Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0772 and ycf52 are separated by 14 nucleotides ycf52 and Synpcc7942_0774 are separated by 18 nucleotides Synpcc7942_0774 and Synpcc7942_0775 are separated by 138 nucleotides Synpcc7942_0775 and crtE overlap by 1 nucleotides
Synpcc7942_0772: Synpcc7942_0772 - hypothetical protein, at 764,984 to 765,577
_0772
Synpcc7942_0773: ycf52 - conserved hypothetical protein YCF52, at 765,592 to 766,197
ycf52
Synpcc7942_0774: Synpcc7942_0774 - esterase, at 766,216 to 767,103
_0774
Synpcc7942_0775: Synpcc7942_0775 - hypothetical protein, at 767,242 to 767,721
_0775
Synpcc7942_0776: crtE - farnesyl-diphosphate synthase, at 767,721 to 768,626
crtE
Position (kb) 766
767
768 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 765.295 kb on + strand, within Synpcc7942_0772 at 765.308 kb on - strand, within Synpcc7942_0772 at 765.310 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.355 kb on - strand, within Synpcc7942_0772 at 765.377 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.414 kb on + strand, within Synpcc7942_0772 at 765.420 kb on - strand, within Synpcc7942_0772 at 765.422 kb on - strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.435 kb on + strand, within Synpcc7942_0772 at 765.436 kb on + strand, within Synpcc7942_0772 at 765.456 kb on + strand, within Synpcc7942_0772 at 765.464 kb on - strand, within Synpcc7942_0772 at 765.521 kb on + strand at 765.523 kb on - strand at 765.535 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.547 kb on + strand at 765.550 kb on - strand at 765.550 kb on - strand at 765.552 kb on + strand at 765.553 kb on - strand at 765.579 kb on - strand at 765.581 kb on - strand at 765.687 kb on + strand, within ycf52 at 765.701 kb on + strand, within ycf52 at 765.748 kb on + strand, within ycf52 at 765.762 kb on - strand, within ycf52 at 765.786 kb on - strand, within ycf52 at 765.813 kb on + strand, within ycf52 at 765.850 kb on + strand, within ycf52 at 765.856 kb on + strand, within ycf52 at 765.919 kb on + strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 766.014 kb on - strand, within ycf52 at 766.048 kb on - strand, within ycf52 at 766.085 kb on - strand, within ycf52 at 766.092 kb on - strand, within ycf52 at 766.100 kb on + strand, within ycf52 at 766.101 kb on - strand, within ycf52 at 766.113 kb on - strand, within ycf52 at 766.143 kb on - strand at 766.154 kb on + strand at 766.154 kb on + strand at 766.162 kb on - strand at 766.182 kb on - strand at 766.186 kb on - strand at 766.221 kb on - strand at 766.248 kb on - strand at 766.250 kb on + strand at 766.258 kb on - strand at 766.272 kb on - strand at 766.310 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.339 kb on + strand, within Synpcc7942_0774 at 766.354 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.415 kb on + strand, within Synpcc7942_0774 at 766.418 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.436 kb on - strand, within Synpcc7942_0774 at 766.473 kb on - strand, within Synpcc7942_0774 at 766.482 kb on - strand, within Synpcc7942_0774 at 766.509 kb on + strand, within Synpcc7942_0774 at 766.523 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.540 kb on + strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.585 kb on - strand, within Synpcc7942_0774 at 766.604 kb on - strand at 766.631 kb on + strand, within Synpcc7942_0774 at 766.803 kb on + strand, within Synpcc7942_0774 at 766.806 kb on - strand, within Synpcc7942_0774 at 766.824 kb on + strand, within Synpcc7942_0774 at 766.903 kb on - strand at 766.921 kb on + strand, within Synpcc7942_0774 at 766.923 kb on - strand, within Synpcc7942_0774 at 766.972 kb on - strand, within Synpcc7942_0774 at 766.975 kb on + strand, within Synpcc7942_0774 at 766.983 kb on - strand, within Synpcc7942_0774 at 767.012 kb on + strand, within Synpcc7942_0774 at 767.032 kb on + strand at 767.065 kb on + strand at 767.068 kb on - strand at 767.073 kb on - strand at 767.073 kb on - strand at 767.097 kb on + strand at 767.105 kb on - strand at 767.107 kb on + strand at 767.128 kb on + strand at 767.155 kb on + strand at 767.202 kb on + strand at 767.210 kb on - strand at 767.210 kb on - strand at 767.215 kb on + strand at 767.218 kb on - strand at 767.221 kb on + strand at 767.223 kb on - strand at 767.255 kb on + strand at 767.273 kb on - strand at 767.278 kb on - strand at 767.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 765,295 + Synpcc7942_0772 0.52 -4.6 765,308 - Synpcc7942_0772 0.55 +3.9 765,310 - Synpcc7942_0772 0.55 -0.7 765,338 - Synpcc7942_0772 0.60 -1.6 765,338 - Synpcc7942_0772 0.60 -1.5 765,355 - Synpcc7942_0772 0.62 +0.1 765,377 + Synpcc7942_0772 0.66 +1.9 765,390 + Synpcc7942_0772 0.68 -0.0 765,390 + Synpcc7942_0772 0.68 +1.5 765,414 + Synpcc7942_0772 0.72 -1.1 765,420 - Synpcc7942_0772 0.73 +1.6 765,422 - Synpcc7942_0772 0.74 +1.2 765,424 + Synpcc7942_0772 0.74 +0.3 765,424 + Synpcc7942_0772 0.74 +3.6 765,424 + Synpcc7942_0772 0.74 -1.1 765,424 + Synpcc7942_0772 0.74 -0.7 765,424 + Synpcc7942_0772 0.74 +1.2 765,424 + Synpcc7942_0772 0.74 -3.2 765,424 + Synpcc7942_0772 0.74 -0.7 765,432 - Synpcc7942_0772 0.75 -2.0 765,432 - Synpcc7942_0772 0.75 -1.6 765,432 - Synpcc7942_0772 0.75 -3.0 765,432 - Synpcc7942_0772 0.75 -1.2 765,432 - Synpcc7942_0772 0.75 -1.4 765,432 - Synpcc7942_0772 0.75 +1.7 765,435 + Synpcc7942_0772 0.76 -0.8 765,436 + Synpcc7942_0772 0.76 -0.8 765,456 + Synpcc7942_0772 0.79 -1.4 765,464 - Synpcc7942_0772 0.81 -1.4 765,521 + -1.3 765,523 - +2.8 765,535 + +1.7 765,542 + +0.9 765,542 + +0.8 765,542 + -0.8 765,547 + +1.6 765,550 - -1.4 765,550 - +2.3 765,552 + +4.5 765,553 - -0.8 765,579 - +1.8 765,581 - -1.4 765,687 + ycf52 Synpcc7942_0773 0.16 +1.3 765,701 + ycf52 Synpcc7942_0773 0.18 +0.7 765,748 + ycf52 Synpcc7942_0773 0.26 +2.4 765,762 - ycf52 Synpcc7942_0773 0.28 +1.3 765,786 - ycf52 Synpcc7942_0773 0.32 -0.9 765,813 + ycf52 Synpcc7942_0773 0.36 +2.0 765,850 + ycf52 Synpcc7942_0773 0.43 +2.1 765,856 + ycf52 Synpcc7942_0773 0.44 -0.3 765,919 + ycf52 Synpcc7942_0773 0.54 -0.5 765,952 - ycf52 Synpcc7942_0773 0.59 +1.7 765,952 - ycf52 Synpcc7942_0773 0.59 +1.1 766,014 - ycf52 Synpcc7942_0773 0.70 +0.7 766,048 - ycf52 Synpcc7942_0773 0.75 +3.2 766,085 - ycf52 Synpcc7942_0773 0.81 +0.8 766,092 - ycf52 Synpcc7942_0773 0.83 +1.6 766,100 + ycf52 Synpcc7942_0773 0.84 +4.9 766,101 - ycf52 Synpcc7942_0773 0.84 +1.0 766,113 - ycf52 Synpcc7942_0773 0.86 +0.7 766,143 - +4.1 766,154 + +2.8 766,154 + +0.2 766,162 - -0.2 766,182 - +2.2 766,186 - -2.1 766,221 - +0.7 766,248 - -3.4 766,250 + -2.2 766,258 - -3.3 766,272 - -4.0 766,310 + Synpcc7942_0774 0.11 -1.7 766,322 + Synpcc7942_0774 0.12 -2.4 766,322 + Synpcc7942_0774 0.12 -2.5 766,339 + Synpcc7942_0774 0.14 -1.8 766,354 - Synpcc7942_0774 0.16 -3.7 766,375 - Synpcc7942_0774 0.18 -2.4 766,375 - Synpcc7942_0774 0.18 -1.2 766,379 + Synpcc7942_0774 0.18 -2.3 766,379 + Synpcc7942_0774 0.18 -2.8 766,379 + Synpcc7942_0774 0.18 -2.9 766,379 + Synpcc7942_0774 0.18 -3.7 766,387 - Synpcc7942_0774 0.19 -1.9 766,387 - Synpcc7942_0774 0.19 -3.1 766,402 - Synpcc7942_0774 0.21 -2.9 766,402 - Synpcc7942_0774 0.21 -2.0 766,415 + Synpcc7942_0774 0.22 -2.2 766,418 - Synpcc7942_0774 0.23 -2.2 766,423 - Synpcc7942_0774 0.23 -3.0 766,423 - Synpcc7942_0774 0.23 -4.4 766,436 - Synpcc7942_0774 0.25 -2.5 766,473 - Synpcc7942_0774 0.29 -2.6 766,482 - Synpcc7942_0774 0.30 -2.5 766,509 + Synpcc7942_0774 0.33 -1.7 766,523 + Synpcc7942_0774 0.35 -3.6 766,535 + Synpcc7942_0774 0.36 -0.6 766,535 + Synpcc7942_0774 0.36 -4.8 766,540 + Synpcc7942_0774 0.36 -1.2 766,543 - Synpcc7942_0774 0.37 -3.2 766,543 - Synpcc7942_0774 0.37 -1.2 766,545 + Synpcc7942_0774 0.37 -1.3 766,545 + Synpcc7942_0774 0.37 +0.4 766,545 + Synpcc7942_0774 0.37 -2.5 766,545 + Synpcc7942_0774 0.37 -3.6 766,545 + Synpcc7942_0774 0.37 -3.0 766,553 - Synpcc7942_0774 0.38 -1.9 766,553 - Synpcc7942_0774 0.38 -2.0 766,553 - Synpcc7942_0774 0.38 -2.8 766,553 - Synpcc7942_0774 0.38 -1.9 766,585 - Synpcc7942_0774 0.42 -4.1 766,604 - -0.7 766,631 + Synpcc7942_0774 0.47 -1.0 766,803 + Synpcc7942_0774 0.66 -2.9 766,806 - Synpcc7942_0774 0.66 -3.0 766,824 + Synpcc7942_0774 0.68 -2.9 766,903 - -2.2 766,921 + Synpcc7942_0774 0.79 -1.8 766,923 - Synpcc7942_0774 0.80 -2.6 766,972 - Synpcc7942_0774 0.85 -3.7 766,975 + Synpcc7942_0774 0.85 -4.4 766,983 - Synpcc7942_0774 0.86 -1.0 767,012 + Synpcc7942_0774 0.90 -2.3 767,032 + -2.1 767,065 + -3.5 767,068 - -3.9 767,073 - -1.8 767,073 - -2.8 767,097 + +0.2 767,105 - +1.0 767,107 + +0.6 767,128 + -1.9 767,155 + +0.6 767,202 + +0.2 767,210 - +1.3 767,210 - -0.6 767,215 + +3.0 767,218 - +1.0 767,221 + -0.7 767,223 - +4.2 767,255 + -3.3 767,273 - -2.8 767,278 - +2.1 767,718 + +0.8
Or see this region's nucleotide sequence