Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0794 and Synpcc7942_0795 are separated by 202 nucleotides Synpcc7942_0795 and Synpcc7942_0796 are separated by 127 nucleotides Synpcc7942_0796 and Synpcc7942_0797 are separated by 289 nucleotides
Synpcc7942_0794: Synpcc7942_0794 - membrane-associated 30 kD protein-like, at 789,460 to 790,233
_0794
Synpcc7942_0795: Synpcc7942_0795 - hypothetical protein, at 790,436 to 791,047
_0795
Synpcc7942_0796: Synpcc7942_0796 - hypothetical protein, at 791,175 to 791,720
_0796
Synpcc7942_0797: Synpcc7942_0797 - hypothetical protein, at 792,010 to 792,270
_0797
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 789.457 kb on + strand at 789.457 kb on + strand at 789.457 kb on + strand at 789.465 kb on - strand at 789.465 kb on - strand at 789.465 kb on - strand at 789.465 kb on - strand at 789.503 kb on - strand at 789.517 kb on - strand at 789.553 kb on - strand, within Synpcc7942_0794 at 790.363 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.364 kb on + strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.372 kb on - strand at 790.407 kb on + strand at 790.424 kb on - strand at 790.429 kb on + strand at 790.441 kb on - strand at 790.446 kb on + strand at 790.446 kb on + strand at 790.446 kb on + strand at 790.446 kb on + strand at 790.446 kb on + strand at 790.454 kb on - strand at 790.454 kb on - strand at 790.454 kb on - strand at 790.454 kb on - strand at 790.458 kb on + strand at 790.469 kb on - strand at 790.469 kb on - strand at 790.524 kb on + strand, within Synpcc7942_0795 at 790.529 kb on + strand, within Synpcc7942_0795 at 790.542 kb on - strand, within Synpcc7942_0795 at 790.567 kb on - strand, within Synpcc7942_0795 at 790.586 kb on + strand, within Synpcc7942_0795 at 790.591 kb on + strand, within Synpcc7942_0795 at 790.593 kb on - strand, within Synpcc7942_0795 at 790.593 kb on - strand, within Synpcc7942_0795 at 790.593 kb on - strand, within Synpcc7942_0795 at 790.594 kb on - strand, within Synpcc7942_0795 at 790.599 kb on - strand, within Synpcc7942_0795 at 790.604 kb on - strand, within Synpcc7942_0795 at 790.623 kb on - strand, within Synpcc7942_0795 at 790.693 kb on + strand, within Synpcc7942_0795 at 790.693 kb on + strand, within Synpcc7942_0795 at 790.693 kb on + strand, within Synpcc7942_0795 at 790.701 kb on - strand, within Synpcc7942_0795 at 790.701 kb on - strand, within Synpcc7942_0795 at 790.709 kb on + strand, within Synpcc7942_0795 at 790.720 kb on + strand, within Synpcc7942_0795 at 790.749 kb on + strand, within Synpcc7942_0795 at 790.757 kb on - strand, within Synpcc7942_0795 at 790.774 kb on - strand, within Synpcc7942_0795 at 790.774 kb on - strand, within Synpcc7942_0795 at 790.784 kb on + strand, within Synpcc7942_0795 at 790.784 kb on + strand, within Synpcc7942_0795 at 790.784 kb on + strand, within Synpcc7942_0795 at 790.789 kb on + strand, within Synpcc7942_0795 at 790.789 kb on + strand, within Synpcc7942_0795 at 790.789 kb on + strand, within Synpcc7942_0795 at 790.789 kb on + strand, within Synpcc7942_0795 at 790.792 kb on - strand, within Synpcc7942_0795 at 790.792 kb on - strand, within Synpcc7942_0795 at 790.797 kb on - strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.812 kb on + strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.820 kb on - strand, within Synpcc7942_0795 at 790.822 kb on - strand, within Synpcc7942_0795 at 790.851 kb on - strand, within Synpcc7942_0795 at 790.853 kb on + strand, within Synpcc7942_0795 at 790.897 kb on - strand, within Synpcc7942_0795 at 790.942 kb on - strand, within Synpcc7942_0795 at 790.970 kb on + strand, within Synpcc7942_0795 at 790.978 kb on + strand, within Synpcc7942_0795 at 790.978 kb on + strand, within Synpcc7942_0795 at 790.986 kb on - strand at 790.997 kb on - strand at 791.011 kb on + strand at 791.019 kb on - strand at 791.050 kb on + strand at 791.050 kb on + strand at 791.050 kb on + strand at 791.050 kb on + strand at 791.058 kb on - strand at 791.058 kb on - strand at 791.060 kb on + strand at 791.060 kb on + strand at 791.073 kb on + strand at 791.081 kb on - strand at 791.130 kb on + strand at 791.167 kb on - strand at 791.167 kb on - strand at 791.175 kb on + strand at 791.747 kb on + strand at 791.755 kb on - strand at 791.822 kb on - strand at 791.933 kb on - strand at 791.933 kb on - strand at 792.023 kb on + strand at 792.036 kb on - strand, within Synpcc7942_0797 at 792.044 kb on + strand, within Synpcc7942_0797 at 792.044 kb on + strand, within Synpcc7942_0797 at 792.044 kb on - strand, within Synpcc7942_0797
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 789,457 + +0.4 789,457 + +1.9 789,457 + +1.6 789,465 - +0.1 789,465 - +4.2 789,465 - +0.0 789,465 - +0.5 789,503 - -1.7 789,517 - -0.0 789,553 - Synpcc7942_0794 0.12 +0.5 790,363 + +3.4 790,364 + -0.1 790,364 + -0.2 790,364 + +1.1 790,364 + +2.2 790,364 + +1.1 790,364 + -2.1 790,364 + -2.2 790,364 + -1.5 790,364 + -1.0 790,364 + -1.7 790,364 + -0.4 790,364 + -0.8 790,364 + +1.0 790,364 + -1.5 790,364 + +0.5 790,364 + +0.2 790,364 + -1.6 790,364 + -2.6 790,364 + -3.4 790,364 + -0.5 790,364 + -1.4 790,364 + +1.8 790,372 - -1.0 790,372 - -0.0 790,372 - -3.0 790,372 - -1.7 790,372 - +2.6 790,372 - -0.5 790,372 - -1.6 790,372 - -1.6 790,372 - +1.3 790,372 - +0.1 790,372 - -0.7 790,372 - +0.7 790,372 - -0.4 790,372 - -0.6 790,372 - +1.7 790,372 - +0.3 790,372 - +2.2 790,372 - +0.5 790,372 - -1.0 790,407 + -1.5 790,424 - -0.7 790,429 + +1.3 790,441 - -1.6 790,446 + +0.1 790,446 + +0.9 790,446 + -0.6 790,446 + +3.7 790,446 + +1.2 790,454 - -0.6 790,454 - +0.7 790,454 - -2.0 790,454 - -0.4 790,458 + +1.4 790,469 - -1.2 790,469 - +2.6 790,524 + Synpcc7942_0795 0.14 -0.3 790,529 + Synpcc7942_0795 0.15 +1.3 790,542 - Synpcc7942_0795 0.17 +3.0 790,567 - Synpcc7942_0795 0.21 +1.6 790,586 + Synpcc7942_0795 0.25 +1.1 790,591 + Synpcc7942_0795 0.25 +3.1 790,593 - Synpcc7942_0795 0.26 +2.8 790,593 - Synpcc7942_0795 0.26 +1.1 790,593 - Synpcc7942_0795 0.26 +2.1 790,594 - Synpcc7942_0795 0.26 +2.4 790,599 - Synpcc7942_0795 0.27 +3.1 790,604 - Synpcc7942_0795 0.27 +0.8 790,623 - Synpcc7942_0795 0.31 +2.4 790,693 + Synpcc7942_0795 0.42 +5.7 790,693 + Synpcc7942_0795 0.42 +2.7 790,693 + Synpcc7942_0795 0.42 +2.0 790,701 - Synpcc7942_0795 0.43 +2.9 790,701 - Synpcc7942_0795 0.43 +2.9 790,709 + Synpcc7942_0795 0.45 +0.9 790,720 + Synpcc7942_0795 0.46 -0.6 790,749 + Synpcc7942_0795 0.51 +3.7 790,757 - Synpcc7942_0795 0.52 +0.6 790,774 - Synpcc7942_0795 0.55 +0.3 790,774 - Synpcc7942_0795 0.55 +3.4 790,784 + Synpcc7942_0795 0.57 +2.5 790,784 + Synpcc7942_0795 0.57 +1.8 790,784 + Synpcc7942_0795 0.57 +0.3 790,789 + Synpcc7942_0795 0.58 +1.7 790,789 + Synpcc7942_0795 0.58 +3.5 790,789 + Synpcc7942_0795 0.58 +2.7 790,789 + Synpcc7942_0795 0.58 +0.7 790,792 - Synpcc7942_0795 0.58 +4.6 790,792 - Synpcc7942_0795 0.58 +2.1 790,797 - Synpcc7942_0795 0.59 +4.8 790,812 + Synpcc7942_0795 0.61 +1.0 790,812 + Synpcc7942_0795 0.61 +2.0 790,812 + Synpcc7942_0795 0.61 +3.4 790,812 + Synpcc7942_0795 0.61 +0.6 790,812 + Synpcc7942_0795 0.61 +3.4 790,812 + Synpcc7942_0795 0.61 +2.1 790,812 + Synpcc7942_0795 0.61 +2.0 790,812 + Synpcc7942_0795 0.61 +3.8 790,812 + Synpcc7942_0795 0.61 -0.4 790,812 + Synpcc7942_0795 0.61 -1.7 790,812 + Synpcc7942_0795 0.61 +1.2 790,812 + Synpcc7942_0795 0.61 +3.0 790,812 + Synpcc7942_0795 0.61 +1.4 790,812 + Synpcc7942_0795 0.61 +5.5 790,812 + Synpcc7942_0795 0.61 +2.8 790,812 + +5.1 790,812 + Synpcc7942_0795 0.61 +4.4 790,812 + Synpcc7942_0795 0.61 +3.3 790,812 + Synpcc7942_0795 0.61 +2.8 790,812 + Synpcc7942_0795 0.61 +2.9 790,812 + Synpcc7942_0795 0.61 +5.8 790,812 + Synpcc7942_0795 0.61 -1.0 790,812 + Synpcc7942_0795 0.61 +4.4 790,820 - Synpcc7942_0795 0.63 +2.6 790,820 - Synpcc7942_0795 0.63 +2.7 790,820 - Synpcc7942_0795 0.63 +1.3 790,820 - Synpcc7942_0795 0.63 +5.2 790,820 - Synpcc7942_0795 0.63 -1.5 790,820 - Synpcc7942_0795 0.63 +7.1 790,820 - Synpcc7942_0795 0.63 -0.7 790,820 - Synpcc7942_0795 0.63 +3.8 790,820 - Synpcc7942_0795 0.63 +3.6 790,820 - Synpcc7942_0795 0.63 +3.8 790,820 - Synpcc7942_0795 0.63 +2.0 790,820 - Synpcc7942_0795 0.63 +3.4 790,820 - Synpcc7942_0795 0.63 -1.6 790,820 - Synpcc7942_0795 0.63 +3.2 790,822 - Synpcc7942_0795 0.63 +2.1 790,851 - Synpcc7942_0795 0.68 -0.6 790,853 + Synpcc7942_0795 0.68 +4.6 790,897 - Synpcc7942_0795 0.75 +2.1 790,942 - Synpcc7942_0795 0.83 +0.6 790,970 + Synpcc7942_0795 0.87 +3.1 790,978 + Synpcc7942_0795 0.89 +1.9 790,978 + Synpcc7942_0795 0.89 +1.1 790,986 - +4.8 790,997 - +3.2 791,011 + +2.2 791,019 - +2.3 791,050 + -0.9 791,050 + -1.5 791,050 + -1.4 791,050 + -1.5 791,058 - -1.8 791,058 - +3.1 791,060 + -1.4 791,060 + -2.8 791,073 + +0.3 791,081 - +2.5 791,130 + +1.3 791,167 - +0.1 791,167 - +2.5 791,175 + -0.7 791,747 + -2.1 791,755 - -1.9 791,822 - +1.5 791,933 - -2.7 791,933 - -1.0 792,023 + +1.1 792,036 - Synpcc7942_0797 0.10 +1.3 792,044 + Synpcc7942_0797 0.13 +0.9 792,044 + Synpcc7942_0797 0.13 +1.8 792,044 - Synpcc7942_0797 0.13 -1.1
Or see this region's nucleotide sequence