Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0767 and Synpcc7942_0768 are separated by 674 nucleotides Synpcc7942_0768 and Synpcc7942_0769 are separated by 47 nucleotides Synpcc7942_0769 and Synpcc7942_0770 are separated by 30 nucleotides
Synpcc7942_0767: Synpcc7942_0767 - hypothetical protein, at 759,413 to 759,847
_0767
Synpcc7942_0768: Synpcc7942_0768 - hypothetical protein, at 760,522 to 761,178
_0768
Synpcc7942_0769: Synpcc7942_0769 - hypothetical protein, at 761,226 to 762,128
_0769
Synpcc7942_0770: Synpcc7942_0770 - hypothetical protein, at 762,159 to 763,643
_0770
Position (kb) 760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 759.522 kb on + strand, within Synpcc7942_0767 at 759.530 kb on - strand, within Synpcc7942_0767 at 759.530 kb on - strand, within Synpcc7942_0767 at 759.530 kb on - strand, within Synpcc7942_0767 at 759.530 kb on - strand, within Synpcc7942_0767 at 759.536 kb on + strand, within Synpcc7942_0767 at 759.537 kb on - strand, within Synpcc7942_0767 at 759.570 kb on + strand, within Synpcc7942_0767 at 759.573 kb on - strand, within Synpcc7942_0767 at 759.573 kb on - strand, within Synpcc7942_0767 at 759.578 kb on - strand, within Synpcc7942_0767 at 759.584 kb on - strand, within Synpcc7942_0767 at 759.629 kb on + strand, within Synpcc7942_0767 at 759.653 kb on + strand, within Synpcc7942_0767 at 759.653 kb on + strand, within Synpcc7942_0767 at 759.698 kb on + strand, within Synpcc7942_0767 at 759.698 kb on + strand, within Synpcc7942_0767 at 759.698 kb on + strand, within Synpcc7942_0767 at 759.698 kb on + strand, within Synpcc7942_0767 at 759.706 kb on - strand, within Synpcc7942_0767 at 759.711 kb on + strand, within Synpcc7942_0767 at 759.711 kb on - strand, within Synpcc7942_0767 at 759.730 kb on + strand, within Synpcc7942_0767 at 759.730 kb on + strand, within Synpcc7942_0767 at 759.738 kb on - strand, within Synpcc7942_0767 at 759.785 kb on - strand, within Synpcc7942_0767 at 759.814 kb on + strand at 759.834 kb on - strand at 759.913 kb on - strand at 759.961 kb on + strand at 759.973 kb on + strand at 759.978 kb on + strand at 760.015 kb on + strand at 760.015 kb on + strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.084 kb on + strand at 760.093 kb on + strand at 760.101 kb on - strand at 760.101 kb on - strand at 760.101 kb on - strand at 760.103 kb on + strand at 760.106 kb on - strand at 760.125 kb on - strand at 760.142 kb on - strand at 760.158 kb on - strand at 760.165 kb on + strand at 760.165 kb on + strand at 760.202 kb on + strand at 760.202 kb on + strand at 760.207 kb on - strand at 760.210 kb on - strand at 760.222 kb on - strand at 760.244 kb on + strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.260 kb on - strand at 760.311 kb on + strand at 760.337 kb on + strand at 760.337 kb on + strand at 760.342 kb on - strand at 760.345 kb on - strand at 760.347 kb on - strand at 760.349 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.390 kb on + strand at 760.390 kb on + strand at 760.398 kb on - strand at 760.398 kb on - strand at 760.400 kb on - strand at 760.417 kb on - strand at 760.457 kb on + strand at 760.457 kb on + strand at 760.489 kb on - strand at 760.589 kb on + strand, within Synpcc7942_0768 at 760.626 kb on + strand, within Synpcc7942_0768 at 760.633 kb on - strand, within Synpcc7942_0768 at 760.639 kb on + strand, within Synpcc7942_0768 at 760.644 kb on - strand, within Synpcc7942_0768 at 760.666 kb on - strand, within Synpcc7942_0768 at 760.704 kb on + strand, within Synpcc7942_0768 at 760.706 kb on + strand, within Synpcc7942_0768 at 760.712 kb on - strand, within Synpcc7942_0768 at 760.714 kb on - strand, within Synpcc7942_0768 at 760.714 kb on - strand, within Synpcc7942_0768 at 760.755 kb on + strand, within Synpcc7942_0768 at 760.755 kb on - strand, within Synpcc7942_0768 at 760.763 kb on - strand, within Synpcc7942_0768 at 760.769 kb on - strand, within Synpcc7942_0768 at 760.770 kb on + strand, within Synpcc7942_0768 at 760.783 kb on - strand, within Synpcc7942_0768 at 760.817 kb on - strand, within Synpcc7942_0768 at 760.833 kb on + strand, within Synpcc7942_0768 at 760.841 kb on - strand, within Synpcc7942_0768 at 760.844 kb on + strand, within Synpcc7942_0768 at 760.849 kb on + strand, within Synpcc7942_0768 at 760.852 kb on - strand, within Synpcc7942_0768 at 760.911 kb on + strand, within Synpcc7942_0768 at 760.917 kb on - strand, within Synpcc7942_0768 at 760.919 kb on - strand, within Synpcc7942_0768 at 760.919 kb on - strand at 760.934 kb on + strand, within Synpcc7942_0768 at 760.990 kb on - strand, within Synpcc7942_0768 at 760.995 kb on - strand, within Synpcc7942_0768 at 760.995 kb on - strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 760.997 kb on + strand, within Synpcc7942_0768 at 761.000 kb on - strand, within Synpcc7942_0768 at 761.002 kb on + strand, within Synpcc7942_0768 at 761.005 kb on - strand, within Synpcc7942_0768 at 761.044 kb on + strand, within Synpcc7942_0768 at 761.044 kb on + strand, within Synpcc7942_0768 at 761.052 kb on - strand, within Synpcc7942_0768 at 761.090 kb on + strand, within Synpcc7942_0768 at 761.092 kb on + strand, within Synpcc7942_0768 at 761.097 kb on + strand, within Synpcc7942_0768 at 761.100 kb on + strand, within Synpcc7942_0768 at 761.120 kb on - strand at 761.120 kb on - strand at 761.136 kb on + strand at 761.136 kb on + strand at 761.136 kb on + strand at 761.144 kb on - strand at 761.173 kb on + strand at 761.173 kb on + strand at 761.181 kb on - strand at 761.181 kb on - strand at 761.210 kb on + strand at 761.215 kb on - strand at 761.238 kb on - strand at 761.256 kb on + strand at 761.340 kb on - strand, within Synpcc7942_0769 at 761.343 kb on + strand, within Synpcc7942_0769 at 761.361 kb on - strand, within Synpcc7942_0769 at 761.387 kb on + strand, within Synpcc7942_0769 at 761.387 kb on + strand, within Synpcc7942_0769 at 761.395 kb on - strand, within Synpcc7942_0769 at 761.433 kb on + strand, within Synpcc7942_0769 at 761.433 kb on + strand, within Synpcc7942_0769 at 761.441 kb on - strand, within Synpcc7942_0769 at 761.469 kb on - strand, within Synpcc7942_0769 at 761.470 kb on + strand, within Synpcc7942_0769 at 761.478 kb on - strand, within Synpcc7942_0769 at 761.492 kb on - strand, within Synpcc7942_0769 at 761.506 kb on - strand, within Synpcc7942_0769 at 761.533 kb on + strand, within Synpcc7942_0769 at 761.548 kb on + strand, within Synpcc7942_0769 at 761.549 kb on - strand, within Synpcc7942_0769 at 761.553 kb on + strand, within Synpcc7942_0769 at 761.563 kb on + strand, within Synpcc7942_0769 at 761.563 kb on - strand, within Synpcc7942_0769 at 761.565 kb on + strand, within Synpcc7942_0769 at 761.565 kb on + strand, within Synpcc7942_0769 at 761.602 kb on - strand, within Synpcc7942_0769 at 761.624 kb on - strand, within Synpcc7942_0769 at 761.641 kb on - strand, within Synpcc7942_0769 at 761.644 kb on + strand, within Synpcc7942_0769 at 761.657 kb on + strand, within Synpcc7942_0769 at 761.664 kb on - strand, within Synpcc7942_0769 at 761.669 kb on + strand, within Synpcc7942_0769 at 761.676 kb on - strand, within Synpcc7942_0769 at 761.753 kb on + strand, within Synpcc7942_0769 at 761.761 kb on - strand, within Synpcc7942_0769 at 761.761 kb on - strand, within Synpcc7942_0769 at 761.763 kb on + strand, within Synpcc7942_0769 at 761.768 kb on + strand, within Synpcc7942_0769 at 761.855 kb on + strand, within Synpcc7942_0769 at 761.855 kb on + strand, within Synpcc7942_0769 at 761.855 kb on + strand, within Synpcc7942_0769 at 761.933 kb on - strand, within Synpcc7942_0769 at 761.954 kb on + strand, within Synpcc7942_0769 at 761.962 kb on - strand, within Synpcc7942_0769 at 762.011 kb on - strand, within Synpcc7942_0769 at 762.044 kb on + strand at 762.052 kb on - strand at 762.054 kb on - strand at 762.073 kb on + strand at 762.105 kb on + strand at 762.113 kb on + strand at 762.142 kb on + strand at 762.149 kb on + strand at 762.150 kb on - strand at 762.157 kb on - strand at 762.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 759,522 + Synpcc7942_0767 0.25 -0.7 759,530 - Synpcc7942_0767 0.27 -1.4 759,530 - Synpcc7942_0767 0.27 +1.1 759,530 - Synpcc7942_0767 0.27 -1.7 759,530 - Synpcc7942_0767 0.27 -0.8 759,536 + Synpcc7942_0767 0.28 +0.7 759,537 - Synpcc7942_0767 0.29 -0.4 759,570 + Synpcc7942_0767 0.36 -0.5 759,573 - Synpcc7942_0767 0.37 +1.1 759,573 - Synpcc7942_0767 0.37 -0.7 759,578 - Synpcc7942_0767 0.38 -2.7 759,584 - Synpcc7942_0767 0.39 +3.3 759,629 + Synpcc7942_0767 0.50 -0.4 759,653 + Synpcc7942_0767 0.55 -0.8 759,653 + Synpcc7942_0767 0.55 +2.7 759,698 + Synpcc7942_0767 0.66 -2.6 759,698 + Synpcc7942_0767 0.66 +1.3 759,698 + Synpcc7942_0767 0.66 +0.4 759,698 + Synpcc7942_0767 0.66 -0.8 759,706 - Synpcc7942_0767 0.67 -1.9 759,711 + Synpcc7942_0767 0.69 +0.2 759,711 - Synpcc7942_0767 0.69 +2.4 759,730 + Synpcc7942_0767 0.73 +0.2 759,730 + Synpcc7942_0767 0.73 +2.1 759,738 - Synpcc7942_0767 0.75 +1.4 759,785 - Synpcc7942_0767 0.86 -1.1 759,814 + +0.8 759,834 - +0.1 759,913 - -0.0 759,961 + -1.8 759,973 + +0.3 759,978 + +2.6 760,015 + -0.7 760,015 + -1.6 760,023 - -1.5 760,023 - +0.7 760,023 - -1.7 760,023 - +0.8 760,023 - +0.1 760,023 - -0.3 760,023 - -2.3 760,023 - -2.0 760,023 - +4.6 760,084 + +2.2 760,093 + +1.4 760,101 - -2.8 760,101 - +0.4 760,101 - +3.5 760,103 + -0.6 760,106 - -0.9 760,125 - +1.7 760,142 - +1.2 760,158 - -1.5 760,165 + +2.0 760,165 + -1.4 760,202 + +1.6 760,202 + -0.8 760,207 - -1.1 760,210 - -0.6 760,222 - +0.7 760,244 + -0.9 760,252 - -2.5 760,252 - +1.2 760,252 - +1.8 760,252 - -2.6 760,260 - +1.0 760,311 + -1.5 760,337 + -0.1 760,337 + -0.3 760,342 - -0.7 760,345 - +1.6 760,347 - +2.1 760,349 + -1.5 760,380 + +3.3 760,380 + +0.4 760,380 + -1.2 760,380 + +0.7 760,380 + +0.1 760,380 + +1.5 760,380 + -0.2 760,380 + -2.0 760,380 + -0.3 760,380 + +1.7 760,380 + +2.2 760,380 + +0.1 760,388 - +2.6 760,388 - -0.5 760,388 - +0.7 760,388 - -2.2 760,388 - +0.5 760,390 + +1.4 760,390 + +0.1 760,398 - +0.5 760,398 - +2.0 760,400 - +2.6 760,417 - +1.1 760,457 + -0.1 760,457 + +6.3 760,489 - +0.6 760,589 + Synpcc7942_0768 0.10 +1.2 760,626 + Synpcc7942_0768 0.16 -2.1 760,633 - Synpcc7942_0768 0.17 -1.2 760,639 + Synpcc7942_0768 0.18 -0.0 760,644 - Synpcc7942_0768 0.19 +0.2 760,666 - Synpcc7942_0768 0.22 -1.4 760,704 + Synpcc7942_0768 0.28 +1.7 760,706 + Synpcc7942_0768 0.28 -2.0 760,712 - Synpcc7942_0768 0.29 +0.3 760,714 - Synpcc7942_0768 0.29 +0.6 760,714 - Synpcc7942_0768 0.29 -0.3 760,755 + Synpcc7942_0768 0.35 -1.7 760,755 - Synpcc7942_0768 0.35 -2.0 760,763 - Synpcc7942_0768 0.37 -1.0 760,769 - Synpcc7942_0768 0.38 +0.4 760,770 + Synpcc7942_0768 0.38 -2.1 760,783 - Synpcc7942_0768 0.40 -2.0 760,817 - Synpcc7942_0768 0.45 -3.1 760,833 + Synpcc7942_0768 0.47 +1.4 760,841 - Synpcc7942_0768 0.49 -2.8 760,844 + Synpcc7942_0768 0.49 +0.7 760,849 + Synpcc7942_0768 0.50 -0.1 760,852 - Synpcc7942_0768 0.50 +1.0 760,911 + Synpcc7942_0768 0.59 -3.4 760,917 - Synpcc7942_0768 0.60 -2.1 760,919 - Synpcc7942_0768 0.60 -0.6 760,919 - -1.6 760,934 + Synpcc7942_0768 0.63 +1.4 760,990 - Synpcc7942_0768 0.71 -1.7 760,995 - Synpcc7942_0768 0.72 +1.7 760,995 - Synpcc7942_0768 0.72 +1.8 760,997 + Synpcc7942_0768 0.72 -0.5 760,997 + Synpcc7942_0768 0.72 -1.3 760,997 + Synpcc7942_0768 0.72 +1.9 760,997 + Synpcc7942_0768 0.72 -2.4 760,997 + Synpcc7942_0768 0.72 +1.5 760,997 + Synpcc7942_0768 0.72 -0.8 761,000 - Synpcc7942_0768 0.73 -0.2 761,002 + Synpcc7942_0768 0.73 -1.4 761,005 - Synpcc7942_0768 0.74 +1.4 761,044 + Synpcc7942_0768 0.79 -1.6 761,044 + Synpcc7942_0768 0.79 +0.5 761,052 - Synpcc7942_0768 0.81 -1.0 761,090 + Synpcc7942_0768 0.86 -2.1 761,092 + Synpcc7942_0768 0.87 +2.2 761,097 + Synpcc7942_0768 0.88 +4.8 761,100 + Synpcc7942_0768 0.88 -2.1 761,120 - -1.6 761,120 - -2.9 761,136 + +0.5 761,136 + +1.0 761,136 + +3.3 761,144 - -0.2 761,173 + -0.0 761,173 + -1.9 761,181 - -1.5 761,181 - +2.1 761,210 + -1.5 761,215 - -0.9 761,238 - +1.0 761,256 + +1.8 761,340 - Synpcc7942_0769 0.13 +0.4 761,343 + Synpcc7942_0769 0.13 +0.6 761,361 - Synpcc7942_0769 0.15 -1.6 761,387 + Synpcc7942_0769 0.18 +2.6 761,387 + Synpcc7942_0769 0.18 -2.0 761,395 - Synpcc7942_0769 0.19 -1.0 761,433 + Synpcc7942_0769 0.23 +0.2 761,433 + Synpcc7942_0769 0.23 -1.0 761,441 - Synpcc7942_0769 0.24 -2.8 761,469 - Synpcc7942_0769 0.27 -1.2 761,470 + Synpcc7942_0769 0.27 -1.4 761,478 - Synpcc7942_0769 0.28 +1.7 761,492 - Synpcc7942_0769 0.29 -1.0 761,506 - Synpcc7942_0769 0.31 -2.5 761,533 + Synpcc7942_0769 0.34 -1.9 761,548 + Synpcc7942_0769 0.36 -1.9 761,549 - Synpcc7942_0769 0.36 -0.6 761,553 + Synpcc7942_0769 0.36 -2.5 761,563 + Synpcc7942_0769 0.37 +2.3 761,563 - Synpcc7942_0769 0.37 -1.1 761,565 + Synpcc7942_0769 0.38 -1.3 761,565 + Synpcc7942_0769 0.38 +0.8 761,602 - Synpcc7942_0769 0.42 +2.2 761,624 - Synpcc7942_0769 0.44 -1.3 761,641 - Synpcc7942_0769 0.46 -0.7 761,644 + Synpcc7942_0769 0.46 +1.4 761,657 + Synpcc7942_0769 0.48 -2.4 761,664 - Synpcc7942_0769 0.49 +2.2 761,669 + Synpcc7942_0769 0.49 +2.1 761,676 - Synpcc7942_0769 0.50 +2.1 761,753 + Synpcc7942_0769 0.58 -0.1 761,761 - Synpcc7942_0769 0.59 -2.2 761,761 - Synpcc7942_0769 0.59 -2.4 761,763 + Synpcc7942_0769 0.59 +4.1 761,768 + Synpcc7942_0769 0.60 -2.4 761,855 + Synpcc7942_0769 0.70 +1.5 761,855 + Synpcc7942_0769 0.70 -1.1 761,855 + Synpcc7942_0769 0.70 -0.5 761,933 - Synpcc7942_0769 0.78 -1.4 761,954 + Synpcc7942_0769 0.81 -2.1 761,962 - Synpcc7942_0769 0.82 +3.8 762,011 - Synpcc7942_0769 0.87 -1.7 762,044 + -0.8 762,052 - -0.0 762,054 - -0.5 762,073 + -0.4 762,105 + -2.4 762,113 + -2.6 762,142 + +1.4 762,149 + +0.8 762,150 - +1.8 762,157 - -1.7 762,170 - -1.0
Or see this region's nucleotide sequence