Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0814 and livF are separated by 6 nucleotides livF and Synpcc7942_0816 are separated by 84 nucleotides Synpcc7942_0816 and Synpcc7942_0817 are separated by 104 nucleotides Synpcc7942_0817 and purS are separated by 231 nucleotides purS and purL overlap by 4 nucleotides
Synpcc7942_0814: Synpcc7942_0814 - ferredoxin-like protein, at 809,134 to 809,358
_0814
Synpcc7942_0815: livF - ATPase, at 809,365 to 810,096
livF
Synpcc7942_0816: Synpcc7942_0816 - diguanylate cyclase/phosphodiesterase, at 810,181 to 812,226
_0816
Synpcc7942_0817: Synpcc7942_0817 - putative ferric uptake regulator, FUR family, at 812,331 to 812,723
_0817
Synpcc7942_0818: purS - phosphoribosylformylglycinamidine synthase subunit PurS, at 812,955 to 813,224
purS
Synpcc7942_0819: purL - phosphoribosylformylglycinamidine synthase subunit I, at 813,221 to 813,886
purL
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 809.353 kb on + strand at 809.360 kb on + strand at 809.372 kb on - strand at 809.382 kb on - strand at 809.477 kb on + strand, within livF at 809.502 kb on + strand, within livF at 809.547 kb on - strand, within livF at 809.567 kb on + strand, within livF at 809.572 kb on + strand, within livF at 809.575 kb on - strand, within livF at 809.588 kb on + strand, within livF at 809.607 kb on + strand, within livF at 809.659 kb on - strand, within livF at 809.675 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.729 kb on + strand, within livF at 809.737 kb on - strand, within livF at 809.737 kb on - strand, within livF at 809.774 kb on + strand, within livF at 809.779 kb on + strand, within livF at 809.805 kb on - strand, within livF at 809.864 kb on + strand, within livF at 809.893 kb on - strand, within livF at 809.925 kb on - strand, within livF at 809.925 kb on - strand, within livF at 809.952 kb on + strand, within livF at 809.969 kb on + strand, within livF at 809.973 kb on + strand, within livF at 810.032 kb on + strand at 810.040 kb on - strand at 810.071 kb on + strand at 810.074 kb on - strand at 810.077 kb on - strand at 810.092 kb on + strand at 810.097 kb on - strand at 810.224 kb on - strand at 810.240 kb on - strand at 810.309 kb on + strand at 810.409 kb on + strand, within Synpcc7942_0816 at 810.425 kb on + strand, within Synpcc7942_0816 at 810.463 kb on - strand, within Synpcc7942_0816 at 810.464 kb on - strand, within Synpcc7942_0816 at 810.583 kb on - strand, within Synpcc7942_0816 at 810.597 kb on - strand, within Synpcc7942_0816 at 810.613 kb on + strand, within Synpcc7942_0816 at 810.621 kb on - strand, within Synpcc7942_0816 at 810.661 kb on - strand, within Synpcc7942_0816 at 810.750 kb on - strand, within Synpcc7942_0816 at 810.885 kb on + strand, within Synpcc7942_0816 at 810.885 kb on + strand, within Synpcc7942_0816 at 810.886 kb on - strand, within Synpcc7942_0816 at 810.886 kb on - strand, within Synpcc7942_0816 at 810.893 kb on - strand, within Synpcc7942_0816 at 810.895 kb on + strand, within Synpcc7942_0816 at 810.937 kb on + strand, within Synpcc7942_0816 at 810.949 kb on + strand, within Synpcc7942_0816 at 810.949 kb on + strand, within Synpcc7942_0816 at 810.957 kb on - strand, within Synpcc7942_0816 at 810.957 kb on - strand, within Synpcc7942_0816 at 810.957 kb on - strand, within Synpcc7942_0816 at 810.979 kb on + strand, within Synpcc7942_0816 at 810.979 kb on + strand, within Synpcc7942_0816 at 810.999 kb on + strand, within Synpcc7942_0816 at 811.004 kb on + strand, within Synpcc7942_0816 at 811.007 kb on - strand, within Synpcc7942_0816 at 811.012 kb on - strand, within Synpcc7942_0816 at 811.012 kb on - strand, within Synpcc7942_0816 at 811.016 kb on + strand, within Synpcc7942_0816 at 811.085 kb on - strand, within Synpcc7942_0816 at 811.087 kb on + strand, within Synpcc7942_0816 at 811.095 kb on - strand, within Synpcc7942_0816 at 811.095 kb on - strand, within Synpcc7942_0816 at 811.095 kb on - strand, within Synpcc7942_0816 at 811.110 kb on + strand, within Synpcc7942_0816 at 811.118 kb on - strand, within Synpcc7942_0816 at 811.141 kb on - strand, within Synpcc7942_0816 at 811.189 kb on + strand, within Synpcc7942_0816 at 811.220 kb on - strand, within Synpcc7942_0816 at 811.254 kb on + strand, within Synpcc7942_0816 at 811.254 kb on + strand, within Synpcc7942_0816 at 811.257 kb on - strand, within Synpcc7942_0816 at 811.262 kb on - strand, within Synpcc7942_0816 at 811.262 kb on - strand, within Synpcc7942_0816 at 811.329 kb on - strand, within Synpcc7942_0816 at 811.361 kb on + strand, within Synpcc7942_0816 at 811.387 kb on - strand, within Synpcc7942_0816 at 811.397 kb on + strand at 811.421 kb on - strand at 811.440 kb on - strand, within Synpcc7942_0816 at 811.445 kb on - strand, within Synpcc7942_0816 at 811.622 kb on + strand, within Synpcc7942_0816 at 811.644 kb on - strand, within Synpcc7942_0816 at 811.650 kb on - strand, within Synpcc7942_0816 at 811.670 kb on + strand, within Synpcc7942_0816 at 811.702 kb on - strand, within Synpcc7942_0816 at 811.702 kb on - strand, within Synpcc7942_0816 at 811.702 kb on - strand, within Synpcc7942_0816 at 811.758 kb on - strand, within Synpcc7942_0816 at 811.865 kb on + strand, within Synpcc7942_0816 at 811.871 kb on + strand, within Synpcc7942_0816 at 811.873 kb on - strand, within Synpcc7942_0816 at 812.156 kb on + strand at 812.217 kb on - strand at 812.227 kb on + strand at 812.375 kb on + strand, within Synpcc7942_0817 at 812.383 kb on - strand, within Synpcc7942_0817 at 812.409 kb on + strand, within Synpcc7942_0817 at 812.420 kb on + strand, within Synpcc7942_0817 at 812.433 kb on + strand, within Synpcc7942_0817 at 812.433 kb on + strand, within Synpcc7942_0817 at 812.438 kb on + strand, within Synpcc7942_0817 at 812.441 kb on - strand, within Synpcc7942_0817 at 812.441 kb on - strand, within Synpcc7942_0817 at 812.473 kb on - strand, within Synpcc7942_0817 at 812.475 kb on - strand, within Synpcc7942_0817 at 812.508 kb on + strand, within Synpcc7942_0817 at 812.515 kb on + strand, within Synpcc7942_0817 at 812.515 kb on + strand, within Synpcc7942_0817 at 812.515 kb on + strand, within Synpcc7942_0817 at 812.523 kb on - strand, within Synpcc7942_0817 at 812.523 kb on - strand, within Synpcc7942_0817 at 812.523 kb on - strand, within Synpcc7942_0817 at 812.528 kb on - strand, within Synpcc7942_0817 at 812.558 kb on + strand, within Synpcc7942_0817 at 812.566 kb on - strand, within Synpcc7942_0817 at 812.568 kb on + strand, within Synpcc7942_0817 at 812.594 kb on - strand, within Synpcc7942_0817 at 812.605 kb on + strand, within Synpcc7942_0817 at 812.621 kb on - strand, within Synpcc7942_0817 at 812.621 kb on - strand, within Synpcc7942_0817 at 812.621 kb on - strand, within Synpcc7942_0817 at 812.638 kb on - strand, within Synpcc7942_0817 at 812.643 kb on - strand, within Synpcc7942_0817 at 812.645 kb on - strand, within Synpcc7942_0817 at 812.651 kb on - strand, within Synpcc7942_0817 at 812.661 kb on - strand, within Synpcc7942_0817 at 812.663 kb on + strand, within Synpcc7942_0817 at 812.673 kb on + strand, within Synpcc7942_0817 at 812.673 kb on + strand, within Synpcc7942_0817 at 812.681 kb on - strand, within Synpcc7942_0817 at 812.718 kb on + strand at 812.718 kb on + strand at 812.718 kb on + strand at 812.725 kb on + strand at 812.727 kb on - strand at 812.731 kb on + strand at 812.744 kb on + strand at 812.745 kb on + strand at 812.745 kb on + strand at 812.759 kb on - strand at 812.774 kb on - strand at 812.778 kb on + strand at 812.779 kb on + strand at 812.793 kb on - strand at 812.793 kb on - strand at 812.838 kb on + strand at 812.846 kb on + strand at 812.851 kb on + strand at 812.854 kb on - strand at 812.873 kb on - strand at 812.893 kb on + strand at 812.904 kb on - strand at 813.219 kb on - strand at 813.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 809,353 + +0.6 809,360 + -0.0 809,372 - -3.0 809,382 - -0.5 809,477 + livF Synpcc7942_0815 0.15 -0.5 809,502 + livF Synpcc7942_0815 0.19 +1.8 809,547 - livF Synpcc7942_0815 0.25 +0.6 809,567 + livF Synpcc7942_0815 0.28 +0.5 809,572 + livF Synpcc7942_0815 0.28 +0.6 809,575 - livF Synpcc7942_0815 0.29 -2.1 809,588 + livF Synpcc7942_0815 0.30 +0.2 809,607 + livF Synpcc7942_0815 0.33 +0.6 809,659 - livF Synpcc7942_0815 0.40 +0.4 809,675 + livF Synpcc7942_0815 0.42 -1.5 809,729 + livF Synpcc7942_0815 0.50 -1.3 809,729 + livF Synpcc7942_0815 0.50 -1.6 809,729 + livF Synpcc7942_0815 0.50 -1.5 809,729 + livF Synpcc7942_0815 0.50 +1.7 809,729 + livF Synpcc7942_0815 0.50 -1.2 809,729 + livF Synpcc7942_0815 0.50 +1.1 809,729 + livF Synpcc7942_0815 0.50 -1.8 809,737 - livF Synpcc7942_0815 0.51 +2.8 809,737 - livF Synpcc7942_0815 0.51 +1.2 809,774 + livF Synpcc7942_0815 0.56 +1.6 809,779 + livF Synpcc7942_0815 0.57 +2.3 809,805 - livF Synpcc7942_0815 0.60 -0.8 809,864 + livF Synpcc7942_0815 0.68 -1.5 809,893 - livF Synpcc7942_0815 0.72 -2.1 809,925 - livF Synpcc7942_0815 0.77 -2.0 809,925 - livF Synpcc7942_0815 0.77 -0.3 809,952 + livF Synpcc7942_0815 0.80 +1.6 809,969 + livF Synpcc7942_0815 0.83 +3.4 809,973 + livF Synpcc7942_0815 0.83 -1.9 810,032 + +2.0 810,040 - +2.5 810,071 + -0.4 810,074 - -2.6 810,077 - +0.5 810,092 + -1.5 810,097 - -2.1 810,224 - -3.7 810,240 - -2.1 810,309 + -2.6 810,409 + Synpcc7942_0816 0.11 -2.4 810,425 + Synpcc7942_0816 0.12 +0.4 810,463 - Synpcc7942_0816 0.14 -2.2 810,464 - Synpcc7942_0816 0.14 +2.0 810,583 - Synpcc7942_0816 0.20 +1.4 810,597 - Synpcc7942_0816 0.20 +1.5 810,613 + Synpcc7942_0816 0.21 +2.1 810,621 - Synpcc7942_0816 0.22 +0.8 810,661 - Synpcc7942_0816 0.23 -1.4 810,750 - Synpcc7942_0816 0.28 +2.2 810,885 + Synpcc7942_0816 0.34 +1.3 810,885 + Synpcc7942_0816 0.34 -0.5 810,886 - Synpcc7942_0816 0.34 +5.2 810,886 - Synpcc7942_0816 0.34 +1.2 810,893 - Synpcc7942_0816 0.35 +0.3 810,895 + Synpcc7942_0816 0.35 +2.1 810,937 + Synpcc7942_0816 0.37 -0.3 810,949 + Synpcc7942_0816 0.38 -2.2 810,949 + Synpcc7942_0816 0.38 -0.4 810,957 - Synpcc7942_0816 0.38 +1.2 810,957 - Synpcc7942_0816 0.38 -2.7 810,957 - Synpcc7942_0816 0.38 -1.6 810,979 + Synpcc7942_0816 0.39 -0.4 810,979 + Synpcc7942_0816 0.39 -2.2 810,999 + Synpcc7942_0816 0.40 -0.3 811,004 + Synpcc7942_0816 0.40 -0.9 811,007 - Synpcc7942_0816 0.40 +1.7 811,012 - Synpcc7942_0816 0.41 +3.7 811,012 - Synpcc7942_0816 0.41 +1.8 811,016 + Synpcc7942_0816 0.41 +0.4 811,085 - Synpcc7942_0816 0.44 +2.2 811,087 + Synpcc7942_0816 0.44 +1.8 811,095 - Synpcc7942_0816 0.45 +2.8 811,095 - Synpcc7942_0816 0.45 +1.1 811,095 - Synpcc7942_0816 0.45 -1.4 811,110 + Synpcc7942_0816 0.45 -1.5 811,118 - Synpcc7942_0816 0.46 +1.7 811,141 - Synpcc7942_0816 0.47 +0.5 811,189 + Synpcc7942_0816 0.49 -1.9 811,220 - Synpcc7942_0816 0.51 +7.0 811,254 + Synpcc7942_0816 0.52 +1.7 811,254 + Synpcc7942_0816 0.52 -0.8 811,257 - Synpcc7942_0816 0.53 -1.9 811,262 - Synpcc7942_0816 0.53 -0.1 811,262 - Synpcc7942_0816 0.53 -2.6 811,329 - Synpcc7942_0816 0.56 +0.8 811,361 + Synpcc7942_0816 0.58 -0.3 811,387 - Synpcc7942_0816 0.59 -1.7 811,397 + -1.2 811,421 - -0.0 811,440 - Synpcc7942_0816 0.62 -2.0 811,445 - Synpcc7942_0816 0.62 -2.3 811,622 + Synpcc7942_0816 0.70 -1.6 811,644 - Synpcc7942_0816 0.72 -2.1 811,650 - Synpcc7942_0816 0.72 -2.5 811,670 + Synpcc7942_0816 0.73 -1.2 811,702 - Synpcc7942_0816 0.74 +0.9 811,702 - Synpcc7942_0816 0.74 -2.5 811,702 - Synpcc7942_0816 0.74 +1.8 811,758 - Synpcc7942_0816 0.77 -2.3 811,865 + Synpcc7942_0816 0.82 +2.7 811,871 + Synpcc7942_0816 0.83 +1.6 811,873 - Synpcc7942_0816 0.83 -2.9 812,156 + +0.8 812,217 - -1.6 812,227 + +3.2 812,375 + Synpcc7942_0817 0.11 -3.2 812,383 - Synpcc7942_0817 0.13 -1.0 812,409 + Synpcc7942_0817 0.20 -1.5 812,420 + Synpcc7942_0817 0.23 -3.4 812,433 + Synpcc7942_0817 0.26 -1.7 812,433 + Synpcc7942_0817 0.26 -4.9 812,438 + Synpcc7942_0817 0.27 -1.9 812,441 - Synpcc7942_0817 0.28 -1.1 812,441 - Synpcc7942_0817 0.28 -4.0 812,473 - Synpcc7942_0817 0.36 -3.0 812,475 - Synpcc7942_0817 0.37 -3.1 812,508 + Synpcc7942_0817 0.45 -2.2 812,515 + Synpcc7942_0817 0.47 -1.6 812,515 + Synpcc7942_0817 0.47 -2.6 812,515 + Synpcc7942_0817 0.47 -1.3 812,523 - Synpcc7942_0817 0.49 -2.1 812,523 - Synpcc7942_0817 0.49 -2.6 812,523 - Synpcc7942_0817 0.49 -2.8 812,528 - Synpcc7942_0817 0.50 -1.1 812,558 + Synpcc7942_0817 0.58 -2.9 812,566 - Synpcc7942_0817 0.60 -3.5 812,568 + Synpcc7942_0817 0.60 -2.4 812,594 - Synpcc7942_0817 0.67 -3.0 812,605 + Synpcc7942_0817 0.70 -1.5 812,621 - Synpcc7942_0817 0.74 -1.4 812,621 - Synpcc7942_0817 0.74 -2.6 812,621 - Synpcc7942_0817 0.74 -1.8 812,638 - Synpcc7942_0817 0.78 -1.2 812,643 - Synpcc7942_0817 0.79 -2.7 812,645 - Synpcc7942_0817 0.80 -4.0 812,651 - Synpcc7942_0817 0.81 -2.1 812,661 - Synpcc7942_0817 0.84 -1.8 812,663 + Synpcc7942_0817 0.84 -3.9 812,673 + Synpcc7942_0817 0.87 -0.8 812,673 + Synpcc7942_0817 0.87 -1.0 812,681 - Synpcc7942_0817 0.89 -1.9 812,718 + -2.1 812,718 + +0.6 812,718 + +2.3 812,725 + -1.7 812,727 - -0.0 812,731 + -2.2 812,744 + -0.8 812,745 + -2.5 812,745 + -3.8 812,759 - +2.2 812,774 - -2.7 812,778 + +2.7 812,779 + -4.1 812,793 - -0.6 812,793 - +1.7 812,838 + -3.9 812,846 + -2.7 812,851 + -1.5 812,854 - -0.3 812,873 - -1.2 812,893 + +0.6 812,904 - -0.0 813,219 - +0.7 813,219 - -1.7
Or see this region's nucleotide sequence