Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0720 and Synpcc7942_0721 are separated by 202 nucleotides Synpcc7942_0721 and Synpcc7942_0722 are separated by 60 nucleotides Synpcc7942_0722 and Synpcc7942_0723 are separated by 296 nucleotides Synpcc7942_0723 and Synpcc7942_0724 are separated by 40 nucleotides
Synpcc7942_0720: Synpcc7942_0720 - hypothetical protein, at 715,051 to 715,389
_0720
Synpcc7942_0721: Synpcc7942_0721 - hypothetical protein, at 715,592 to 715,882
_0721
Synpcc7942_0722: Synpcc7942_0722 - hypothetical protein, at 715,943 to 717,025
_0722
Synpcc7942_0723: Synpcc7942_0723 - hypothetical protein, at 717,322 to 717,963
_0723
Synpcc7942_0724: Synpcc7942_0724 - hypothetical protein, at 718,004 to 718,447
_0724
Position (kb) 715
716
717
718 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 714.948 kb on - strand at 714.977 kb on - strand at 714.979 kb on - strand at 714.995 kb on - strand at 715.006 kb on + strand at 715.007 kb on + strand at 715.018 kb on + strand at 715.040 kb on - strand at 715.056 kb on + strand at 715.064 kb on - strand at 715.064 kb on - strand at 715.068 kb on + strand at 715.125 kb on + strand, within Synpcc7942_0720 at 715.194 kb on + strand, within Synpcc7942_0720 at 715.196 kb on - strand at 715.202 kb on - strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.274 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.384 kb on + strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.401 kb on + strand at 715.401 kb on + strand at 715.431 kb on + strand at 715.442 kb on + strand at 715.442 kb on + strand at 715.449 kb on + strand at 715.449 kb on + strand at 715.457 kb on - strand at 715.464 kb on + strand at 715.464 kb on + strand at 715.467 kb on - strand at 715.470 kb on + strand at 715.472 kb on - strand at 715.495 kb on - strand at 715.544 kb on - strand at 715.571 kb on + strand at 715.598 kb on - strand at 715.603 kb on - strand at 715.607 kb on + strand at 715.607 kb on + strand at 715.615 kb on - strand at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.635 kb on + strand, within Synpcc7942_0721 at 715.668 kb on + strand, within Synpcc7942_0721 at 715.679 kb on - strand, within Synpcc7942_0721 at 715.681 kb on - strand, within Synpcc7942_0721 at 715.686 kb on - strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.723 kb on + strand, within Synpcc7942_0721 at 715.725 kb on - strand, within Synpcc7942_0721 at 715.801 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.815 kb on + strand, within Synpcc7942_0721 at 715.829 kb on + strand, within Synpcc7942_0721 at 715.943 kb on - strand at 715.943 kb on - strand at 715.943 kb on - strand at 715.969 kb on + strand at 715.999 kb on + strand at 716.004 kb on + strand at 716.004 kb on + strand at 716.011 kb on - strand at 716.071 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.082 kb on + strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.089 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.090 kb on - strand, within Synpcc7942_0722 at 716.101 kb on + strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.109 kb on - strand, within Synpcc7942_0722 at 716.116 kb on + strand, within Synpcc7942_0722 at 716.124 kb on - strand, within Synpcc7942_0722 at 716.149 kb on - strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.151 kb on + strand, within Synpcc7942_0722 at 716.159 kb on - strand, within Synpcc7942_0722 at 716.184 kb on - strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.220 kb on + strand, within Synpcc7942_0722 at 716.221 kb on + strand, within Synpcc7942_0722 at 716.230 kb on + strand, within Synpcc7942_0722 at 716.236 kb on + strand, within Synpcc7942_0722 at 716.284 kb on + strand, within Synpcc7942_0722 at 716.289 kb on + strand at 716.301 kb on + strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.309 kb on - strand, within Synpcc7942_0722 at 716.341 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.356 kb on + strand, within Synpcc7942_0722 at 716.358 kb on + strand, within Synpcc7942_0722 at 716.374 kb on - strand, within Synpcc7942_0722 at 716.378 kb on + strand, within Synpcc7942_0722 at 716.378 kb on - strand, within Synpcc7942_0722 at 716.386 kb on - strand, within Synpcc7942_0722 at 716.387 kb on - strand, within Synpcc7942_0722 at 716.394 kb on - strand, within Synpcc7942_0722 at 716.397 kb on - strand, within Synpcc7942_0722 at 716.421 kb on - strand, within Synpcc7942_0722 at 716.421 kb on - strand at 716.430 kb on - strand at 716.448 kb on + strand, within Synpcc7942_0722 at 716.473 kb on - strand, within Synpcc7942_0722 at 716.475 kb on + strand, within Synpcc7942_0722 at 716.480 kb on + strand, within Synpcc7942_0722 at 716.480 kb on + strand, within Synpcc7942_0722 at 716.483 kb on - strand, within Synpcc7942_0722 at 716.532 kb on + strand, within Synpcc7942_0722 at 716.532 kb on + strand, within Synpcc7942_0722 at 716.532 kb on + strand at 716.532 kb on + strand, within Synpcc7942_0722 at 716.545 kb on - strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.566 kb on + strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.574 kb on - strand, within Synpcc7942_0722 at 716.583 kb on + strand, within Synpcc7942_0722 at 716.597 kb on - strand, within Synpcc7942_0722 at 716.607 kb on - strand, within Synpcc7942_0722 at 716.616 kb on + strand, within Synpcc7942_0722 at 716.635 kb on - strand, within Synpcc7942_0722 at 716.677 kb on - strand, within Synpcc7942_0722 at 716.687 kb on - strand, within Synpcc7942_0722 at 716.702 kb on - strand, within Synpcc7942_0722 at 716.707 kb on - strand, within Synpcc7942_0722 at 716.722 kb on - strand, within Synpcc7942_0722 at 716.729 kb on - strand, within Synpcc7942_0722 at 716.729 kb on - strand, within Synpcc7942_0722 at 716.764 kb on - strand, within Synpcc7942_0722 at 716.800 kb on + strand, within Synpcc7942_0722 at 716.808 kb on - strand, within Synpcc7942_0722 at 716.810 kb on - strand, within Synpcc7942_0722 at 716.823 kb on - strand, within Synpcc7942_0722 at 716.836 kb on + strand, within Synpcc7942_0722 at 716.854 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.860 kb on + strand, within Synpcc7942_0722 at 716.868 kb on - strand, within Synpcc7942_0722 at 716.879 kb on - strand, within Synpcc7942_0722 at 716.903 kb on - strand, within Synpcc7942_0722 at 716.903 kb on - strand, within Synpcc7942_0722 at 716.908 kb on + strand, within Synpcc7942_0722 at 716.913 kb on + strand, within Synpcc7942_0722 at 716.925 kb on + strand at 716.925 kb on + strand at 716.925 kb on + strand at 716.925 kb on + strand at 716.925 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.930 kb on + strand at 716.931 kb on + strand at 716.933 kb on - strand at 716.937 kb on + strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.938 kb on - strand at 716.947 kb on + strand at 716.960 kb on + strand at 716.967 kb on + strand at 716.978 kb on - strand at 716.988 kb on + strand at 716.996 kb on - strand at 717.112 kb on + strand at 717.167 kb on + strand at 717.167 kb on + strand at 717.167 kb on + strand at 717.175 kb on - strand at 717.175 kb on - strand at 717.204 kb on + strand at 717.204 kb on + strand at 717.212 kb on - strand at 717.212 kb on - strand at 717.233 kb on - strand at 717.271 kb on + strand at 717.271 kb on + strand at 717.284 kb on + strand at 717.284 kb on + strand at 717.284 kb on + strand at 717.287 kb on - strand at 717.290 kb on + strand at 717.309 kb on + strand at 717.317 kb on - strand at 717.317 kb on - strand at 717.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 714,948 - +0.1 714,977 - -0.1 714,979 - +3.2 714,995 - -2.1 715,006 + -2.6 715,007 + +0.5 715,018 + +0.4 715,040 - +0.4 715,056 + -2.9 715,064 - +0.6 715,064 - +0.1 715,068 + -0.8 715,125 + Synpcc7942_0720 0.22 -0.8 715,194 + Synpcc7942_0720 0.42 +2.8 715,196 - -1.3 715,202 - Synpcc7942_0720 0.45 -0.4 715,257 + Synpcc7942_0720 0.61 -2.5 715,257 + Synpcc7942_0720 0.61 -1.5 715,274 + Synpcc7942_0720 0.66 +4.2 715,284 + Synpcc7942_0720 0.69 +0.0 715,284 + Synpcc7942_0720 0.69 +4.0 715,384 + +0.1 715,392 - -0.3 715,392 - -1.7 715,392 - -2.0 715,392 - -1.5 715,401 + +2.9 715,401 + +1.6 715,431 + -1.2 715,442 + -2.1 715,442 + +0.7 715,449 + -0.8 715,449 + +0.4 715,457 - +1.0 715,464 + -2.1 715,464 + +1.7 715,467 - -0.5 715,470 + -0.8 715,472 - +2.4 715,495 - -1.5 715,544 - -1.8 715,571 + -0.6 715,598 - -0.3 715,603 - -2.0 715,607 + -0.6 715,607 + -1.6 715,615 - -1.3 715,630 - Synpcc7942_0721 0.13 -1.7 715,630 - Synpcc7942_0721 0.13 -1.0 715,630 - Synpcc7942_0721 0.13 -2.2 715,635 + Synpcc7942_0721 0.15 -1.0 715,668 + Synpcc7942_0721 0.26 -2.5 715,679 - Synpcc7942_0721 0.30 -3.0 715,681 - Synpcc7942_0721 0.31 -4.0 715,686 - Synpcc7942_0721 0.32 -1.3 715,689 + Synpcc7942_0721 0.33 +3.3 715,689 + Synpcc7942_0721 0.33 -3.5 715,723 + Synpcc7942_0721 0.45 -3.5 715,725 - Synpcc7942_0721 0.46 -3.6 715,801 + Synpcc7942_0721 0.72 -2.1 715,806 + Synpcc7942_0721 0.74 -4.5 715,806 + Synpcc7942_0721 0.74 -2.0 715,815 + Synpcc7942_0721 0.77 -1.3 715,829 + Synpcc7942_0721 0.81 +0.4 715,943 - -1.6 715,943 - +3.4 715,943 - +0.0 715,969 + -0.9 715,999 + +0.5 716,004 + -0.5 716,004 + -2.6 716,011 - +1.4 716,071 + Synpcc7942_0722 0.12 -1.0 716,082 + Synpcc7942_0722 0.13 -2.5 716,082 + Synpcc7942_0722 0.13 +0.0 716,089 - Synpcc7942_0722 0.13 -1.0 716,089 - Synpcc7942_0722 0.13 -2.5 716,089 - Synpcc7942_0722 0.13 +0.4 716,090 - Synpcc7942_0722 0.14 -3.4 716,090 - Synpcc7942_0722 0.14 -1.6 716,101 + Synpcc7942_0722 0.15 +1.8 716,109 - Synpcc7942_0722 0.15 +3.1 716,109 - Synpcc7942_0722 0.15 -0.2 716,116 + Synpcc7942_0722 0.16 +3.7 716,124 - Synpcc7942_0722 0.17 -0.1 716,149 - Synpcc7942_0722 0.19 -1.1 716,151 + Synpcc7942_0722 0.19 +2.6 716,151 + Synpcc7942_0722 0.19 +2.3 716,159 - Synpcc7942_0722 0.20 -2.2 716,184 - Synpcc7942_0722 0.22 -1.5 716,220 + Synpcc7942_0722 0.26 +0.6 716,220 + Synpcc7942_0722 0.26 -1.5 716,221 + Synpcc7942_0722 0.26 -1.0 716,230 + Synpcc7942_0722 0.27 -2.9 716,236 + Synpcc7942_0722 0.27 -2.1 716,284 + Synpcc7942_0722 0.31 -1.6 716,289 + -1.0 716,301 + Synpcc7942_0722 0.33 +3.4 716,309 - Synpcc7942_0722 0.34 +2.8 716,309 - Synpcc7942_0722 0.34 +0.8 716,309 - Synpcc7942_0722 0.34 -0.3 716,309 - Synpcc7942_0722 0.34 +0.3 716,341 + Synpcc7942_0722 0.37 -1.5 716,356 + Synpcc7942_0722 0.38 +1.5 716,356 + Synpcc7942_0722 0.38 -0.5 716,358 + Synpcc7942_0722 0.38 +0.3 716,374 - Synpcc7942_0722 0.40 +0.0 716,378 + Synpcc7942_0722 0.40 +4.4 716,378 - Synpcc7942_0722 0.40 +1.1 716,386 - Synpcc7942_0722 0.41 -1.7 716,387 - Synpcc7942_0722 0.41 -0.1 716,394 - Synpcc7942_0722 0.42 -1.3 716,397 - Synpcc7942_0722 0.42 +1.2 716,421 - Synpcc7942_0722 0.44 +3.4 716,421 - -0.3 716,430 - +2.0 716,448 + Synpcc7942_0722 0.47 +1.5 716,473 - Synpcc7942_0722 0.49 -3.1 716,475 + Synpcc7942_0722 0.49 -1.5 716,480 + Synpcc7942_0722 0.50 +1.1 716,480 + Synpcc7942_0722 0.50 +0.7 716,483 - Synpcc7942_0722 0.50 +1.5 716,532 + Synpcc7942_0722 0.54 -2.0 716,532 + Synpcc7942_0722 0.54 +0.7 716,532 + +0.0 716,532 + Synpcc7942_0722 0.54 +1.6 716,545 - Synpcc7942_0722 0.56 +1.4 716,566 + Synpcc7942_0722 0.58 +0.2 716,566 + Synpcc7942_0722 0.58 -2.5 716,566 + Synpcc7942_0722 0.58 +2.0 716,566 + Synpcc7942_0722 0.58 +0.5 716,566 + Synpcc7942_0722 0.58 -2.8 716,574 - Synpcc7942_0722 0.58 -0.8 716,574 - Synpcc7942_0722 0.58 +1.9 716,574 - Synpcc7942_0722 0.58 -1.3 716,583 + Synpcc7942_0722 0.59 -0.9 716,597 - Synpcc7942_0722 0.60 +0.0 716,607 - Synpcc7942_0722 0.61 -1.0 716,616 + Synpcc7942_0722 0.62 -1.3 716,635 - Synpcc7942_0722 0.64 -2.2 716,677 - Synpcc7942_0722 0.68 +1.6 716,687 - Synpcc7942_0722 0.69 -0.3 716,702 - Synpcc7942_0722 0.70 -2.1 716,707 - Synpcc7942_0722 0.71 -1.7 716,722 - Synpcc7942_0722 0.72 +2.6 716,729 - Synpcc7942_0722 0.73 +1.1 716,729 - Synpcc7942_0722 0.73 -1.6 716,764 - Synpcc7942_0722 0.76 -1.3 716,800 + Synpcc7942_0722 0.79 -2.0 716,808 - Synpcc7942_0722 0.80 +1.5 716,810 - Synpcc7942_0722 0.80 -2.4 716,823 - Synpcc7942_0722 0.81 +0.3 716,836 + Synpcc7942_0722 0.82 +3.6 716,854 + Synpcc7942_0722 0.84 -0.5 716,860 + Synpcc7942_0722 0.85 -1.6 716,860 + Synpcc7942_0722 0.85 -1.1 716,860 + Synpcc7942_0722 0.85 +0.9 716,868 - Synpcc7942_0722 0.85 -2.9 716,879 - Synpcc7942_0722 0.86 +1.6 716,903 - Synpcc7942_0722 0.89 -0.3 716,903 - Synpcc7942_0722 0.89 -3.1 716,908 + Synpcc7942_0722 0.89 +1.8 716,913 + Synpcc7942_0722 0.90 +2.7 716,925 + +1.5 716,925 + -1.2 716,925 + -0.8 716,925 + +0.4 716,925 + +0.5 716,930 + +2.5 716,930 + +0.9 716,930 + -2.4 716,930 + +0.2 716,930 + -1.3 716,930 + -3.5 716,930 + +0.5 716,931 + +2.4 716,933 - -0.7 716,937 + -0.6 716,938 - -1.5 716,938 - +1.7 716,938 - -2.2 716,938 - +2.0 716,938 - -0.9 716,938 - +1.2 716,938 - -2.6 716,938 - +0.8 716,938 - +0.4 716,947 + -0.6 716,960 + +2.2 716,967 + -0.5 716,978 - -2.2 716,988 + -1.2 716,996 - +2.7 717,112 + +0.1 717,167 + -0.8 717,167 + -1.2 717,167 + -2.4 717,175 - +4.6 717,175 - -0.5 717,204 + +2.1 717,204 + -0.6 717,212 - +1.8 717,212 - -0.5 717,233 - +0.2 717,271 + +0.9 717,271 + +1.3 717,284 + +1.7 717,284 + +0.2 717,284 + -1.5 717,287 - +0.0 717,290 + -2.2 717,309 + +0.6 717,317 - +1.0 717,317 - +0.9 717,368 - -1.8
Or see this region's nucleotide sequence