Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gor and Synpcc7942_0843 are separated by 98 nucleotides Synpcc7942_0843 and Synpcc7942_0844 are separated by 163 nucleotides Synpcc7942_0844 and Synpcc7942_0845 are separated by 63 nucleotides Synpcc7942_0845 and Synpcc7942_0846 are separated by 183 nucleotides
Synpcc7942_0842: gor - glutathione reductase, at 837,065 to 838,405
gor
Synpcc7942_0843: Synpcc7942_0843 - hypothetical protein, at 838,504 to 838,935
_0843
Synpcc7942_0844: Synpcc7942_0844 - Phosphoesterase PHP-like, at 839,099 to 839,809
_0844
Synpcc7942_0845: Synpcc7942_0845 - hypothetical protein, at 839,873 to 840,079
_0845
Synpcc7942_0846: Synpcc7942_0846 - hypothetical protein, at 840,263 to 841,081
_0846
Position (kb) 839
840 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 838.181 kb on - strand, within gor at 838.189 kb on - strand, within gor at 838.203 kb on - strand, within gor at 838.204 kb on - strand, within gor at 838.204 kb on - strand, within gor at 838.238 kb on + strand, within gor at 838.256 kb on + strand, within gor at 838.414 kb on + strand at 838.415 kb on - strand at 838.450 kb on + strand at 838.473 kb on + strand at 838.473 kb on + strand at 838.475 kb on - strand at 838.482 kb on + strand at 838.485 kb on - strand at 838.485 kb on - strand at 838.539 kb on + strand at 838.540 kb on + strand at 838.542 kb on - strand at 838.633 kb on - strand, within Synpcc7942_0843 at 838.633 kb on - strand, within Synpcc7942_0843 at 838.648 kb on + strand, within Synpcc7942_0843 at 838.651 kb on - strand, within Synpcc7942_0843 at 838.656 kb on - strand, within Synpcc7942_0843 at 838.656 kb on - strand, within Synpcc7942_0843 at 838.666 kb on + strand at 838.676 kb on + strand, within Synpcc7942_0843 at 838.676 kb on + strand, within Synpcc7942_0843 at 838.684 kb on - strand, within Synpcc7942_0843 at 838.684 kb on - strand, within Synpcc7942_0843 at 838.687 kb on + strand, within Synpcc7942_0843 at 838.695 kb on - strand, within Synpcc7942_0843 at 838.717 kb on - strand, within Synpcc7942_0843 at 838.757 kb on - strand, within Synpcc7942_0843 at 838.757 kb on - strand, within Synpcc7942_0843 at 838.757 kb on - strand, within Synpcc7942_0843 at 838.785 kb on - strand, within Synpcc7942_0843 at 838.797 kb on - strand, within Synpcc7942_0843 at 838.833 kb on - strand, within Synpcc7942_0843 at 838.848 kb on + strand, within Synpcc7942_0843 at 838.863 kb on - strand, within Synpcc7942_0843 at 838.895 kb on - strand at 838.985 kb on + strand at 838.996 kb on + strand at 839.002 kb on - strand at 839.005 kb on + strand at 839.005 kb on + strand at 839.026 kb on - strand at 839.028 kb on + strand at 839.084 kb on - strand at 839.094 kb on - strand at 839.124 kb on - strand at 839.194 kb on + strand, within Synpcc7942_0844 at 839.194 kb on + strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.202 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.222 kb on - strand, within Synpcc7942_0844 at 839.248 kb on - strand, within Synpcc7942_0844 at 839.252 kb on + strand, within Synpcc7942_0844 at 839.309 kb on + strand, within Synpcc7942_0844 at 839.340 kb on - strand, within Synpcc7942_0844 at 839.341 kb on - strand, within Synpcc7942_0844 at 839.341 kb on - strand, within Synpcc7942_0844 at 839.400 kb on - strand, within Synpcc7942_0844 at 839.401 kb on + strand at 839.401 kb on + strand, within Synpcc7942_0844 at 839.406 kb on + strand, within Synpcc7942_0844 at 839.409 kb on - strand, within Synpcc7942_0844 at 839.414 kb on - strand at 839.414 kb on - strand, within Synpcc7942_0844 at 839.453 kb on + strand, within Synpcc7942_0844 at 839.468 kb on + strand, within Synpcc7942_0844 at 839.470 kb on + strand, within Synpcc7942_0844 at 839.481 kb on + strand, within Synpcc7942_0844 at 839.499 kb on + strand, within Synpcc7942_0844 at 839.504 kb on + strand, within Synpcc7942_0844 at 839.514 kb on - strand, within Synpcc7942_0844 at 839.518 kb on - strand, within Synpcc7942_0844 at 839.576 kb on + strand, within Synpcc7942_0844 at 839.584 kb on - strand, within Synpcc7942_0844 at 839.602 kb on + strand, within Synpcc7942_0844 at 839.620 kb on - strand, within Synpcc7942_0844 at 839.630 kb on + strand, within Synpcc7942_0844 at 839.644 kb on + strand, within Synpcc7942_0844 at 839.654 kb on - strand, within Synpcc7942_0844 at 839.679 kb on + strand, within Synpcc7942_0844 at 839.747 kb on - strand at 839.747 kb on - strand at 839.815 kb on + strand at 839.823 kb on - strand at 839.830 kb on + strand at 839.830 kb on + strand at 839.830 kb on + strand at 839.838 kb on - strand at 839.838 kb on - strand at 839.856 kb on - strand at 839.870 kb on + strand at 839.870 kb on + strand at 839.870 kb on + strand at 839.878 kb on - strand at 839.878 kb on - strand at 839.888 kb on - strand at 839.888 kb on - strand at 839.900 kb on + strand, within Synpcc7942_0845 at 839.924 kb on - strand, within Synpcc7942_0845 at 839.970 kb on - strand, within Synpcc7942_0845 at 839.972 kb on + strand, within Synpcc7942_0845 at 839.990 kb on + strand, within Synpcc7942_0845 at 839.998 kb on - strand, within Synpcc7942_0845 at 840.008 kb on - strand, within Synpcc7942_0845 at 840.008 kb on - strand, within Synpcc7942_0845 at 840.024 kb on + strand, within Synpcc7942_0845 at 840.024 kb on + strand, within Synpcc7942_0845 at 840.029 kb on + strand, within Synpcc7942_0845 at 840.095 kb on + strand at 840.114 kb on + strand at 840.131 kb on + strand at 840.137 kb on + strand at 840.137 kb on + strand at 840.137 kb on + strand at 840.145 kb on - strand at 840.145 kb on - strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.147 kb on + strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.155 kb on - strand at 840.171 kb on + strand at 840.186 kb on - strand at 840.231 kb on + strand at 840.238 kb on - strand at 840.288 kb on - strand at 840.314 kb on - strand at 840.317 kb on + strand at 840.322 kb on - strand at 840.326 kb on + strand at 840.340 kb on + strand at 840.369 kb on - strand, within Synpcc7942_0846 at 840.386 kb on + strand, within Synpcc7942_0846 at 840.389 kb on - strand, within Synpcc7942_0846 at 840.403 kb on - strand, within Synpcc7942_0846 at 840.436 kb on + strand, within Synpcc7942_0846 at 840.439 kb on - strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.462 kb on + strand, within Synpcc7942_0846 at 840.482 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.483 kb on + strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.491 kb on - strand, within Synpcc7942_0846 at 840.509 kb on - strand at 840.509 kb on - strand, within Synpcc7942_0846 at 840.511 kb on - strand, within Synpcc7942_0846 at 840.528 kb on + strand, within Synpcc7942_0846 at 840.553 kb on - strand, within Synpcc7942_0846 at 840.572 kb on + strand, within Synpcc7942_0846 at 840.572 kb on + strand, within Synpcc7942_0846 at 840.593 kb on + strand, within Synpcc7942_0846 at 840.601 kb on + strand, within Synpcc7942_0846 at 840.603 kb on + strand, within Synpcc7942_0846 at 840.619 kb on - strand, within Synpcc7942_0846 at 840.628 kb on - strand, within Synpcc7942_0846 at 840.634 kb on + strand, within Synpcc7942_0846 at 840.645 kb on - strand, within Synpcc7942_0846 at 840.655 kb on - strand, within Synpcc7942_0846 at 840.660 kb on - strand, within Synpcc7942_0846 at 840.665 kb on - strand, within Synpcc7942_0846 at 840.665 kb on - strand, within Synpcc7942_0846 at 840.686 kb on + strand, within Synpcc7942_0846 at 840.688 kb on + strand, within Synpcc7942_0846 at 840.698 kb on + strand, within Synpcc7942_0846 at 840.707 kb on - strand, within Synpcc7942_0846 at 840.723 kb on - strand, within Synpcc7942_0846 at 840.759 kb on + strand, within Synpcc7942_0846 at 840.767 kb on - strand, within Synpcc7942_0846
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 838,181 - gor Synpcc7942_0842 0.83 -0.0 838,189 - gor Synpcc7942_0842 0.84 -1.7 838,203 - gor Synpcc7942_0842 0.85 +0.6 838,204 - gor Synpcc7942_0842 0.85 -0.4 838,204 - gor Synpcc7942_0842 0.85 -0.1 838,238 + gor Synpcc7942_0842 0.87 +1.2 838,256 + gor Synpcc7942_0842 0.89 +1.3 838,414 + +1.2 838,415 - +0.7 838,450 + +1.9 838,473 + +2.8 838,473 + +0.6 838,475 - -0.1 838,482 + -1.8 838,485 - +2.3 838,485 - +0.5 838,539 + -0.3 838,540 + +1.3 838,542 - -1.2 838,633 - Synpcc7942_0843 0.30 -1.4 838,633 - Synpcc7942_0843 0.30 -1.9 838,648 + Synpcc7942_0843 0.33 -2.6 838,651 - Synpcc7942_0843 0.34 -0.4 838,656 - Synpcc7942_0843 0.35 +0.4 838,656 - Synpcc7942_0843 0.35 +1.2 838,666 + +0.7 838,676 + Synpcc7942_0843 0.40 +0.6 838,676 + Synpcc7942_0843 0.40 +0.6 838,684 - Synpcc7942_0843 0.42 -2.4 838,684 - Synpcc7942_0843 0.42 +1.7 838,687 + Synpcc7942_0843 0.42 -0.4 838,695 - Synpcc7942_0843 0.44 +0.4 838,717 - Synpcc7942_0843 0.49 +0.7 838,757 - Synpcc7942_0843 0.59 +1.6 838,757 - Synpcc7942_0843 0.59 -0.4 838,757 - Synpcc7942_0843 0.59 -0.3 838,785 - Synpcc7942_0843 0.65 +0.2 838,797 - Synpcc7942_0843 0.68 -0.1 838,833 - Synpcc7942_0843 0.76 +0.6 838,848 + Synpcc7942_0843 0.80 -0.4 838,863 - Synpcc7942_0843 0.83 -2.0 838,895 - +4.3 838,985 + +0.4 838,996 + +0.7 839,002 - -1.2 839,005 + -0.3 839,005 + +1.6 839,026 - +2.2 839,028 + -1.4 839,084 - -0.6 839,094 - -0.5 839,124 - -0.0 839,194 + Synpcc7942_0844 0.13 -2.2 839,194 + Synpcc7942_0844 0.13 -0.0 839,202 - Synpcc7942_0844 0.14 -2.7 839,202 - Synpcc7942_0844 0.14 +0.7 839,202 - Synpcc7942_0844 0.14 -2.8 839,222 - Synpcc7942_0844 0.17 -1.7 839,222 - Synpcc7942_0844 0.17 -2.0 839,222 - Synpcc7942_0844 0.17 -1.3 839,222 - Synpcc7942_0844 0.17 -3.6 839,248 - Synpcc7942_0844 0.21 -1.2 839,252 + Synpcc7942_0844 0.22 +0.7 839,309 + Synpcc7942_0844 0.30 -2.9 839,340 - Synpcc7942_0844 0.34 -1.2 839,341 - Synpcc7942_0844 0.34 -2.1 839,341 - Synpcc7942_0844 0.34 -1.2 839,400 - Synpcc7942_0844 0.42 +1.0 839,401 + -0.3 839,401 + Synpcc7942_0844 0.42 -2.3 839,406 + Synpcc7942_0844 0.43 -2.1 839,409 - Synpcc7942_0844 0.44 -2.5 839,414 - +2.0 839,414 - Synpcc7942_0844 0.44 -3.1 839,453 + Synpcc7942_0844 0.50 -1.5 839,468 + Synpcc7942_0844 0.52 -1.9 839,470 + Synpcc7942_0844 0.52 -2.2 839,481 + Synpcc7942_0844 0.54 +0.4 839,499 + Synpcc7942_0844 0.56 -1.5 839,504 + Synpcc7942_0844 0.57 -0.0 839,514 - Synpcc7942_0844 0.58 -1.2 839,518 - Synpcc7942_0844 0.59 -2.8 839,576 + Synpcc7942_0844 0.67 +1.6 839,584 - Synpcc7942_0844 0.68 -2.7 839,602 + Synpcc7942_0844 0.71 -2.1 839,620 - Synpcc7942_0844 0.73 -2.9 839,630 + Synpcc7942_0844 0.75 -2.3 839,644 + Synpcc7942_0844 0.77 -1.8 839,654 - Synpcc7942_0844 0.78 -2.2 839,679 + Synpcc7942_0844 0.82 -0.8 839,747 - -4.0 839,747 - -2.9 839,815 + -0.5 839,823 - -1.4 839,830 + -1.5 839,830 + -3.2 839,830 + -1.3 839,838 - -1.2 839,838 - -1.0 839,856 - +0.0 839,870 + -0.7 839,870 + +0.2 839,870 + -2.4 839,878 - -2.5 839,878 - -2.4 839,888 - +0.5 839,888 - +0.4 839,900 + Synpcc7942_0845 0.13 +0.0 839,924 - Synpcc7942_0845 0.25 -0.1 839,970 - Synpcc7942_0845 0.47 -0.6 839,972 + Synpcc7942_0845 0.48 +0.8 839,990 + Synpcc7942_0845 0.57 -2.8 839,998 - Synpcc7942_0845 0.60 +0.5 840,008 - Synpcc7942_0845 0.65 -0.3 840,008 - Synpcc7942_0845 0.65 -0.3 840,024 + Synpcc7942_0845 0.73 -1.3 840,024 + Synpcc7942_0845 0.73 +1.2 840,029 + Synpcc7942_0845 0.75 -0.8 840,095 + -0.3 840,114 + +1.9 840,131 + -0.7 840,137 + +0.6 840,137 + +0.3 840,137 + -3.1 840,145 - +2.4 840,145 - -1.8 840,147 + -0.6 840,147 + -1.9 840,147 + -4.5 840,147 + -2.9 840,147 + +1.2 840,147 + +0.3 840,147 + +0.1 840,147 + +1.1 840,147 + -0.4 840,147 + +1.5 840,147 + -2.9 840,147 + -2.7 840,147 + +0.2 840,147 + +1.7 840,147 + -1.0 840,147 + -0.8 840,155 - +0.8 840,155 - +0.7 840,155 - +2.0 840,155 - -1.6 840,155 - +0.2 840,155 - -1.3 840,155 - -0.8 840,155 - -2.7 840,155 - -0.5 840,155 - -2.6 840,155 - -1.9 840,155 - -1.3 840,155 - +1.4 840,171 + -1.4 840,186 - +1.1 840,231 + -3.4 840,238 - +0.7 840,288 - +0.2 840,314 - -1.1 840,317 + -0.6 840,322 - -0.5 840,326 + -0.9 840,340 + -2.0 840,369 - Synpcc7942_0846 0.13 +1.0 840,386 + Synpcc7942_0846 0.15 -0.7 840,389 - Synpcc7942_0846 0.15 -0.0 840,403 - Synpcc7942_0846 0.17 -1.5 840,436 + Synpcc7942_0846 0.21 -1.4 840,439 - Synpcc7942_0846 0.21 -2.1 840,462 + Synpcc7942_0846 0.24 -0.1 840,462 + Synpcc7942_0846 0.24 -1.2 840,462 + Synpcc7942_0846 0.24 +1.3 840,482 + Synpcc7942_0846 0.27 -1.2 840,483 + Synpcc7942_0846 0.27 +2.1 840,483 + Synpcc7942_0846 0.27 -1.5 840,483 + Synpcc7942_0846 0.27 -3.0 840,491 - Synpcc7942_0846 0.28 -1.6 840,491 - Synpcc7942_0846 0.28 +1.8 840,491 - Synpcc7942_0846 0.28 +0.6 840,491 - Synpcc7942_0846 0.28 +0.9 840,509 - -0.3 840,509 - Synpcc7942_0846 0.30 +2.9 840,511 - Synpcc7942_0846 0.30 -0.0 840,528 + Synpcc7942_0846 0.32 -0.0 840,553 - Synpcc7942_0846 0.35 +2.2 840,572 + Synpcc7942_0846 0.38 -1.6 840,572 + Synpcc7942_0846 0.38 -0.3 840,593 + Synpcc7942_0846 0.40 +2.2 840,601 + Synpcc7942_0846 0.41 -0.6 840,603 + Synpcc7942_0846 0.42 -0.0 840,619 - Synpcc7942_0846 0.43 +1.8 840,628 - Synpcc7942_0846 0.45 +0.9 840,634 + Synpcc7942_0846 0.45 -2.4 840,645 - Synpcc7942_0846 0.47 -1.5 840,655 - Synpcc7942_0846 0.48 +0.0 840,660 - Synpcc7942_0846 0.48 -0.8 840,665 - Synpcc7942_0846 0.49 +2.2 840,665 - Synpcc7942_0846 0.49 +1.1 840,686 + Synpcc7942_0846 0.52 +2.5 840,688 + Synpcc7942_0846 0.52 +1.0 840,698 + Synpcc7942_0846 0.53 -1.9 840,707 - Synpcc7942_0846 0.54 -0.3 840,723 - Synpcc7942_0846 0.56 +1.0 840,759 + Synpcc7942_0846 0.61 -2.1 840,767 - Synpcc7942_0846 0.62 -2.5
Or see this region's nucleotide sequence