Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0735

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0734 and Synpcc7942_0735 are separated by 47 nucleotidesSynpcc7942_0735 and Synpcc7942_0736 are separated by 5 nucleotidesSynpcc7942_0736 and Synpcc7942_0737 overlap by 8 nucleotides Synpcc7942_0734: Synpcc7942_0734 - hypothetical protein, at 729,177 to 731,051 _0734 Synpcc7942_0735: Synpcc7942_0735 - hypothetical protein, at 731,099 to 731,428 _0735 Synpcc7942_0736: Synpcc7942_0736 - electron transfer protein, at 731,434 to 731,745 _0736 Synpcc7942_0737: Synpcc7942_0737 - hypothetical protein, at 731,738 to 732,376 _0737 Position (kb) 731 732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 730.110 kb on + strand, within Synpcc7942_0734at 730.130 kb on - strand, within Synpcc7942_0734at 730.151 kb on - strand, within Synpcc7942_0734at 730.153 kb on + strand, within Synpcc7942_0734at 730.153 kb on + strand, within Synpcc7942_0734at 730.178 kb on + strand, within Synpcc7942_0734at 730.181 kb on - strand, within Synpcc7942_0734at 730.184 kb on - strand, within Synpcc7942_0734at 730.214 kb on - strand, within Synpcc7942_0734at 730.214 kb on - strand, within Synpcc7942_0734at 730.232 kb on + strand, within Synpcc7942_0734at 730.254 kb on + strand, within Synpcc7942_0734at 730.254 kb on + strand, within Synpcc7942_0734at 730.259 kb on + strand, within Synpcc7942_0734at 730.259 kb on + strand, within Synpcc7942_0734at 730.262 kb on - strand, within Synpcc7942_0734at 730.267 kb on - strand, within Synpcc7942_0734at 730.277 kb on - strand, within Synpcc7942_0734at 730.277 kb on - strand, within Synpcc7942_0734at 730.279 kb on - strand, within Synpcc7942_0734at 730.282 kb on + strand, within Synpcc7942_0734at 730.290 kb on - strand, within Synpcc7942_0734at 730.290 kb on - strand, within Synpcc7942_0734at 730.299 kb on - strand, within Synpcc7942_0734at 730.324 kb on + strand, within Synpcc7942_0734at 730.367 kb on + strand, within Synpcc7942_0734at 730.371 kb on + strand, within Synpcc7942_0734at 730.404 kb on - strand, within Synpcc7942_0734at 730.412 kb on + strand, within Synpcc7942_0734at 730.427 kb on - strand, within Synpcc7942_0734at 730.444 kb on + strand, within Synpcc7942_0734at 730.553 kb on + strand, within Synpcc7942_0734at 730.555 kb on - strand, within Synpcc7942_0734at 730.576 kb on + strand, within Synpcc7942_0734at 730.578 kb on + strandat 730.581 kb on + strand, within Synpcc7942_0734at 730.581 kb on + strand, within Synpcc7942_0734at 730.584 kb on - strand, within Synpcc7942_0734at 730.584 kb on - strand, within Synpcc7942_0734at 730.584 kb on - strand, within Synpcc7942_0734at 730.586 kb on + strand, within Synpcc7942_0734at 730.586 kb on + strand, within Synpcc7942_0734at 730.586 kb on + strand, within Synpcc7942_0734at 730.586 kb on + strand, within Synpcc7942_0734at 730.586 kb on + strand, within Synpcc7942_0734at 730.586 kb on + strand, within Synpcc7942_0734at 730.589 kb on - strand, within Synpcc7942_0734at 730.589 kb on - strand, within Synpcc7942_0734at 730.589 kb on - strand, within Synpcc7942_0734at 730.589 kb on - strand, within Synpcc7942_0734at 730.591 kb on + strand, within Synpcc7942_0734at 730.594 kb on - strand, within Synpcc7942_0734at 730.594 kb on - strand, within Synpcc7942_0734at 730.594 kb on - strandat 730.594 kb on - strand, within Synpcc7942_0734at 730.594 kb on - strand, within Synpcc7942_0734at 730.594 kb on - strand, within Synpcc7942_0734at 730.600 kb on + strand, within Synpcc7942_0734at 730.608 kb on - strand, within Synpcc7942_0734at 730.608 kb on - strand, within Synpcc7942_0734at 730.625 kb on + strand, within Synpcc7942_0734at 730.625 kb on - strand, within Synpcc7942_0734at 730.629 kb on - strandat 730.633 kb on - strand, within Synpcc7942_0734at 730.637 kb on + strand, within Synpcc7942_0734at 730.637 kb on + strand, within Synpcc7942_0734at 730.637 kb on + strand, within Synpcc7942_0734at 730.649 kb on - strand, within Synpcc7942_0734at 730.659 kb on + strand, within Synpcc7942_0734at 730.659 kb on - strand, within Synpcc7942_0734at 730.677 kb on - strand, within Synpcc7942_0734at 730.771 kb on - strand, within Synpcc7942_0734at 730.794 kb on - strand, within Synpcc7942_0734at 730.794 kb on - strand, within Synpcc7942_0734at 730.794 kb on - strand, within Synpcc7942_0734at 730.835 kb on + strand, within Synpcc7942_0734at 730.853 kb on + strand, within Synpcc7942_0734at 730.853 kb on + strand, within Synpcc7942_0734at 730.853 kb on + strand, within Synpcc7942_0734at 730.861 kb on - strand, within Synpcc7942_0734at 730.861 kb on - strand, within Synpcc7942_0734at 730.861 kb on - strand, within Synpcc7942_0734at 730.868 kb on - strandat 730.876 kb on + strandat 730.876 kb on + strandat 730.889 kb on + strandat 730.897 kb on - strandat 730.897 kb on - strandat 730.911 kb on + strandat 730.912 kb on - strandat 730.912 kb on - strandat 730.967 kb on + strandat 730.975 kb on - strandat 730.975 kb on - strandat 730.975 kb on - strandat 731.021 kb on - strandat 731.021 kb on - strandat 731.032 kb on + strandat 731.040 kb on - strandat 731.040 kb on - strandat 731.040 kb on - strandat 731.047 kb on + strandat 731.057 kb on + strandat 731.060 kb on - strandat 731.060 kb on - strandat 731.064 kb on + strandat 731.067 kb on - strandat 731.067 kb on - strandat 731.067 kb on - strandat 731.067 kb on - strandat 731.076 kb on + strandat 731.076 kb on + strandat 731.084 kb on - strandat 731.084 kb on - strandat 731.135 kb on - strand, within Synpcc7942_0735at 731.135 kb on - strand, within Synpcc7942_0735at 731.170 kb on - strand, within Synpcc7942_0735at 731.171 kb on + strand, within Synpcc7942_0735at 731.174 kb on - strand, within Synpcc7942_0735at 731.184 kb on - strand, within Synpcc7942_0735at 731.222 kb on + strand, within Synpcc7942_0735at 731.255 kb on + strand, within Synpcc7942_0735at 731.260 kb on + strand, within Synpcc7942_0735at 731.260 kb on + strand, within Synpcc7942_0735at 731.297 kb on - strand, within Synpcc7942_0735at 731.304 kb on - strand, within Synpcc7942_0735at 731.305 kb on + strand, within Synpcc7942_0735at 731.378 kb on + strand, within Synpcc7942_0735at 731.382 kb on + strand, within Synpcc7942_0735at 731.382 kb on + strand, within Synpcc7942_0735at 731.396 kb on + strandat 731.405 kb on - strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.423 kb on + strandat 731.431 kb on - strandat 731.431 kb on - strandat 731.437 kb on + strandat 731.441 kb on + strandat 731.441 kb on + strandat 731.441 kb on + strandat 731.441 kb on + strandat 731.442 kb on + strandat 731.449 kb on - strandat 731.449 kb on - strandat 731.449 kb on - strandat 731.454 kb on - strandat 731.464 kb on - strandat 731.502 kb on + strandat 731.521 kb on + strand, within Synpcc7942_0736at 731.532 kb on + strand, within Synpcc7942_0736at 731.547 kb on + strand, within Synpcc7942_0736at 731.549 kb on - strand, within Synpcc7942_0736at 731.556 kb on + strand, within Synpcc7942_0736at 731.556 kb on + strand, within Synpcc7942_0736at 731.564 kb on - strand, within Synpcc7942_0736at 731.582 kb on + strand, within Synpcc7942_0736at 731.584 kb on + strand, within Synpcc7942_0736at 731.590 kb on - strand, within Synpcc7942_0736at 731.621 kb on + strand, within Synpcc7942_0736at 731.621 kb on + strand, within Synpcc7942_0736at 731.639 kb on + strand, within Synpcc7942_0736at 731.639 kb on + strand, within Synpcc7942_0736at 731.639 kb on + strand, within Synpcc7942_0736at 731.646 kb on + strand, within Synpcc7942_0736at 731.647 kb on - strand, within Synpcc7942_0736at 731.647 kb on - strand, within Synpcc7942_0736at 731.647 kb on - strand, within Synpcc7942_0736at 731.647 kb on - strand, within Synpcc7942_0736at 731.659 kb on - strand, within Synpcc7942_0736at 731.692 kb on - strand, within Synpcc7942_0736at 731.738 kb on - strandat 731.748 kb on - strandat 731.764 kb on - strandat 731.775 kb on + strandat 731.788 kb on + strandat 731.789 kb on + strandat 731.789 kb on + strandat 731.794 kb on - strandat 731.797 kb on - strandat 731.799 kb on + strandat 731.801 kb on + strandat 731.824 kb on - strand, within Synpcc7942_0737at 731.824 kb on - strand, within Synpcc7942_0737at 731.875 kb on - strand, within Synpcc7942_0737at 731.875 kb on - strand, within Synpcc7942_0737at 731.890 kb on + strand, within Synpcc7942_0737at 731.890 kb on - strand, within Synpcc7942_0737at 731.903 kb on - strand, within Synpcc7942_0737at 731.908 kb on - strand, within Synpcc7942_0737at 731.913 kb on - strand, within Synpcc7942_0737at 731.929 kb on - strand, within Synpcc7942_0737at 731.930 kb on - strand, within Synpcc7942_0737at 731.972 kb on + strand, within Synpcc7942_0737at 731.972 kb on + strand, within Synpcc7942_0737at 731.975 kb on - strand, within Synpcc7942_0737at 731.981 kb on + strand, within Synpcc7942_0737at 731.999 kb on + strand, within Synpcc7942_0737at 732.002 kb on - strand, within Synpcc7942_0737at 732.007 kb on - strand, within Synpcc7942_0737at 732.015 kb on - strand, within Synpcc7942_0737at 732.043 kb on + strand, within Synpcc7942_0737at 732.056 kb on + strand, within Synpcc7942_0737at 732.064 kb on - strand, within Synpcc7942_0737at 732.064 kb on - strand, within Synpcc7942_0737at 732.066 kb on + strand, within Synpcc7942_0737at 732.076 kb on - strand, within Synpcc7942_0737at 732.101 kb on - strand, within Synpcc7942_0737at 732.187 kb on + strand, within Synpcc7942_0737at 732.195 kb on - strand, within Synpcc7942_0737at 732.195 kb on - strand, within Synpcc7942_0737at 732.195 kb on - strand, within Synpcc7942_0737at 732.200 kb on - strand, within Synpcc7942_0737at 732.230 kb on - strand, within Synpcc7942_0737at 732.254 kb on + strand, within Synpcc7942_0737at 732.254 kb on + strand, within Synpcc7942_0737at 732.254 kb on + strand, within Synpcc7942_0737at 732.259 kb on + strand, within Synpcc7942_0737at 732.262 kb on - strand, within Synpcc7942_0737at 732.262 kb on - strand, within Synpcc7942_0737at 732.279 kb on + strand, within Synpcc7942_0737at 732.295 kb on + strand, within Synpcc7942_0737at 732.300 kb on + strand, within Synpcc7942_0737at 732.303 kb on - strand, within Synpcc7942_0737at 732.333 kb on + strandat 732.333 kb on + strandat 732.341 kb on - strandat 732.356 kb on + strandat 732.397 kb on + strandat 732.397 kb on + strandat 732.407 kb on + strandat 732.407 kb on + strandat 732.407 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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730,110 + Synpcc7942_0734 0.50 -2.0
730,130 - Synpcc7942_0734 0.51 -2.7
730,151 - Synpcc7942_0734 0.52 -1.0
730,153 + Synpcc7942_0734 0.52 +0.4
730,153 + Synpcc7942_0734 0.52 +2.8
730,178 + Synpcc7942_0734 0.53 -1.5
730,181 - Synpcc7942_0734 0.54 +0.2
730,184 - Synpcc7942_0734 0.54 +1.1
730,214 - Synpcc7942_0734 0.55 +0.2
730,214 - Synpcc7942_0734 0.55 -1.6
730,232 + Synpcc7942_0734 0.56 +1.0
730,254 + Synpcc7942_0734 0.57 +1.8
730,254 + Synpcc7942_0734 0.57 -1.7
730,259 + Synpcc7942_0734 0.58 -1.6
730,259 + Synpcc7942_0734 0.58 -2.2
730,262 - Synpcc7942_0734 0.58 +1.1
730,267 - Synpcc7942_0734 0.58 +2.0
730,277 - Synpcc7942_0734 0.59 +1.6
730,277 - Synpcc7942_0734 0.59 -2.4
730,279 - Synpcc7942_0734 0.59 +0.4
730,282 + Synpcc7942_0734 0.59 +0.2
730,290 - Synpcc7942_0734 0.59 -0.2
730,290 - Synpcc7942_0734 0.59 +0.4
730,299 - Synpcc7942_0734 0.60 +2.2
730,324 + Synpcc7942_0734 0.61 +1.7
730,367 + Synpcc7942_0734 0.63 +2.0
730,371 + Synpcc7942_0734 0.64 -1.3
730,404 - Synpcc7942_0734 0.65 -0.3
730,412 + Synpcc7942_0734 0.66 +2.1
730,427 - Synpcc7942_0734 0.67 -1.6
730,444 + Synpcc7942_0734 0.68 -2.7
730,553 + Synpcc7942_0734 0.73 +1.0
730,555 - Synpcc7942_0734 0.73 -1.9
730,576 + Synpcc7942_0734 0.75 -1.0
730,578 + -0.6
730,581 + Synpcc7942_0734 0.75 -0.2
730,581 + Synpcc7942_0734 0.75 -1.3
730,584 - Synpcc7942_0734 0.75 +0.9
730,584 - Synpcc7942_0734 0.75 -1.7
730,584 - Synpcc7942_0734 0.75 +0.1
730,586 + Synpcc7942_0734 0.75 -1.6
730,586 + Synpcc7942_0734 0.75 +0.1
730,586 + Synpcc7942_0734 0.75 +1.4
730,586 + Synpcc7942_0734 0.75 -2.0
730,586 + Synpcc7942_0734 0.75 +0.4
730,586 + Synpcc7942_0734 0.75 +0.1
730,589 - Synpcc7942_0734 0.75 +2.6
730,589 - Synpcc7942_0734 0.75 +2.1
730,589 - Synpcc7942_0734 0.75 +0.5
730,589 - Synpcc7942_0734 0.75 +0.4
730,591 + Synpcc7942_0734 0.75 +1.0
730,594 - Synpcc7942_0734 0.76 +0.6
730,594 - Synpcc7942_0734 0.76 -1.6
730,594 - +2.7
730,594 - Synpcc7942_0734 0.76 -0.4
730,594 - Synpcc7942_0734 0.76 +0.4
730,594 - Synpcc7942_0734 0.76 +1.0
730,600 + Synpcc7942_0734 0.76 -0.3
730,608 - Synpcc7942_0734 0.76 -0.2
730,608 - Synpcc7942_0734 0.76 +0.2
730,625 + Synpcc7942_0734 0.77 +1.7
730,625 - Synpcc7942_0734 0.77 -1.5
730,629 - -0.0
730,633 - Synpcc7942_0734 0.78 -1.2
730,637 + Synpcc7942_0734 0.78 -0.8
730,637 + Synpcc7942_0734 0.78 -0.8
730,637 + Synpcc7942_0734 0.78 -3.0
730,649 - Synpcc7942_0734 0.79 -1.1
730,659 + Synpcc7942_0734 0.79 -0.0
730,659 - Synpcc7942_0734 0.79 -0.5
730,677 - Synpcc7942_0734 0.80 +3.6
730,771 - Synpcc7942_0734 0.85 -1.9
730,794 - Synpcc7942_0734 0.86 -2.3
730,794 - Synpcc7942_0734 0.86 +0.8
730,794 - Synpcc7942_0734 0.86 +2.7
730,835 + Synpcc7942_0734 0.88 +1.9
730,853 + Synpcc7942_0734 0.89 -0.3
730,853 + Synpcc7942_0734 0.89 -0.1
730,853 + Synpcc7942_0734 0.89 +0.4
730,861 - Synpcc7942_0734 0.90 -1.0
730,861 - Synpcc7942_0734 0.90 -0.6
730,861 - Synpcc7942_0734 0.90 +1.1
730,868 - +2.2
730,876 + +1.8
730,876 + +1.4
730,889 + +0.5
730,897 - +0.8
730,897 - -2.3
730,911 + +0.9
730,912 - -0.7
730,912 - -0.2
730,967 + +2.9
730,975 - +3.5
730,975 - +2.1
730,975 - -0.6
731,021 - -1.5
731,021 - -0.6
731,032 + -2.9
731,040 - -0.1
731,040 - +0.7
731,040 - +1.6
731,047 + +2.6
731,057 + -1.9
731,060 - -2.1
731,060 - -0.8
731,064 + -1.5
731,067 - +0.6
731,067 - +2.6
731,067 - -0.1
731,067 - +3.1
731,076 + -0.9
731,076 + +0.8
731,084 - +1.1
731,084 - +3.6
731,135 - Synpcc7942_0735 0.11 +1.3
731,135 - Synpcc7942_0735 0.11 +0.6
731,170 - Synpcc7942_0735 0.22 -2.6
731,171 + Synpcc7942_0735 0.22 -3.4
731,174 - Synpcc7942_0735 0.23 -0.7
731,184 - Synpcc7942_0735 0.26 -1.8
731,222 + Synpcc7942_0735 0.37 -1.0
731,255 + Synpcc7942_0735 0.47 -0.9
731,260 + Synpcc7942_0735 0.49 +2.4
731,260 + Synpcc7942_0735 0.49 +0.8
731,297 - Synpcc7942_0735 0.60 +0.8
731,304 - Synpcc7942_0735 0.62 +1.4
731,305 + Synpcc7942_0735 0.62 -1.2
731,378 + Synpcc7942_0735 0.85 -1.9
731,382 + Synpcc7942_0735 0.86 +0.6
731,382 + Synpcc7942_0735 0.86 -1.3
731,396 + -3.1
731,405 - -1.6
731,423 + +0.1
731,423 + +1.3
731,423 + -0.5
731,423 + -0.3
731,423 + +1.2
731,423 + +0.4
731,423 + +2.0
731,423 + +0.5
731,423 + +1.0
731,423 + -0.6
731,431 - +1.0
731,431 - -1.6
731,437 + -1.6
731,441 + -2.2
731,441 + +0.1
731,441 + -1.8
731,441 + -1.1
731,442 + -1.3
731,449 - -3.3
731,449 - +1.3
731,449 - -0.8
731,454 - -1.8
731,464 - -0.5
731,502 + +0.8
731,521 + Synpcc7942_0736 0.28 +4.3
731,532 + Synpcc7942_0736 0.31 -1.8
731,547 + Synpcc7942_0736 0.36 -1.9
731,549 - Synpcc7942_0736 0.37 +2.1
731,556 + Synpcc7942_0736 0.39 -1.2
731,556 + Synpcc7942_0736 0.39 +1.1
731,564 - Synpcc7942_0736 0.42 +1.2
731,582 + Synpcc7942_0736 0.47 +1.3
731,584 + Synpcc7942_0736 0.48 -0.5
731,590 - Synpcc7942_0736 0.50 +2.8
731,621 + Synpcc7942_0736 0.60 -1.7
731,621 + Synpcc7942_0736 0.60 +3.2
731,639 + Synpcc7942_0736 0.66 -0.9
731,639 + Synpcc7942_0736 0.66 -2.0
731,639 + Synpcc7942_0736 0.66 +2.3
731,646 + Synpcc7942_0736 0.68 +0.2
731,647 - Synpcc7942_0736 0.68 -2.3
731,647 - Synpcc7942_0736 0.68 -1.7
731,647 - Synpcc7942_0736 0.68 -2.6
731,647 - Synpcc7942_0736 0.68 +0.8
731,659 - Synpcc7942_0736 0.72 -1.0
731,692 - Synpcc7942_0736 0.83 +1.7
731,738 - -0.9
731,748 - -1.2
731,764 - +1.7
731,775 + +0.2
731,788 + -0.3
731,789 + +1.8
731,789 + -0.7
731,794 - +1.5
731,797 - +1.3
731,799 + +1.3
731,801 + -0.5
731,824 - Synpcc7942_0737 0.13 +4.2
731,824 - Synpcc7942_0737 0.13 -1.3
731,875 - Synpcc7942_0737 0.21 +1.7
731,875 - Synpcc7942_0737 0.21 -2.3
731,890 + Synpcc7942_0737 0.24 +1.5
731,890 - Synpcc7942_0737 0.24 -2.3
731,903 - Synpcc7942_0737 0.26 -2.8
731,908 - Synpcc7942_0737 0.27 +1.8
731,913 - Synpcc7942_0737 0.27 -1.6
731,929 - Synpcc7942_0737 0.30 -0.0
731,930 - Synpcc7942_0737 0.30 +2.9
731,972 + Synpcc7942_0737 0.37 -1.5
731,972 + Synpcc7942_0737 0.37 +0.8
731,975 - Synpcc7942_0737 0.37 +0.3
731,981 + Synpcc7942_0737 0.38 +2.4
731,999 + Synpcc7942_0737 0.41 -1.3
732,002 - Synpcc7942_0737 0.41 -1.7
732,007 - Synpcc7942_0737 0.42 +2.6
732,015 - Synpcc7942_0737 0.43 -2.2
732,043 + Synpcc7942_0737 0.48 -2.2
732,056 + Synpcc7942_0737 0.50 -0.8
732,064 - Synpcc7942_0737 0.51 +0.9
732,064 - Synpcc7942_0737 0.51 -1.5
732,066 + Synpcc7942_0737 0.51 -0.1
732,076 - Synpcc7942_0737 0.53 -2.1
732,101 - Synpcc7942_0737 0.57 -0.8
732,187 + Synpcc7942_0737 0.70 -2.5
732,195 - Synpcc7942_0737 0.72 +1.6
732,195 - Synpcc7942_0737 0.72 -2.0
732,195 - Synpcc7942_0737 0.72 -2.0
732,200 - Synpcc7942_0737 0.72 +0.0
732,230 - Synpcc7942_0737 0.77 -1.4
732,254 + Synpcc7942_0737 0.81 -2.5
732,254 + Synpcc7942_0737 0.81 -1.3
732,254 + Synpcc7942_0737 0.81 +1.3
732,259 + Synpcc7942_0737 0.82 +3.1
732,262 - Synpcc7942_0737 0.82 +2.0
732,262 - Synpcc7942_0737 0.82 -0.1
732,279 + Synpcc7942_0737 0.85 -0.1
732,295 + Synpcc7942_0737 0.87 +1.0
732,300 + Synpcc7942_0737 0.88 -3.1
732,303 - Synpcc7942_0737 0.88 +1.7
732,333 + -0.3
732,333 + -0.4
732,341 - -1.6
732,356 + +0.7
732,397 + -1.7
732,397 + -0.7
732,407 + -0.9
732,407 + +0.2
732,407 + +1.5

Or see this region's nucleotide sequence