at 943.809 kb on + strand, within Synpcc7942_0937at 943.823 kb on + strand, within Synpcc7942_0937at 943.837 kb on - strand, within Synpcc7942_0937at 943.846 kb on - strand, within Synpcc7942_0937at 943.860 kb on + strand, within Synpcc7942_0937at 943.893 kb on + strand, within Synpcc7942_0937at 943.939 kb on + strand, within Synpcc7942_0937at 943.947 kb on - strand, within Synpcc7942_0937at 943.947 kb on - strand, within Synpcc7942_0937at 943.952 kb on - strand, within Synpcc7942_0937at 943.957 kb on - strand, within Synpcc7942_0937at 943.959 kb on - strand, within Synpcc7942_0937at 943.986 kb on + strand, within Synpcc7942_0937at 943.995 kb on - strand, within Synpcc7942_0937at 944.002 kb on - strand, within Synpcc7942_0937at 944.004 kb on + strand, within Synpcc7942_0937at 944.004 kb on + strand, within Synpcc7942_0937at 944.025 kb on + strand, within Synpcc7942_0937at 944.025 kb on + strand, within Synpcc7942_0937at 944.084 kb on + strandat 944.092 kb on - strandat 944.216 kb on + strandat 944.227 kb on + strandat 944.232 kb on + strandat 944.254 kb on + strand, within Synpcc7942_0938at 944.262 kb on - strand, within Synpcc7942_0938at 944.289 kb on + strand, within Synpcc7942_0938at 944.291 kb on + strand, within Synpcc7942_0938at 944.299 kb on - strand, within Synpcc7942_0938at 944.307 kb on - strand, within Synpcc7942_0938at 944.311 kb on - strand, within Synpcc7942_0938at 944.346 kb on + strand, within Synpcc7942_0938at 944.354 kb on - strand, within Synpcc7942_0938at 944.354 kb on - strand, within Synpcc7942_0938at 944.357 kb on + strand, within Synpcc7942_0938at 944.357 kb on + strand, within Synpcc7942_0938at 944.365 kb on - strand, within Synpcc7942_0938at 944.365 kb on - strand, within Synpcc7942_0938at 944.365 kb on - strand, within Synpcc7942_0938at 944.373 kb on - strand, within Synpcc7942_0938at 944.374 kb on + strand, within Synpcc7942_0938at 944.382 kb on + strand, within Synpcc7942_0938at 944.383 kb on - strand, within Synpcc7942_0938

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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941,845 - Synpcc7942_0934 0.80 +6.0
941,847 + Synpcc7942_0934 0.80 +1.2
941,847 + Synpcc7942_0934 0.80 -0.5
941,847 + Synpcc7942_0934 0.80 -1.1
941,847 + Synpcc7942_0934 0.80 -2.2
941,847 + Synpcc7942_0934 0.80 -0.4
941,894 + Synpcc7942_0934 0.85 -1.4
941,912 - Synpcc7942_0934 0.86 +1.5
941,946 - -1.4
941,957 + -1.0
941,965 - -0.2
942,024 + +0.3
942,058 - -3.2
942,058 - -0.3
942,095 - -1.4
942,097 - +0.1
942,112 + +2.1
942,130 + +0.3
942,140 - +2.4
942,144 + -1.0
942,155 + Synpcc7942_0935 0.11 -2.4
942,170 + Synpcc7942_0935 0.13 +1.8
942,171 + Synpcc7942_0935 0.13 -1.8
942,178 - Synpcc7942_0935 0.14 +0.3
942,179 - Synpcc7942_0935 0.14 -1.4
942,188 - Synpcc7942_0935 0.16 +1.8
942,191 + Synpcc7942_0935 0.16 +0.2
942,199 + Synpcc7942_0935 0.17 -4.5
942,199 - Synpcc7942_0935 0.17 -0.1
942,214 - Synpcc7942_0935 0.19 -2.3
942,219 + Synpcc7942_0935 0.20 -3.2
942,219 + Synpcc7942_0935 0.20 +1.7
942,227 - Synpcc7942_0935 0.21 -1.9
942,227 - Synpcc7942_0935 0.21 +1.3
942,229 + Synpcc7942_0935 0.21 -2.7
942,229 + Synpcc7942_0935 0.21 +0.5
942,229 + Synpcc7942_0935 0.21 -1.8
942,248 - Synpcc7942_0935 0.23 -2.0
942,259 - -1.3
942,283 + Synpcc7942_0935 0.28 -0.1
942,286 + Synpcc7942_0935 0.28 -3.1
942,319 - Synpcc7942_0935 0.33 +3.6
942,329 - Synpcc7942_0935 0.34 +1.7
942,361 + Synpcc7942_0935 0.38 -0.8
942,366 + Synpcc7942_0935 0.39 -2.9
942,379 - Synpcc7942_0935 0.40 +1.0
942,388 + Synpcc7942_0935 0.42 -0.7
942,394 + Synpcc7942_0935 0.42 +1.7
942,410 + Synpcc7942_0935 0.44 +6.5
942,460 - Synpcc7942_0935 0.51 +0.0
942,460 - Synpcc7942_0935 0.51 -1.2
942,493 + Synpcc7942_0935 0.55 -1.8
942,494 - Synpcc7942_0935 0.55 -2.8
942,501 - Synpcc7942_0935 0.56 +0.6
942,501 - Synpcc7942_0935 0.56 +2.1
942,560 + Synpcc7942_0935 0.64 -1.2
942,576 - Synpcc7942_0935 0.66 -2.5
942,590 + Synpcc7942_0935 0.68 +1.8
942,590 - Synpcc7942_0935 0.68 -2.2
942,599 - Synpcc7942_0935 0.69 +2.4
942,614 + Synpcc7942_0935 0.71 -0.0
942,619 + Synpcc7942_0935 0.71 +2.5
942,619 - Synpcc7942_0935 0.71 +0.8
942,624 + Synpcc7942_0935 0.72 +0.3
942,624 + Synpcc7942_0935 0.72 -1.8
942,624 + +0.8
942,632 - Synpcc7942_0935 0.73 +1.4
942,632 - Synpcc7942_0935 0.73 -1.4
942,632 - Synpcc7942_0935 0.73 +1.5
942,647 - Synpcc7942_0935 0.75 -1.2
942,661 + Synpcc7942_0935 0.77 -2.4
942,679 - Synpcc7942_0935 0.79 -0.1
942,694 + Synpcc7942_0935 0.81 +0.8
942,694 + Synpcc7942_0935 0.81 -2.8
942,739 + Synpcc7942_0935 0.87 -0.7
942,766 - +0.6
942,787 + +0.7
942,801 - +1.6
942,814 - +1.5
942,828 + -0.3
942,831 - +2.8
942,848 - +1.7
942,849 - +1.0
942,895 + +1.8
942,912 + Synpcc7942_0936 0.13 +1.9
942,912 + +0.7
942,912 + Synpcc7942_0936 0.13 -3.7
942,917 + Synpcc7942_0936 0.14 +0.0
942,920 - Synpcc7942_0936 0.14 +0.7
942,929 + Synpcc7942_0936 0.16 -1.0
942,941 + Synpcc7942_0936 0.18 +1.8
942,947 + Synpcc7942_0936 0.19 +0.4
942,958 - Synpcc7942_0936 0.21 +2.9
942,971 - Synpcc7942_0936 0.23 +2.1
942,974 + Synpcc7942_0936 0.24 -0.7
942,984 + Synpcc7942_0936 0.26 -1.4
942,992 - Synpcc7942_0936 0.27 -0.6
943,004 - Synpcc7942_0936 0.29 +0.0
943,005 + Synpcc7942_0936 0.30 +0.4
943,027 + Synpcc7942_0936 0.34 +3.7
943,046 - Synpcc7942_0936 0.37 +0.7
943,076 - Synpcc7942_0936 0.43 +1.3
943,085 + Synpcc7942_0936 0.44 -0.6
943,093 - Synpcc7942_0936 0.46 -0.4
943,103 - Synpcc7942_0936 0.48 +0.8
943,104 - Synpcc7942_0936 0.48 +1.6
943,104 - Synpcc7942_0936 0.48 +6.5
943,216 + Synpcc7942_0936 0.68 +2.6
943,249 + Synpcc7942_0936 0.74 -0.6
943,260 - Synpcc7942_0936 0.76 +3.1
943,261 + Synpcc7942_0936 0.77 +1.7
943,261 + Synpcc7942_0936 0.77 +1.4
943,269 - Synpcc7942_0936 0.78 +0.8
943,315 + Synpcc7942_0936 0.86 +2.4
943,315 + Synpcc7942_0936 0.86 +2.5
943,339 - +1.7
943,339 - -0.1
943,339 - -1.4
943,339 - +0.7
943,349 - -1.4
943,349 - +1.2
943,353 + +1.2
943,404 - +1.2
943,414 - +2.5
943,424 + -2.2
943,440 - -0.4
943,440 - +4.3
943,514 - Synpcc7942_0937 0.11 -0.6
943,514 - Synpcc7942_0937 0.11 -0.6
943,514 - Synpcc7942_0937 0.11 -1.5
943,516 + Synpcc7942_0937 0.12 -0.4
943,524 - Synpcc7942_0937 0.13 +0.6
943,542 - Synpcc7942_0937 0.15 -1.1
943,597 + Synpcc7942_0937 0.23 +1.0
943,607 + Synpcc7942_0937 0.25 -3.1
943,615 - Synpcc7942_0937 0.26 -0.2
943,615 - Synpcc7942_0937 0.26 +2.3
943,633 + Synpcc7942_0937 0.29 +0.3
943,657 + Synpcc7942_0937 0.32 +1.8
943,675 + Synpcc7942_0937 0.35 +1.5
943,809 + Synpcc7942_0937 0.54 -2.6
943,823 + Synpcc7942_0937 0.56 +1.3
943,837 - Synpcc7942_0937 0.58 +1.0
943,846 - Synpcc7942_0937 0.59 -2.4
943,860 + Synpcc7942_0937 0.61 +1.2
943,893 + Synpcc7942_0937 0.66 +2.0
943,939 + Synpcc7942_0937 0.73 +2.6
943,947 - Synpcc7942_0937 0.74 -2.7
943,947 - Synpcc7942_0937 0.74 +0.3
943,952 - Synpcc7942_0937 0.75 +0.9
943,957 - Synpcc7942_0937 0.75 -0.1
943,959 - Synpcc7942_0937 0.76 -1.1
943,986 + Synpcc7942_0937 0.80 +0.6
943,995 - Synpcc7942_0937 0.81 -0.3
944,002 - Synpcc7942_0937 0.82 -0.4
944,004 + Synpcc7942_0937 0.82 -1.1
944,004 + Synpcc7942_0937 0.82 +0.6
944,025 + Synpcc7942_0937 0.85 +2.1
944,025 + Synpcc7942_0937 0.85 +0.9
944,084 + -0.8
944,092 - +1.1
944,216 + -1.3
944,227 + -1.1
944,232 + +1.9
944,254 + Synpcc7942_0938 0.11 -2.9
944,262 - Synpcc7942_0938 0.13 -1.0
944,289 + Synpcc7942_0938 0.21 -4.2
944,291 + Synpcc7942_0938 0.22 -3.4
944,299 - Synpcc7942_0938 0.25 -4.7
944,307 - Synpcc7942_0938 0.27 -1.0
944,311 - Synpcc7942_0938 0.28 -3.7
944,346 + Synpcc7942_0938 0.39 -2.4
944,354 - Synpcc7942_0938 0.42 -1.1
944,354 - Synpcc7942_0938 0.42 -2.0
944,357 + Synpcc7942_0938 0.43 -4.5
944,357 + Synpcc7942_0938 0.43 -2.6
944,365 - Synpcc7942_0938 0.45 -3.1
944,365 - Synpcc7942_0938 0.45 -3.3
944,365 - Synpcc7942_0938 0.45 -2.6
944,373 - Synpcc7942_0938 0.48 -2.7
944,374 + Synpcc7942_0938 0.48 -3.0
944,382 + Synpcc7942_0938 0.50 -4.0
944,383 - Synpcc7942_0938 0.51 -2.4

Or see this region's nucleotide sequence