Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sodB and Synpcc7942_0802 are separated by 104 nucleotides Synpcc7942_0802 and Synpcc7942_0803 are separated by 2 nucleotides Synpcc7942_0803 and pdxA overlap by 2 nucleotides
Synpcc7942_0801: sodB - Superoxide dismutase, at 795,123 to 795,812
sodB
Synpcc7942_0802: Synpcc7942_0802 - allophycocyanin alpha chain-like, at 795,917 to 796,504
_0802
Synpcc7942_0803: Synpcc7942_0803 - hypothetical protein, at 796,507 to 797,289
_0803
Synpcc7942_0804: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase, at 797,288 to 798,349
pdxA
Position (kb) 796
797
798 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 795.788 kb on + strand at 795.808 kb on + strand at 795.825 kb on - strand at 795.830 kb on - strand at 795.840 kb on - strand at 795.846 kb on + strand at 795.887 kb on - strand at 795.887 kb on - strand at 795.944 kb on + strand at 795.952 kb on - strand at 795.980 kb on + strand, within Synpcc7942_0802 at 796.014 kb on - strand, within Synpcc7942_0802 at 796.015 kb on + strand, within Synpcc7942_0802 at 796.087 kb on + strand, within Synpcc7942_0802 at 796.087 kb on + strand, within Synpcc7942_0802 at 796.095 kb on - strand, within Synpcc7942_0802 at 796.163 kb on - strand, within Synpcc7942_0802 at 796.195 kb on + strand, within Synpcc7942_0802 at 796.195 kb on + strand, within Synpcc7942_0802 at 796.195 kb on + strand, within Synpcc7942_0802 at 796.204 kb on + strand, within Synpcc7942_0802 at 796.204 kb on + strand, within Synpcc7942_0802 at 796.204 kb on + strand, within Synpcc7942_0802 at 796.207 kb on + strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.212 kb on - strand, within Synpcc7942_0802 at 796.242 kb on + strand, within Synpcc7942_0802 at 796.263 kb on + strand, within Synpcc7942_0802 at 796.283 kb on - strand, within Synpcc7942_0802 at 796.300 kb on + strand, within Synpcc7942_0802 at 796.308 kb on - strand, within Synpcc7942_0802 at 796.323 kb on - strand, within Synpcc7942_0802 at 796.343 kb on + strand, within Synpcc7942_0802 at 796.343 kb on + strand, within Synpcc7942_0802 at 796.387 kb on - strand, within Synpcc7942_0802 at 796.444 kb on - strand, within Synpcc7942_0802 at 796.444 kb on - strand, within Synpcc7942_0802 at 796.446 kb on + strand at 796.465 kb on - strand at 796.478 kb on + strand at 796.486 kb on - strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.488 kb on + strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.496 kb on - strand at 796.511 kb on - strand at 796.522 kb on + strand at 796.523 kb on + strand at 796.523 kb on + strand at 796.525 kb on + strand at 796.525 kb on - strand at 796.529 kb on - strand at 796.531 kb on - strand at 796.562 kb on + strand at 796.582 kb on + strand at 796.585 kb on - strand at 796.683 kb on - strand, within Synpcc7942_0803 at 796.727 kb on + strand, within Synpcc7942_0803 at 796.741 kb on + strand, within Synpcc7942_0803 at 796.784 kb on - strand, within Synpcc7942_0803 at 796.784 kb on - strand at 796.794 kb on - strand, within Synpcc7942_0803 at 796.810 kb on + strand, within Synpcc7942_0803 at 796.821 kb on - strand, within Synpcc7942_0803 at 796.835 kb on - strand, within Synpcc7942_0803 at 796.836 kb on - strand, within Synpcc7942_0803 at 796.837 kb on - strand, within Synpcc7942_0803 at 796.876 kb on + strand, within Synpcc7942_0803 at 796.890 kb on - strand, within Synpcc7942_0803 at 796.901 kb on + strand, within Synpcc7942_0803 at 796.918 kb on - strand, within Synpcc7942_0803 at 796.949 kb on - strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.982 kb on + strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 796.990 kb on - strand, within Synpcc7942_0803 at 797.007 kb on - strand, within Synpcc7942_0803 at 797.019 kb on - strand, within Synpcc7942_0803 at 797.019 kb on - strand, within Synpcc7942_0803 at 797.045 kb on + strand, within Synpcc7942_0803 at 797.053 kb on + strand, within Synpcc7942_0803 at 797.053 kb on - strand, within Synpcc7942_0803 at 797.077 kb on - strand, within Synpcc7942_0803 at 797.097 kb on - strand, within Synpcc7942_0803 at 797.105 kb on + strand, within Synpcc7942_0803 at 797.111 kb on - strand, within Synpcc7942_0803 at 797.114 kb on - strand, within Synpcc7942_0803 at 797.117 kb on + strand, within Synpcc7942_0803 at 797.119 kb on - strand, within Synpcc7942_0803 at 797.123 kb on + strand, within Synpcc7942_0803 at 797.158 kb on - strand, within Synpcc7942_0803 at 797.163 kb on + strand, within Synpcc7942_0803 at 797.252 kb on + strand at 797.252 kb on + strand at 797.260 kb on - strand at 797.260 kb on - strand at 797.260 kb on - strand at 797.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 795,788 + -1.0 795,808 + -1.5 795,825 - -2.8 795,830 - -0.3 795,840 - -0.6 795,846 + -3.6 795,887 - -0.1 795,887 - -1.6 795,944 + +2.8 795,952 - +0.8 795,980 + Synpcc7942_0802 0.11 +2.9 796,014 - Synpcc7942_0802 0.16 -0.0 796,015 + Synpcc7942_0802 0.17 +1.9 796,087 + Synpcc7942_0802 0.29 +3.2 796,087 + Synpcc7942_0802 0.29 +1.8 796,095 - Synpcc7942_0802 0.30 -0.7 796,163 - Synpcc7942_0802 0.42 +0.2 796,195 + Synpcc7942_0802 0.47 +0.4 796,195 + Synpcc7942_0802 0.47 +3.6 796,195 + Synpcc7942_0802 0.47 +1.2 796,204 + Synpcc7942_0802 0.49 +0.1 796,204 + Synpcc7942_0802 0.49 +2.0 796,204 + Synpcc7942_0802 0.49 +1.8 796,207 + Synpcc7942_0802 0.49 +3.7 796,212 - Synpcc7942_0802 0.50 -1.1 796,212 - Synpcc7942_0802 0.50 +1.4 796,212 - Synpcc7942_0802 0.50 +1.8 796,212 - Synpcc7942_0802 0.50 +1.6 796,212 - Synpcc7942_0802 0.50 -1.9 796,212 - Synpcc7942_0802 0.50 -1.6 796,242 + Synpcc7942_0802 0.55 -1.1 796,263 + Synpcc7942_0802 0.59 +1.8 796,283 - Synpcc7942_0802 0.62 +3.0 796,300 + Synpcc7942_0802 0.65 +5.5 796,308 - Synpcc7942_0802 0.66 -1.4 796,323 - Synpcc7942_0802 0.69 -0.7 796,343 + Synpcc7942_0802 0.72 +3.1 796,343 + Synpcc7942_0802 0.72 +3.4 796,387 - Synpcc7942_0802 0.80 -1.5 796,444 - Synpcc7942_0802 0.90 +1.3 796,444 - Synpcc7942_0802 0.90 +1.0 796,446 + +2.6 796,465 - -1.8 796,478 + +2.0 796,486 - +1.7 796,488 + -0.0 796,488 + +1.9 796,488 + +1.2 796,488 + -2.0 796,488 + +0.5 796,488 + -2.7 796,496 - -0.9 796,496 - +0.4 796,496 - -1.6 796,496 - -1.3 796,496 - -2.8 796,496 - +2.5 796,496 - -3.3 796,511 - -4.5 796,522 + -3.2 796,523 + -2.7 796,523 + -2.2 796,525 + -1.2 796,525 - +2.0 796,529 - +0.2 796,531 - +1.2 796,562 + -1.8 796,582 + -0.6 796,585 - -1.8 796,683 - Synpcc7942_0803 0.22 +0.2 796,727 + Synpcc7942_0803 0.28 -0.0 796,741 + Synpcc7942_0803 0.30 -2.9 796,784 - Synpcc7942_0803 0.35 -1.7 796,784 - -0.7 796,794 - Synpcc7942_0803 0.37 +0.6 796,810 + Synpcc7942_0803 0.39 -2.2 796,821 - Synpcc7942_0803 0.40 -0.6 796,835 - Synpcc7942_0803 0.42 +0.2 796,836 - Synpcc7942_0803 0.42 +0.5 796,837 - Synpcc7942_0803 0.42 -2.8 796,876 + Synpcc7942_0803 0.47 -2.2 796,890 - Synpcc7942_0803 0.49 +0.3 796,901 + Synpcc7942_0803 0.50 +0.3 796,918 - Synpcc7942_0803 0.52 -1.0 796,949 - Synpcc7942_0803 0.56 +1.1 796,982 + Synpcc7942_0803 0.61 -0.8 796,982 + Synpcc7942_0803 0.61 +0.8 796,982 + Synpcc7942_0803 0.61 -0.8 796,982 + Synpcc7942_0803 0.61 -0.9 796,982 + Synpcc7942_0803 0.61 -0.6 796,990 - Synpcc7942_0803 0.62 +0.4 796,990 - Synpcc7942_0803 0.62 -2.3 796,990 - Synpcc7942_0803 0.62 -0.4 796,990 - Synpcc7942_0803 0.62 -1.3 796,990 - Synpcc7942_0803 0.62 -0.3 797,007 - Synpcc7942_0803 0.64 -2.6 797,019 - Synpcc7942_0803 0.65 -2.1 797,019 - Synpcc7942_0803 0.65 -1.6 797,045 + Synpcc7942_0803 0.69 -1.6 797,053 + Synpcc7942_0803 0.70 +3.7 797,053 - Synpcc7942_0803 0.70 -2.9 797,077 - Synpcc7942_0803 0.73 -1.5 797,097 - Synpcc7942_0803 0.75 -2.4 797,105 + Synpcc7942_0803 0.76 -1.4 797,111 - Synpcc7942_0803 0.77 -0.2 797,114 - Synpcc7942_0803 0.78 -2.3 797,117 + Synpcc7942_0803 0.78 -1.2 797,119 - Synpcc7942_0803 0.78 -1.5 797,123 + Synpcc7942_0803 0.79 +0.1 797,158 - Synpcc7942_0803 0.83 -1.9 797,163 + Synpcc7942_0803 0.84 -2.0 797,252 + -3.3 797,252 + -3.3 797,260 - +0.1 797,260 - -2.5 797,260 - -0.6 797,318 - +2.3
Or see this region's nucleotide sequence