Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0833 and Synpcc7942_0834 are separated by 399 nucleotides
Synpcc7942_0833: Synpcc7942_0833 - hypothetical protein, at 827,112 to 828,182
_0833
Synpcc7942_0834: Synpcc7942_0834 - hypothetical protein, at 828,582 to 829,235
_0834
Position (kb) 827
828
829 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 826.158 kb on + strand at 826.172 kb on - strand at 826.202 kb on - strand at 826.221 kb on - strand at 826.247 kb on - strand at 826.341 kb on + strand at 826.373 kb on - strand at 826.375 kb on + strand at 826.375 kb on + strand at 826.377 kb on + strand at 826.377 kb on + strand at 826.377 kb on + strand at 826.377 kb on + strand at 826.385 kb on - strand at 826.411 kb on + strand at 826.415 kb on - strand at 826.434 kb on + strand at 826.449 kb on - strand at 826.512 kb on - strand at 826.514 kb on + strand at 826.519 kb on - strand at 826.549 kb on + strand at 826.550 kb on + strand at 826.557 kb on - strand at 826.567 kb on + strand at 826.575 kb on - strand at 826.592 kb on - strand at 826.693 kb on - strand at 826.708 kb on + strand at 826.737 kb on - strand at 826.995 kb on - strand at 827.056 kb on - strand at 827.126 kb on + strand at 827.204 kb on + strand at 827.253 kb on - strand, within Synpcc7942_0833 at 827.259 kb on - strand, within Synpcc7942_0833 at 827.269 kb on + strand, within Synpcc7942_0833 at 827.277 kb on - strand, within Synpcc7942_0833 at 827.304 kb on + strand, within Synpcc7942_0833 at 827.370 kb on + strand, within Synpcc7942_0833 at 827.373 kb on - strand, within Synpcc7942_0833 at 827.387 kb on + strand, within Synpcc7942_0833 at 827.395 kb on - strand, within Synpcc7942_0833 at 827.395 kb on - strand, within Synpcc7942_0833 at 827.408 kb on + strand, within Synpcc7942_0833 at 827.408 kb on + strand, within Synpcc7942_0833 at 827.431 kb on + strand, within Synpcc7942_0833 at 827.431 kb on + strand, within Synpcc7942_0833 at 827.439 kb on - strand, within Synpcc7942_0833 at 827.439 kb on - strand, within Synpcc7942_0833 at 827.455 kb on + strand, within Synpcc7942_0833 at 827.466 kb on + strand, within Synpcc7942_0833 at 827.466 kb on + strand, within Synpcc7942_0833 at 827.474 kb on - strand, within Synpcc7942_0833 at 827.474 kb on - strand, within Synpcc7942_0833 at 827.489 kb on + strand, within Synpcc7942_0833 at 827.513 kb on + strand, within Synpcc7942_0833 at 827.521 kb on - strand, within Synpcc7942_0833 at 827.588 kb on - strand, within Synpcc7942_0833 at 827.627 kb on + strand, within Synpcc7942_0833 at 827.627 kb on + strand, within Synpcc7942_0833 at 827.628 kb on + strand, within Synpcc7942_0833 at 827.629 kb on + strand, within Synpcc7942_0833 at 827.636 kb on - strand, within Synpcc7942_0833 at 827.666 kb on + strand, within Synpcc7942_0833 at 827.688 kb on - strand, within Synpcc7942_0833 at 827.857 kb on - strand, within Synpcc7942_0833 at 827.866 kb on + strand, within Synpcc7942_0833 at 827.904 kb on - strand, within Synpcc7942_0833 at 827.961 kb on + strand, within Synpcc7942_0833 at 828.047 kb on + strand, within Synpcc7942_0833 at 828.047 kb on + strand, within Synpcc7942_0833 at 828.111 kb on + strand at 828.144 kb on - strand at 828.160 kb on + strand at 828.168 kb on - strand at 828.185 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.195 kb on + strand at 828.195 kb on + strand at 828.201 kb on - strand at 828.203 kb on - strand at 828.203 kb on - strand at 828.214 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.275 kb on + strand at 828.288 kb on - strand at 828.343 kb on - strand at 828.345 kb on + strand at 828.356 kb on - strand at 828.368 kb on - strand at 828.374 kb on - strand at 828.472 kb on - strand at 828.472 kb on - strand at 828.473 kb on - strand at 828.475 kb on + strand at 828.499 kb on - strand at 828.532 kb on - strand at 828.532 kb on - strand at 828.564 kb on + strand at 828.570 kb on - strand at 828.572 kb on - strand at 828.593 kb on + strand at 828.664 kb on + strand, within Synpcc7942_0834 at 828.670 kb on - strand, within Synpcc7942_0834 at 828.682 kb on - strand, within Synpcc7942_0834 at 828.719 kb on + strand, within Synpcc7942_0834 at 828.727 kb on - strand, within Synpcc7942_0834 at 828.741 kb on + strand, within Synpcc7942_0834 at 828.748 kb on + strand, within Synpcc7942_0834 at 828.749 kb on - strand, within Synpcc7942_0834 at 828.761 kb on - strand, within Synpcc7942_0834 at 828.769 kb on + strand, within Synpcc7942_0834 at 828.775 kb on + strand, within Synpcc7942_0834 at 828.783 kb on - strand, within Synpcc7942_0834 at 828.795 kb on - strand, within Synpcc7942_0834 at 828.824 kb on + strand, within Synpcc7942_0834 at 828.833 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.928 kb on + strand, within Synpcc7942_0834 at 828.931 kb on + strand, within Synpcc7942_0834 at 828.936 kb on + strand, within Synpcc7942_0834 at 828.949 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.985 kb on - strand, within Synpcc7942_0834 at 829.015 kb on - strand, within Synpcc7942_0834 at 829.025 kb on + strand, within Synpcc7942_0834 at 829.031 kb on - strand, within Synpcc7942_0834 at 829.158 kb on + strand, within Synpcc7942_0834 at 829.168 kb on - strand, within Synpcc7942_0834
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 826,158 + +0.7 826,172 - +3.7 826,202 - -1.2 826,221 - -0.4 826,247 - -2.5 826,341 + +0.7 826,373 - +0.4 826,375 + +0.9 826,375 + -2.6 826,377 + -0.8 826,377 + -3.0 826,377 + -0.1 826,377 + -2.2 826,385 - -1.5 826,411 + +0.7 826,415 - -0.3 826,434 + +1.7 826,449 - +0.9 826,512 - +2.1 826,514 + -2.8 826,519 - +1.6 826,549 + +0.6 826,550 + +0.9 826,557 - -1.3 826,567 + +0.8 826,575 - +0.3 826,592 - -1.0 826,693 - -1.0 826,708 + -2.0 826,737 - -1.9 826,995 - +1.5 827,056 - -0.2 827,126 + +4.5 827,204 + +1.8 827,253 - Synpcc7942_0833 0.13 -2.7 827,259 - Synpcc7942_0833 0.14 -2.6 827,269 + Synpcc7942_0833 0.15 -2.7 827,277 - Synpcc7942_0833 0.15 -1.9 827,304 + Synpcc7942_0833 0.18 -1.3 827,370 + Synpcc7942_0833 0.24 -1.7 827,373 - Synpcc7942_0833 0.24 -2.5 827,387 + Synpcc7942_0833 0.26 -4.3 827,395 - Synpcc7942_0833 0.26 -4.2 827,395 - Synpcc7942_0833 0.26 -0.8 827,408 + Synpcc7942_0833 0.28 -3.9 827,408 + Synpcc7942_0833 0.28 -3.0 827,431 + Synpcc7942_0833 0.30 -3.3 827,431 + Synpcc7942_0833 0.30 +1.2 827,439 - Synpcc7942_0833 0.31 -2.6 827,439 - Synpcc7942_0833 0.31 -4.5 827,455 + Synpcc7942_0833 0.32 +0.6 827,466 + Synpcc7942_0833 0.33 -1.3 827,466 + Synpcc7942_0833 0.33 -5.2 827,474 - Synpcc7942_0833 0.34 -2.3 827,474 - Synpcc7942_0833 0.34 -0.4 827,489 + Synpcc7942_0833 0.35 -2.5 827,513 + Synpcc7942_0833 0.37 +0.1 827,521 - Synpcc7942_0833 0.38 +1.9 827,588 - Synpcc7942_0833 0.44 -2.2 827,627 + Synpcc7942_0833 0.48 -3.3 827,627 + Synpcc7942_0833 0.48 +1.1 827,628 + Synpcc7942_0833 0.48 -2.7 827,629 + Synpcc7942_0833 0.48 -1.2 827,636 - Synpcc7942_0833 0.49 -3.8 827,666 + Synpcc7942_0833 0.52 -3.2 827,688 - Synpcc7942_0833 0.54 -4.7 827,857 - Synpcc7942_0833 0.70 -2.1 827,866 + Synpcc7942_0833 0.70 -4.4 827,904 - Synpcc7942_0833 0.74 -4.5 827,961 + Synpcc7942_0833 0.79 -3.6 828,047 + Synpcc7942_0833 0.87 -2.6 828,047 + Synpcc7942_0833 0.87 -4.8 828,111 + +1.9 828,144 - +0.5 828,160 + +2.5 828,168 - +2.0 828,185 + -0.1 828,193 + +0.4 828,193 + +1.3 828,193 + -2.0 828,193 + -1.2 828,195 + -0.8 828,195 + +1.1 828,201 - +0.7 828,203 - -1.0 828,203 - -3.3 828,214 + +0.3 828,219 + +1.3 828,219 + -1.5 828,219 + -1.1 828,219 + -2.0 828,219 + +0.3 828,219 + +0.6 828,219 + +0.1 828,227 - -0.0 828,227 - +0.7 828,227 - +1.3 828,227 - -0.3 828,227 - +0.2 828,275 + +0.9 828,288 - +2.3 828,343 - +1.7 828,345 + +0.9 828,356 - -0.0 828,368 - +0.2 828,374 - +1.8 828,472 - -0.6 828,472 - -1.5 828,473 - -2.4 828,475 + -1.1 828,499 - +1.8 828,532 - +2.4 828,532 - -0.0 828,564 + +1.6 828,570 - +0.7 828,572 - +1.8 828,593 + +0.7 828,664 + Synpcc7942_0834 0.13 -0.7 828,670 - Synpcc7942_0834 0.13 -0.5 828,682 - Synpcc7942_0834 0.15 +0.9 828,719 + Synpcc7942_0834 0.21 +1.0 828,727 - Synpcc7942_0834 0.22 -1.9 828,741 + Synpcc7942_0834 0.24 +0.5 828,748 + Synpcc7942_0834 0.25 +0.0 828,749 - Synpcc7942_0834 0.26 +1.2 828,761 - Synpcc7942_0834 0.27 -0.0 828,769 + Synpcc7942_0834 0.29 -2.4 828,775 + Synpcc7942_0834 0.30 +1.2 828,783 - Synpcc7942_0834 0.31 -0.5 828,795 - Synpcc7942_0834 0.33 +2.3 828,824 + Synpcc7942_0834 0.37 -1.6 828,833 + Synpcc7942_0834 0.38 +0.2 828,896 + Synpcc7942_0834 0.48 -0.6 828,896 + Synpcc7942_0834 0.48 +1.4 828,904 - Synpcc7942_0834 0.49 +1.6 828,904 - Synpcc7942_0834 0.49 -1.9 828,904 - Synpcc7942_0834 0.49 +0.7 828,928 + Synpcc7942_0834 0.53 +0.4 828,931 + Synpcc7942_0834 0.53 -0.6 828,936 + Synpcc7942_0834 0.54 -1.9 828,949 - Synpcc7942_0834 0.56 -1.8 828,977 - Synpcc7942_0834 0.60 -2.9 828,977 - Synpcc7942_0834 0.60 -0.6 828,985 - Synpcc7942_0834 0.62 -0.1 829,015 - Synpcc7942_0834 0.66 -0.1 829,025 + Synpcc7942_0834 0.68 -0.6 829,031 - Synpcc7942_0834 0.69 +3.0 829,158 + Synpcc7942_0834 0.88 -0.9 829,168 - Synpcc7942_0834 0.90 +2.0
Or see this region's nucleotide sequence