Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0817

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0816 and Synpcc7942_0817 are separated by 104 nucleotidesSynpcc7942_0817 and purS are separated by 231 nucleotidespurS and purL overlap by 4 nucleotides Synpcc7942_0816: Synpcc7942_0816 - diguanylate cyclase/phosphodiesterase, at 810,181 to 812,226 _0816 Synpcc7942_0817: Synpcc7942_0817 - putative ferric uptake regulator, FUR family, at 812,331 to 812,723 _0817 Synpcc7942_0818: purS - phosphoribosylformylglycinamidine synthase subunit PurS, at 812,955 to 813,224 purS Synpcc7942_0819: purL - phosphoribosylformylglycinamidine synthase subunit I, at 813,221 to 813,886 purL Position (kb) 812 813Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 811.361 kb on + strand, within Synpcc7942_0816at 811.387 kb on - strand, within Synpcc7942_0816at 811.397 kb on + strandat 811.421 kb on - strandat 811.440 kb on - strand, within Synpcc7942_0816at 811.445 kb on - strand, within Synpcc7942_0816at 811.622 kb on + strand, within Synpcc7942_0816at 811.644 kb on - strand, within Synpcc7942_0816at 811.650 kb on - strand, within Synpcc7942_0816at 811.670 kb on + strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.702 kb on - strand, within Synpcc7942_0816at 811.758 kb on - strand, within Synpcc7942_0816at 811.865 kb on + strand, within Synpcc7942_0816at 811.871 kb on + strand, within Synpcc7942_0816at 811.873 kb on - strand, within Synpcc7942_0816at 812.156 kb on + strandat 812.217 kb on - strandat 812.227 kb on + strandat 812.375 kb on + strand, within Synpcc7942_0817at 812.383 kb on - strand, within Synpcc7942_0817at 812.409 kb on + strand, within Synpcc7942_0817at 812.420 kb on + strand, within Synpcc7942_0817at 812.433 kb on + strand, within Synpcc7942_0817at 812.433 kb on + strand, within Synpcc7942_0817at 812.438 kb on + strand, within Synpcc7942_0817at 812.441 kb on - strand, within Synpcc7942_0817at 812.441 kb on - strand, within Synpcc7942_0817at 812.473 kb on - strand, within Synpcc7942_0817at 812.475 kb on - strand, within Synpcc7942_0817at 812.508 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.515 kb on + strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.523 kb on - strand, within Synpcc7942_0817at 812.528 kb on - strand, within Synpcc7942_0817at 812.558 kb on + strand, within Synpcc7942_0817at 812.566 kb on - strand, within Synpcc7942_0817at 812.568 kb on + strand, within Synpcc7942_0817at 812.594 kb on - strand, within Synpcc7942_0817at 812.605 kb on + strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.621 kb on - strand, within Synpcc7942_0817at 812.638 kb on - strand, within Synpcc7942_0817at 812.643 kb on - strand, within Synpcc7942_0817at 812.645 kb on - strand, within Synpcc7942_0817at 812.651 kb on - strand, within Synpcc7942_0817at 812.661 kb on - strand, within Synpcc7942_0817at 812.663 kb on + strand, within Synpcc7942_0817at 812.673 kb on + strand, within Synpcc7942_0817at 812.673 kb on + strand, within Synpcc7942_0817at 812.681 kb on - strand, within Synpcc7942_0817at 812.718 kb on + strandat 812.718 kb on + strandat 812.718 kb on + strandat 812.725 kb on + strandat 812.727 kb on - strandat 812.731 kb on + strandat 812.744 kb on + strandat 812.745 kb on + strandat 812.745 kb on + strandat 812.759 kb on - strandat 812.774 kb on - strandat 812.778 kb on + strandat 812.779 kb on + strandat 812.793 kb on - strandat 812.793 kb on - strandat 812.838 kb on + strandat 812.846 kb on + strandat 812.851 kb on + strandat 812.854 kb on - strandat 812.873 kb on - strandat 812.893 kb on + strandat 812.904 kb on - strandat 813.219 kb on - strandat 813.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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811,361 + Synpcc7942_0816 0.58 -0.3
811,387 - Synpcc7942_0816 0.59 -1.7
811,397 + -1.2
811,421 - -0.0
811,440 - Synpcc7942_0816 0.62 -2.0
811,445 - Synpcc7942_0816 0.62 -2.3
811,622 + Synpcc7942_0816 0.70 -1.6
811,644 - Synpcc7942_0816 0.72 -2.1
811,650 - Synpcc7942_0816 0.72 -2.5
811,670 + Synpcc7942_0816 0.73 -1.2
811,702 - Synpcc7942_0816 0.74 +0.9
811,702 - Synpcc7942_0816 0.74 -2.5
811,702 - Synpcc7942_0816 0.74 +1.8
811,758 - Synpcc7942_0816 0.77 -2.3
811,865 + Synpcc7942_0816 0.82 +2.7
811,871 + Synpcc7942_0816 0.83 +1.6
811,873 - Synpcc7942_0816 0.83 -2.9
812,156 + +0.8
812,217 - -1.6
812,227 + +3.2
812,375 + Synpcc7942_0817 0.11 -3.2
812,383 - Synpcc7942_0817 0.13 -1.0
812,409 + Synpcc7942_0817 0.20 -1.5
812,420 + Synpcc7942_0817 0.23 -3.4
812,433 + Synpcc7942_0817 0.26 -1.7
812,433 + Synpcc7942_0817 0.26 -4.9
812,438 + Synpcc7942_0817 0.27 -1.9
812,441 - Synpcc7942_0817 0.28 -1.1
812,441 - Synpcc7942_0817 0.28 -4.0
812,473 - Synpcc7942_0817 0.36 -3.0
812,475 - Synpcc7942_0817 0.37 -3.1
812,508 + Synpcc7942_0817 0.45 -2.2
812,515 + Synpcc7942_0817 0.47 -1.6
812,515 + Synpcc7942_0817 0.47 -2.6
812,515 + Synpcc7942_0817 0.47 -1.3
812,523 - Synpcc7942_0817 0.49 -2.1
812,523 - Synpcc7942_0817 0.49 -2.6
812,523 - Synpcc7942_0817 0.49 -2.8
812,528 - Synpcc7942_0817 0.50 -1.1
812,558 + Synpcc7942_0817 0.58 -2.9
812,566 - Synpcc7942_0817 0.60 -3.5
812,568 + Synpcc7942_0817 0.60 -2.4
812,594 - Synpcc7942_0817 0.67 -3.0
812,605 + Synpcc7942_0817 0.70 -1.5
812,621 - Synpcc7942_0817 0.74 -1.4
812,621 - Synpcc7942_0817 0.74 -2.6
812,621 - Synpcc7942_0817 0.74 -1.8
812,638 - Synpcc7942_0817 0.78 -1.2
812,643 - Synpcc7942_0817 0.79 -2.7
812,645 - Synpcc7942_0817 0.80 -4.0
812,651 - Synpcc7942_0817 0.81 -2.1
812,661 - Synpcc7942_0817 0.84 -1.8
812,663 + Synpcc7942_0817 0.84 -3.9
812,673 + Synpcc7942_0817 0.87 -0.8
812,673 + Synpcc7942_0817 0.87 -1.0
812,681 - Synpcc7942_0817 0.89 -1.9
812,718 + -2.1
812,718 + +0.6
812,718 + +2.3
812,725 + -1.7
812,727 - -0.0
812,731 + -2.2
812,744 + -0.8
812,745 + -2.5
812,745 + -3.8
812,759 - +2.2
812,774 - -2.7
812,778 + +2.7
812,779 + -4.1
812,793 - -0.6
812,793 - +1.7
812,838 + -3.9
812,846 + -2.7
812,851 + -1.5
812,854 - -0.3
812,873 - -1.2
812,893 + +0.6
812,904 - -0.0
813,219 - +0.7
813,219 - -1.7

Or see this region's nucleotide sequence