Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0805 and Synpcc7942_0806 overlap by 1 nucleotides Synpcc7942_0806 and Synpcc7942_0807 are separated by 13 nucleotides Synpcc7942_0807 and sps are separated by 171 nucleotides
Synpcc7942_0805: Synpcc7942_0805 - hypothetical protein, at 798,349 to 799,095
_0805
Synpcc7942_0806: Synpcc7942_0806 - hypothetical protein, at 799,095 to 799,826
_0806
Synpcc7942_0807: Synpcc7942_0807 - hypothetical protein, at 799,840 to 800,679
_0807
Synpcc7942_0808: sps - HAD-superfamily hydrolase subfamily IIB, at 800,851 to 802,980
sps
Position (kb) 799
800
801 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 798.841 kb on + strand, within Synpcc7942_0805 at 798.889 kb on + strand, within Synpcc7942_0805 at 798.889 kb on + strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.897 kb on - strand, within Synpcc7942_0805 at 798.916 kb on + strand, within Synpcc7942_0805 at 798.965 kb on - strand, within Synpcc7942_0805 at 799.059 kb on - strand at 799.079 kb on - strand at 799.123 kb on - strand at 799.132 kb on + strand at 799.209 kb on + strand, within Synpcc7942_0806 at 799.219 kb on + strand, within Synpcc7942_0806 at 799.252 kb on - strand, within Synpcc7942_0806 at 799.257 kb on + strand, within Synpcc7942_0806 at 799.257 kb on + strand, within Synpcc7942_0806 at 799.265 kb on - strand, within Synpcc7942_0806 at 799.265 kb on - strand, within Synpcc7942_0806 at 799.285 kb on - strand, within Synpcc7942_0806 at 799.297 kb on + strand, within Synpcc7942_0806 at 799.302 kb on + strand, within Synpcc7942_0806 at 799.324 kb on + strand, within Synpcc7942_0806 at 799.324 kb on + strand, within Synpcc7942_0806 at 799.332 kb on - strand, within Synpcc7942_0806 at 799.334 kb on + strand, within Synpcc7942_0806 at 799.342 kb on - strand, within Synpcc7942_0806 at 799.344 kb on - strand, within Synpcc7942_0806 at 799.354 kb on - strand, within Synpcc7942_0806 at 799.354 kb on - strand, within Synpcc7942_0806 at 799.381 kb on + strand, within Synpcc7942_0806 at 799.399 kb on + strand, within Synpcc7942_0806 at 799.520 kb on + strand, within Synpcc7942_0806 at 799.540 kb on + strand, within Synpcc7942_0806 at 799.548 kb on - strand, within Synpcc7942_0806 at 799.548 kb on - strand, within Synpcc7942_0806 at 799.548 kb on - strand, within Synpcc7942_0806 at 799.562 kb on - strand, within Synpcc7942_0806 at 799.582 kb on + strand, within Synpcc7942_0806 at 799.582 kb on + strand, within Synpcc7942_0806 at 799.582 kb on + strand, within Synpcc7942_0806 at 799.658 kb on - strand, within Synpcc7942_0806 at 799.685 kb on + strand, within Synpcc7942_0806 at 799.687 kb on - strand, within Synpcc7942_0806 at 799.730 kb on + strand, within Synpcc7942_0806 at 799.742 kb on - strand, within Synpcc7942_0806 at 799.743 kb on - strand, within Synpcc7942_0806 at 799.768 kb on + strand at 799.787 kb on - strand at 799.794 kb on - strand at 799.798 kb on - strand at 799.823 kb on + strand at 799.857 kb on - strand at 799.900 kb on + strand at 799.910 kb on - strand at 799.910 kb on - strand at 799.927 kb on + strand, within Synpcc7942_0807 at 799.935 kb on - strand, within Synpcc7942_0807 at 799.945 kb on - strand, within Synpcc7942_0807 at 799.957 kb on + strand, within Synpcc7942_0807 at 799.957 kb on + strand, within Synpcc7942_0807 at 799.963 kb on - strand, within Synpcc7942_0807 at 800.012 kb on + strand, within Synpcc7942_0807 at 800.087 kb on - strand, within Synpcc7942_0807 at 800.126 kb on + strand at 800.133 kb on - strand, within Synpcc7942_0807 at 800.134 kb on - strand, within Synpcc7942_0807 at 800.141 kb on + strand, within Synpcc7942_0807 at 800.149 kb on - strand, within Synpcc7942_0807 at 800.177 kb on + strand, within Synpcc7942_0807 at 800.195 kb on + strand, within Synpcc7942_0807 at 800.195 kb on + strand, within Synpcc7942_0807 at 800.220 kb on + strand, within Synpcc7942_0807 at 800.229 kb on - strand, within Synpcc7942_0807 at 800.261 kb on + strand, within Synpcc7942_0807 at 800.268 kb on + strand, within Synpcc7942_0807 at 800.269 kb on + strand, within Synpcc7942_0807 at 800.291 kb on + strand, within Synpcc7942_0807 at 800.314 kb on + strand, within Synpcc7942_0807 at 800.316 kb on + strand, within Synpcc7942_0807 at 800.339 kb on - strand, within Synpcc7942_0807 at 800.350 kb on - strand, within Synpcc7942_0807 at 800.350 kb on - strand, within Synpcc7942_0807 at 800.372 kb on - strand, within Synpcc7942_0807 at 800.372 kb on - strand, within Synpcc7942_0807 at 800.372 kb on - strand, within Synpcc7942_0807 at 800.397 kb on + strand, within Synpcc7942_0807 at 800.405 kb on - strand, within Synpcc7942_0807 at 800.429 kb on + strand, within Synpcc7942_0807 at 800.594 kb on + strand, within Synpcc7942_0807 at 800.682 kb on + strand at 800.682 kb on - strand at 800.702 kb on + strand at 800.745 kb on + strand at 800.755 kb on + strand at 800.766 kb on - strand at 800.769 kb on - strand at 800.794 kb on - strand at 800.801 kb on - strand at 800.842 kb on - strand at 800.857 kb on - strand at 800.857 kb on - strand at 800.880 kb on + strand at 800.895 kb on - strand at 800.917 kb on - strand at 800.919 kb on + strand at 800.987 kb on - strand at 801.070 kb on + strand, within sps at 801.070 kb on + strand, within sps at 801.071 kb on + strand, within sps at 801.130 kb on + strand, within sps at 801.140 kb on + strand, within sps at 801.183 kb on + strand, within sps at 801.186 kb on - strand, within sps at 801.196 kb on + strand, within sps at 801.198 kb on + strand, within sps at 801.206 kb on - strand at 801.245 kb on + strand, within sps at 801.285 kb on - strand, within sps at 801.367 kb on - strand at 801.415 kb on + strand, within sps at 801.447 kb on - strand, within sps at 801.457 kb on - strand, within sps at 801.501 kb on + strand, within sps at 801.559 kb on - strand, within sps at 801.597 kb on - strand, within sps at 801.656 kb on + strand, within sps
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 798,841 + Synpcc7942_0805 0.66 +2.6 798,889 + Synpcc7942_0805 0.72 +3.9 798,889 + Synpcc7942_0805 0.72 +1.5 798,897 - Synpcc7942_0805 0.73 +1.8 798,897 - Synpcc7942_0805 0.73 +1.1 798,897 - Synpcc7942_0805 0.73 -0.1 798,897 - Synpcc7942_0805 0.73 -0.7 798,916 + Synpcc7942_0805 0.76 +1.5 798,965 - Synpcc7942_0805 0.82 +0.1 799,059 - +0.0 799,079 - -1.4 799,123 - +0.3 799,132 + +2.1 799,209 + Synpcc7942_0806 0.16 +3.3 799,219 + Synpcc7942_0806 0.17 +2.9 799,252 - Synpcc7942_0806 0.21 +0.8 799,257 + Synpcc7942_0806 0.22 +1.9 799,257 + Synpcc7942_0806 0.22 -0.2 799,265 - Synpcc7942_0806 0.23 +3.7 799,265 - Synpcc7942_0806 0.23 +3.4 799,285 - Synpcc7942_0806 0.26 +3.3 799,297 + Synpcc7942_0806 0.28 +2.5 799,302 + Synpcc7942_0806 0.28 +3.4 799,324 + Synpcc7942_0806 0.31 +3.3 799,324 + Synpcc7942_0806 0.31 +4.2 799,332 - Synpcc7942_0806 0.32 +2.5 799,334 + Synpcc7942_0806 0.33 -0.4 799,342 - Synpcc7942_0806 0.34 -0.0 799,344 - Synpcc7942_0806 0.34 -3.0 799,354 - Synpcc7942_0806 0.35 -1.0 799,354 - Synpcc7942_0806 0.35 +1.8 799,381 + Synpcc7942_0806 0.39 +2.7 799,399 + Synpcc7942_0806 0.42 +0.8 799,520 + Synpcc7942_0806 0.58 +0.1 799,540 + Synpcc7942_0806 0.61 -0.7 799,548 - Synpcc7942_0806 0.62 +1.4 799,548 - Synpcc7942_0806 0.62 -0.4 799,548 - Synpcc7942_0806 0.62 +1.6 799,562 - Synpcc7942_0806 0.64 -0.1 799,582 + Synpcc7942_0806 0.67 +1.6 799,582 + Synpcc7942_0806 0.67 -0.2 799,582 + Synpcc7942_0806 0.67 +4.6 799,658 - Synpcc7942_0806 0.77 +2.8 799,685 + Synpcc7942_0806 0.81 +3.1 799,687 - Synpcc7942_0806 0.81 -0.6 799,730 + Synpcc7942_0806 0.87 +5.8 799,742 - Synpcc7942_0806 0.88 +3.5 799,743 - Synpcc7942_0806 0.89 -2.1 799,768 + +2.2 799,787 - +0.6 799,794 - +3.8 799,798 - +0.3 799,823 + -3.6 799,857 - +0.4 799,900 + -0.5 799,910 - +1.7 799,910 - -2.5 799,927 + Synpcc7942_0807 0.10 -2.1 799,935 - Synpcc7942_0807 0.11 -0.7 799,945 - Synpcc7942_0807 0.12 +2.0 799,957 + Synpcc7942_0807 0.14 -1.8 799,957 + Synpcc7942_0807 0.14 -1.7 799,963 - Synpcc7942_0807 0.15 -1.6 800,012 + Synpcc7942_0807 0.20 +0.3 800,087 - Synpcc7942_0807 0.29 -1.5 800,126 + +1.0 800,133 - Synpcc7942_0807 0.35 +2.6 800,134 - Synpcc7942_0807 0.35 -0.7 800,141 + Synpcc7942_0807 0.36 -1.3 800,149 - Synpcc7942_0807 0.37 -1.0 800,177 + Synpcc7942_0807 0.40 +3.3 800,195 + Synpcc7942_0807 0.42 -1.7 800,195 + Synpcc7942_0807 0.42 -0.1 800,220 + Synpcc7942_0807 0.45 +0.5 800,229 - Synpcc7942_0807 0.46 +0.4 800,261 + Synpcc7942_0807 0.50 +1.5 800,268 + Synpcc7942_0807 0.51 +1.1 800,269 + Synpcc7942_0807 0.51 -2.5 800,291 + Synpcc7942_0807 0.54 +1.1 800,314 + Synpcc7942_0807 0.56 -1.3 800,316 + Synpcc7942_0807 0.57 +0.6 800,339 - Synpcc7942_0807 0.59 -1.4 800,350 - Synpcc7942_0807 0.61 +0.3 800,350 - Synpcc7942_0807 0.61 -2.5 800,372 - Synpcc7942_0807 0.63 -1.1 800,372 - Synpcc7942_0807 0.63 -2.4 800,372 - Synpcc7942_0807 0.63 -0.6 800,397 + Synpcc7942_0807 0.66 -0.7 800,405 - Synpcc7942_0807 0.67 -0.5 800,429 + Synpcc7942_0807 0.70 +0.6 800,594 + Synpcc7942_0807 0.90 -0.3 800,682 + -0.4 800,682 - -0.2 800,702 + +0.6 800,745 + +1.9 800,755 + +1.2 800,766 - -1.0 800,769 - -3.4 800,794 - +1.0 800,801 - +0.9 800,842 - +2.3 800,857 - -0.3 800,857 - -0.9 800,880 + -3.4 800,895 - +3.2 800,917 - -3.8 800,919 + -3.1 800,987 - -0.8 801,070 + sps Synpcc7942_0808 0.10 -2.2 801,070 + sps Synpcc7942_0808 0.10 -3.4 801,071 + sps Synpcc7942_0808 0.10 -0.6 801,130 + sps Synpcc7942_0808 0.13 -0.9 801,140 + sps Synpcc7942_0808 0.14 -2.7 801,183 + sps Synpcc7942_0808 0.16 -3.2 801,186 - sps Synpcc7942_0808 0.16 -1.0 801,196 + sps Synpcc7942_0808 0.16 -2.2 801,198 + sps Synpcc7942_0808 0.16 -2.0 801,206 - -1.2 801,245 + sps Synpcc7942_0808 0.18 -2.1 801,285 - sps Synpcc7942_0808 0.20 -1.7 801,367 - -2.1 801,415 + sps Synpcc7942_0808 0.26 -2.2 801,447 - sps Synpcc7942_0808 0.28 -2.6 801,457 - sps Synpcc7942_0808 0.28 -1.6 801,501 + sps Synpcc7942_0808 0.31 -2.8 801,559 - sps Synpcc7942_0808 0.33 -2.2 801,597 - sps Synpcc7942_0808 0.35 -3.0 801,656 + sps Synpcc7942_0808 0.38 +0.9
Or see this region's nucleotide sequence