Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0762 and Synpcc7942_0763 are separated by 427 nucleotides Synpcc7942_0763 and Synpcc7942_0764 are separated by 37 nucleotides Synpcc7942_0764 and Synpcc7942_0765 are separated by 243 nucleotides
Synpcc7942_0762: Synpcc7942_0762 - hypothetical protein, at 756,010 to 756,561
_0762
Synpcc7942_0763: Synpcc7942_0763 - transcriptional regulator, XRE family, at 756,989 to 757,318
_0763
Synpcc7942_0764: Synpcc7942_0764 - transcriptional regulator, XRE family, at 757,356 to 757,595
_0764
Synpcc7942_0765: Synpcc7942_0765 - hypothetical protein, at 757,839 to 758,327
_0765
Position (kb) 756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 756.570 kb on + strand at 756.580 kb on + strand at 756.679 kb on - strand at 756.703 kb on - strand at 756.704 kb on - strand at 756.714 kb on - strand at 756.714 kb on - strand at 756.753 kb on + strand at 756.775 kb on - strand at 757.043 kb on + strand, within Synpcc7942_0763 at 757.076 kb on + strand, within Synpcc7942_0763 at 757.084 kb on - strand, within Synpcc7942_0763 at 757.084 kb on - strand, within Synpcc7942_0763 at 757.091 kb on - strand, within Synpcc7942_0763 at 757.113 kb on - strand, within Synpcc7942_0763 at 757.115 kb on + strand, within Synpcc7942_0763 at 757.115 kb on + strand, within Synpcc7942_0763 at 757.123 kb on - strand, within Synpcc7942_0763 at 757.142 kb on - strand, within Synpcc7942_0763 at 757.181 kb on - strand, within Synpcc7942_0763 at 757.181 kb on - strand, within Synpcc7942_0763 at 757.181 kb on - strand, within Synpcc7942_0763 at 757.198 kb on + strand, within Synpcc7942_0763 at 757.201 kb on - strand, within Synpcc7942_0763 at 757.206 kb on - strand, within Synpcc7942_0763 at 757.206 kb on - strand, within Synpcc7942_0763 at 757.374 kb on + strand at 757.374 kb on - strand at 757.453 kb on - strand, within Synpcc7942_0764 at 757.497 kb on + strand, within Synpcc7942_0764 at 757.512 kb on + strand, within Synpcc7942_0764 at 757.547 kb on - strand, within Synpcc7942_0764 at 757.579 kb on - strand at 757.987 kb on + strand, within Synpcc7942_0765 at 758.039 kb on - strand, within Synpcc7942_0765 at 758.079 kb on + strand at 758.093 kb on + strand, within Synpcc7942_0765 at 758.093 kb on + strand, within Synpcc7942_0765 at 758.101 kb on - strand, within Synpcc7942_0765 at 758.122 kb on - strand, within Synpcc7942_0765 at 758.129 kb on + strand, within Synpcc7942_0765 at 758.142 kb on + strand, within Synpcc7942_0765 at 758.172 kb on + strand, within Synpcc7942_0765 at 758.177 kb on + strand, within Synpcc7942_0765 at 758.188 kb on + strand, within Synpcc7942_0765 at 758.212 kb on + strand, within Synpcc7942_0765 at 758.227 kb on + strand, within Synpcc7942_0765 at 758.242 kb on + strand, within Synpcc7942_0765 at 758.255 kb on - strand, within Synpcc7942_0765 at 758.257 kb on + strand, within Synpcc7942_0765 at 758.258 kb on - strand, within Synpcc7942_0765 at 758.265 kb on + strand, within Synpcc7942_0765 at 758.270 kb on + strand, within Synpcc7942_0765 at 758.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 756,570 + -2.4 756,580 + -0.3 756,679 - +2.1 756,703 - -3.2 756,704 - -3.0 756,714 - -1.9 756,714 - -2.3 756,753 + -2.0 756,775 - +0.4 757,043 + Synpcc7942_0763 0.16 -2.0 757,076 + Synpcc7942_0763 0.26 -1.3 757,084 - Synpcc7942_0763 0.29 -1.2 757,084 - Synpcc7942_0763 0.29 +0.4 757,091 - Synpcc7942_0763 0.31 +0.5 757,113 - Synpcc7942_0763 0.38 +0.1 757,115 + Synpcc7942_0763 0.38 +0.1 757,115 + Synpcc7942_0763 0.38 +0.7 757,123 - Synpcc7942_0763 0.41 +0.6 757,142 - Synpcc7942_0763 0.46 -0.8 757,181 - Synpcc7942_0763 0.58 -1.8 757,181 - Synpcc7942_0763 0.58 -2.1 757,181 - Synpcc7942_0763 0.58 -1.2 757,198 + Synpcc7942_0763 0.63 +0.4 757,201 - Synpcc7942_0763 0.64 +0.7 757,206 - Synpcc7942_0763 0.66 +1.7 757,206 - Synpcc7942_0763 0.66 +1.5 757,374 + +1.8 757,374 - +3.1 757,453 - Synpcc7942_0764 0.40 +2.8 757,497 + Synpcc7942_0764 0.59 -2.1 757,512 + Synpcc7942_0764 0.65 -2.3 757,547 - Synpcc7942_0764 0.80 -2.2 757,579 - +1.8 757,987 + Synpcc7942_0765 0.30 +0.2 758,039 - Synpcc7942_0765 0.41 -0.5 758,079 + -0.8 758,093 + Synpcc7942_0765 0.52 +1.1 758,093 + Synpcc7942_0765 0.52 -2.9 758,101 - Synpcc7942_0765 0.54 -2.6 758,122 - Synpcc7942_0765 0.58 -0.6 758,129 + Synpcc7942_0765 0.59 +0.6 758,142 + Synpcc7942_0765 0.62 -2.1 758,172 + Synpcc7942_0765 0.68 -0.9 758,177 + Synpcc7942_0765 0.69 +0.6 758,188 + Synpcc7942_0765 0.71 -0.2 758,212 + Synpcc7942_0765 0.76 +1.8 758,227 + Synpcc7942_0765 0.79 -3.4 758,242 + Synpcc7942_0765 0.82 +0.7 758,255 - Synpcc7942_0765 0.85 -2.7 758,257 + Synpcc7942_0765 0.85 +3.1 758,258 - Synpcc7942_0765 0.86 -0.7 758,265 + Synpcc7942_0765 0.87 -2.6 758,270 + Synpcc7942_0765 0.88 -0.6 758,295 - -0.7
Or see this region's nucleotide sequence