Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pixJ1 and Synpcc7942_0859 are separated by 4 nucleotides Synpcc7942_0859 and Synpcc7942_0860 are separated by 10 nucleotides
Synpcc7942_0858: pixJ1 - methyl-accepting chemotaxis sensory transducer with phytochrome sensor, at 855,893 to 860,113
pixJ1
Synpcc7942_0859: Synpcc7942_0859 - CheA signal transduction histidine kinase, at 860,118 to 862,976
_0859
Synpcc7942_0860: Synpcc7942_0860 - CheW protein, at 862,987 to 863,946
_0860
Position (kb) 860
861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 859.200 kb on - strand, within pixJ1 at 859.428 kb on + strand, within pixJ1 at 859.684 kb on - strand, within pixJ1 at 859.742 kb on - strand at 859.742 kb on - strand at 859.839 kb on + strand at 859.847 kb on - strand at 859.852 kb on - strand at 859.910 kb on + strand at 859.912 kb on + strand at 859.953 kb on - strand at 860.039 kb on + strand at 860.039 kb on + strand at 860.047 kb on - strand at 860.088 kb on + strand at 860.088 kb on + strand at 860.211 kb on - strand at 860.211 kb on - strand at 860.246 kb on - strand at 860.272 kb on - strand at 860.273 kb on - strand at 860.288 kb on - strand at 860.291 kb on + strand at 860.293 kb on - strand at 860.303 kb on - strand at 860.332 kb on + strand at 860.332 kb on + strand at 860.332 kb on + strand at 860.333 kb on - strand at 860.348 kb on - strand at 860.360 kb on - strand at 860.395 kb on - strand at 860.408 kb on + strand, within Synpcc7942_0859 at 860.413 kb on - strand, within Synpcc7942_0859 at 860.444 kb on + strand, within Synpcc7942_0859 at 860.452 kb on - strand, within Synpcc7942_0859 at 860.452 kb on - strand, within Synpcc7942_0859 at 860.452 kb on - strand, within Synpcc7942_0859 at 860.467 kb on - strand, within Synpcc7942_0859 at 860.488 kb on - strand, within Synpcc7942_0859 at 860.504 kb on + strand, within Synpcc7942_0859 at 860.512 kb on - strand, within Synpcc7942_0859 at 860.513 kb on + strand, within Synpcc7942_0859 at 860.521 kb on - strand, within Synpcc7942_0859 at 860.522 kb on - strand, within Synpcc7942_0859 at 860.631 kb on + strand, within Synpcc7942_0859 at 860.640 kb on - strand, within Synpcc7942_0859 at 860.701 kb on + strand, within Synpcc7942_0859 at 860.701 kb on + strand, within Synpcc7942_0859 at 860.709 kb on - strand, within Synpcc7942_0859 at 860.719 kb on - strand, within Synpcc7942_0859 at 860.720 kb on - strand, within Synpcc7942_0859 at 860.769 kb on + strand, within Synpcc7942_0859 at 860.769 kb on + strand, within Synpcc7942_0859 at 860.840 kb on + strand, within Synpcc7942_0859 at 861.110 kb on + strand, within Synpcc7942_0859 at 861.133 kb on - strand, within Synpcc7942_0859 at 861.220 kb on - strand, within Synpcc7942_0859 at 861.289 kb on - strand, within Synpcc7942_0859 at 861.391 kb on - strand, within Synpcc7942_0859 at 861.474 kb on - strand, within Synpcc7942_0859 at 861.524 kb on + strand, within Synpcc7942_0859 at 861.666 kb on + strand, within Synpcc7942_0859 at 861.667 kb on + strand, within Synpcc7942_0859 at 861.720 kb on - strand, within Synpcc7942_0859 at 861.724 kb on + strand, within Synpcc7942_0859 at 861.733 kb on + strand, within Synpcc7942_0859 at 861.734 kb on + strand, within Synpcc7942_0859 at 861.741 kb on - strand, within Synpcc7942_0859 at 861.741 kb on - strand, within Synpcc7942_0859 at 861.783 kb on + strand, within Synpcc7942_0859 at 861.805 kb on + strand, within Synpcc7942_0859 at 861.813 kb on - strand, within Synpcc7942_0859 at 861.849 kb on - strand, within Synpcc7942_0859 at 861.898 kb on + strand, within Synpcc7942_0859 at 861.898 kb on + strand, within Synpcc7942_0859 at 862.138 kb on - strand, within Synpcc7942_0859 at 862.210 kb on + strand, within Synpcc7942_0859 at 862.264 kb on - strand, within Synpcc7942_0859 at 862.264 kb on - strand, within Synpcc7942_0859 at 862.341 kb on + strand, within Synpcc7942_0859 at 862.383 kb on + strand, within Synpcc7942_0859 at 862.401 kb on + strand, within Synpcc7942_0859 at 862.409 kb on - strand, within Synpcc7942_0859 at 862.410 kb on + strand, within Synpcc7942_0859 at 862.417 kb on - strand, within Synpcc7942_0859 at 862.468 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.780 kb on + strand at 862.834 kb on + strand at 862.847 kb on - strand at 862.853 kb on - strand at 862.858 kb on + strand at 862.858 kb on + strand at 862.969 kb on + strand at 862.978 kb on - strand at 862.994 kb on + strand at 862.994 kb on + strand at 863.081 kb on + strand at 863.138 kb on - strand, within Synpcc7942_0860 at 863.139 kb on - strand, within Synpcc7942_0860 at 863.149 kb on - strand, within Synpcc7942_0860 at 863.156 kb on + strand, within Synpcc7942_0860 at 863.156 kb on + strand, within Synpcc7942_0860 at 863.307 kb on + strand, within Synpcc7942_0860 at 863.411 kb on + strand, within Synpcc7942_0860 at 863.415 kb on + strand, within Synpcc7942_0860 at 863.416 kb on - strand, within Synpcc7942_0860 at 863.423 kb on - strand, within Synpcc7942_0860 at 863.423 kb on - strand, within Synpcc7942_0860 at 863.456 kb on + strand, within Synpcc7942_0860 at 863.499 kb on + strand, within Synpcc7942_0860 at 863.548 kb on - strand, within Synpcc7942_0860 at 863.560 kb on - strand, within Synpcc7942_0860 at 863.568 kb on + strand at 863.568 kb on + strand, within Synpcc7942_0860 at 863.629 kb on - strand, within Synpcc7942_0860 at 863.687 kb on + strand, within Synpcc7942_0860 at 863.713 kb on + strand, within Synpcc7942_0860 at 863.714 kb on + strand, within Synpcc7942_0860 at 863.731 kb on + strand, within Synpcc7942_0860 at 863.733 kb on - strand, within Synpcc7942_0860 at 863.739 kb on - strand, within Synpcc7942_0860 at 863.739 kb on - strand, within Synpcc7942_0860 at 863.801 kb on + strand, within Synpcc7942_0860 at 863.801 kb on + strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.854 kb on - strand at 863.926 kb on - strand at 863.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 859,200 - pixJ1 Synpcc7942_0858 0.78 +0.7 859,428 + pixJ1 Synpcc7942_0858 0.84 -0.5 859,684 - pixJ1 Synpcc7942_0858 0.90 -1.5 859,742 - -2.1 859,742 - +1.8 859,839 + +0.2 859,847 - -0.8 859,852 - +0.5 859,910 + +2.7 859,912 + -1.1 859,953 - -1.8 860,039 + +0.7 860,039 + +0.4 860,047 - +0.9 860,088 + +2.4 860,088 + -0.4 860,211 - +1.3 860,211 - -1.5 860,246 - -1.0 860,272 - +2.4 860,273 - -1.9 860,288 - +2.0 860,291 + -1.5 860,293 - -1.3 860,303 - -2.7 860,332 + -0.7 860,332 + -2.2 860,332 + +2.7 860,333 - +2.0 860,348 - +1.9 860,360 - +1.5 860,395 - +0.5 860,408 + Synpcc7942_0859 0.10 -1.9 860,413 - Synpcc7942_0859 0.10 +1.0 860,444 + Synpcc7942_0859 0.11 +2.7 860,452 - Synpcc7942_0859 0.12 +1.0 860,452 - Synpcc7942_0859 0.12 +1.5 860,452 - Synpcc7942_0859 0.12 -0.3 860,467 - Synpcc7942_0859 0.12 +1.3 860,488 - Synpcc7942_0859 0.13 +1.2 860,504 + Synpcc7942_0859 0.14 -1.0 860,512 - Synpcc7942_0859 0.14 -1.1 860,513 + Synpcc7942_0859 0.14 +2.0 860,521 - Synpcc7942_0859 0.14 +1.4 860,522 - Synpcc7942_0859 0.14 -0.3 860,631 + Synpcc7942_0859 0.18 -1.9 860,640 - Synpcc7942_0859 0.18 +6.0 860,701 + Synpcc7942_0859 0.20 +1.1 860,701 + Synpcc7942_0859 0.20 -1.5 860,709 - Synpcc7942_0859 0.21 -1.7 860,719 - Synpcc7942_0859 0.21 +0.0 860,720 - Synpcc7942_0859 0.21 -2.1 860,769 + Synpcc7942_0859 0.23 +1.6 860,769 + Synpcc7942_0859 0.23 -2.8 860,840 + Synpcc7942_0859 0.25 -3.2 861,110 + Synpcc7942_0859 0.35 -0.4 861,133 - Synpcc7942_0859 0.36 +3.0 861,220 - Synpcc7942_0859 0.39 -3.1 861,289 - Synpcc7942_0859 0.41 -2.6 861,391 - Synpcc7942_0859 0.45 +4.1 861,474 - Synpcc7942_0859 0.47 +2.4 861,524 + Synpcc7942_0859 0.49 +0.6 861,666 + Synpcc7942_0859 0.54 +1.4 861,667 + Synpcc7942_0859 0.54 -0.8 861,720 - Synpcc7942_0859 0.56 -0.2 861,724 + Synpcc7942_0859 0.56 -1.3 861,733 + Synpcc7942_0859 0.56 +3.7 861,734 + Synpcc7942_0859 0.57 -3.0 861,741 - Synpcc7942_0859 0.57 -2.4 861,741 - Synpcc7942_0859 0.57 -1.2 861,783 + Synpcc7942_0859 0.58 +1.2 861,805 + Synpcc7942_0859 0.59 +0.1 861,813 - Synpcc7942_0859 0.59 -1.7 861,849 - Synpcc7942_0859 0.61 -2.4 861,898 + Synpcc7942_0859 0.62 -3.7 861,898 + Synpcc7942_0859 0.62 +2.7 862,138 - Synpcc7942_0859 0.71 +2.1 862,210 + Synpcc7942_0859 0.73 -1.8 862,264 - Synpcc7942_0859 0.75 -2.7 862,264 - Synpcc7942_0859 0.75 +2.4 862,341 + Synpcc7942_0859 0.78 -1.3 862,383 + Synpcc7942_0859 0.79 +1.9 862,401 + Synpcc7942_0859 0.80 +0.2 862,409 - Synpcc7942_0859 0.80 -2.1 862,410 + Synpcc7942_0859 0.80 +0.2 862,417 - Synpcc7942_0859 0.80 -0.1 862,468 + Synpcc7942_0859 0.82 +1.7 862,470 + Synpcc7942_0859 0.82 -1.7 862,470 + Synpcc7942_0859 0.82 -0.6 862,470 + Synpcc7942_0859 0.82 -1.9 862,470 + Synpcc7942_0859 0.82 -0.2 862,478 - Synpcc7942_0859 0.83 +1.4 862,478 - Synpcc7942_0859 0.83 +0.1 862,478 - Synpcc7942_0859 0.83 -2.4 862,478 - Synpcc7942_0859 0.83 -3.2 862,478 - Synpcc7942_0859 0.83 +1.7 862,780 + -1.5 862,834 + -2.6 862,847 - -0.0 862,853 - -0.0 862,858 + -1.5 862,858 + -1.2 862,969 + -1.1 862,978 - +0.1 862,994 + +4.2 862,994 + +1.5 863,081 + +1.2 863,138 - Synpcc7942_0860 0.16 -0.0 863,139 - Synpcc7942_0860 0.16 +1.6 863,149 - Synpcc7942_0860 0.17 +1.0 863,156 + Synpcc7942_0860 0.18 +0.7 863,156 + Synpcc7942_0860 0.18 -1.6 863,307 + Synpcc7942_0860 0.33 +1.5 863,411 + Synpcc7942_0860 0.44 -1.5 863,415 + Synpcc7942_0860 0.45 +0.1 863,416 - Synpcc7942_0860 0.45 +1.0 863,423 - Synpcc7942_0860 0.45 -2.3 863,423 - Synpcc7942_0860 0.45 -1.4 863,456 + Synpcc7942_0860 0.49 +0.1 863,499 + Synpcc7942_0860 0.53 +0.7 863,548 - Synpcc7942_0860 0.58 +0.7 863,560 - Synpcc7942_0860 0.60 -0.3 863,568 + -0.0 863,568 + Synpcc7942_0860 0.61 -3.7 863,629 - Synpcc7942_0860 0.67 +2.0 863,687 + Synpcc7942_0860 0.73 +1.6 863,713 + Synpcc7942_0860 0.76 +5.0 863,714 + Synpcc7942_0860 0.76 -0.1 863,731 + Synpcc7942_0860 0.78 -0.9 863,733 - Synpcc7942_0860 0.78 -0.2 863,739 - Synpcc7942_0860 0.78 +0.9 863,739 - Synpcc7942_0860 0.78 +2.5 863,801 + Synpcc7942_0860 0.85 -2.9 863,801 + Synpcc7942_0860 0.85 -0.3 863,809 - Synpcc7942_0860 0.86 -0.2 863,809 - Synpcc7942_0860 0.86 -0.9 863,809 - Synpcc7942_0860 0.86 +0.5 863,844 - Synpcc7942_0860 0.89 -0.3 863,844 - Synpcc7942_0860 0.89 -0.6 863,844 - Synpcc7942_0860 0.89 +0.2 863,854 - -2.1 863,926 - -0.2 863,951 - +0.8
Or see this region's nucleotide sequence