Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0689 and clpS overlap by 17 nucleotides clpS and Synpcc7942_0691 are separated by 134 nucleotides Synpcc7942_0691 and Synpcc7942_0692 overlap by 4 nucleotides Synpcc7942_0692 and Synpcc7942_0693 are separated by 61 nucleotides Synpcc7942_0693 and rps1 are separated by 52 nucleotides
Synpcc7942_0689: Synpcc7942_0689 - hypothetical protein, at 684,051 to 684,884
_0689
Synpcc7942_0690: clpS - ATP-dependent Clp protease adaptor protein ClpS, at 684,868 to 685,155
clpS
Synpcc7942_0691: Synpcc7942_0691 - hypothetical protein, at 685,290 to 685,634
_0691
Synpcc7942_0692: Synpcc7942_0692 - hypothetical protein, at 685,631 to 686,185
_0692
Synpcc7942_0693: Synpcc7942_0693 - hypothetical protein, at 686,247 to 687,080
_0693
Synpcc7942_0694: rps1 - 30S ribosomal protein S1, at 687,133 to 688,056
rps1
Position (kb) 685
686
687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 684.844 kb on + strand at 684.844 kb on + strand at 684.852 kb on - strand at 684.852 kb on - strand at 684.852 kb on - strand at 684.855 kb on - strand at 684.879 kb on + strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.895 kb on - strand at 684.905 kb on - strand, within clpS at 684.954 kb on + strand, within clpS at 684.994 kb on + strand, within clpS at 685.001 kb on + strand, within clpS at 685.020 kb on - strand, within clpS at 685.028 kb on + strand, within clpS at 685.036 kb on - strand, within clpS at 685.041 kb on - strand, within clpS at 685.049 kb on + strand, within clpS at 685.324 kb on + strand at 685.332 kb on - strand, within Synpcc7942_0691 at 685.332 kb on - strand, within Synpcc7942_0691 at 685.343 kb on + strand, within Synpcc7942_0691 at 685.351 kb on - strand, within Synpcc7942_0691 at 685.420 kb on + strand, within Synpcc7942_0691 at 685.420 kb on + strand, within Synpcc7942_0691 at 685.428 kb on - strand, within Synpcc7942_0691 at 685.428 kb on - strand, within Synpcc7942_0691 at 685.446 kb on - strand, within Synpcc7942_0691 at 685.458 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.495 kb on + strand, within Synpcc7942_0691 at 685.502 kb on + strand, within Synpcc7942_0691 at 685.504 kb on + strand, within Synpcc7942_0691 at 685.512 kb on - strand, within Synpcc7942_0691 at 685.514 kb on + strand, within Synpcc7942_0691 at 685.523 kb on - strand, within Synpcc7942_0691 at 685.562 kb on + strand, within Synpcc7942_0691 at 685.563 kb on + strand, within Synpcc7942_0691 at 685.571 kb on - strand, within Synpcc7942_0691 at 685.571 kb on - strand, within Synpcc7942_0691 at 685.573 kb on + strand, within Synpcc7942_0691 at 685.578 kb on + strand, within Synpcc7942_0691 at 685.592 kb on - strand, within Synpcc7942_0691 at 685.637 kb on - strand at 685.640 kb on + strand at 685.654 kb on + strand at 685.660 kb on + strand at 685.664 kb on + strand at 685.667 kb on - strand at 685.672 kb on - strand at 685.682 kb on + strand at 685.689 kb on - strand, within Synpcc7942_0692 at 685.689 kb on - strand, within Synpcc7942_0692 at 685.690 kb on - strand, within Synpcc7942_0692 at 685.690 kb on - strand, within Synpcc7942_0692 at 685.705 kb on + strand at 685.708 kb on - strand, within Synpcc7942_0692 at 685.716 kb on + strand, within Synpcc7942_0692 at 685.725 kb on + strand, within Synpcc7942_0692 at 685.725 kb on + strand, within Synpcc7942_0692 at 685.804 kb on + strand, within Synpcc7942_0692 at 685.872 kb on + strand, within Synpcc7942_0692 at 685.880 kb on - strand, within Synpcc7942_0692 at 685.886 kb on - strand, within Synpcc7942_0692 at 685.918 kb on + strand, within Synpcc7942_0692 at 685.957 kb on + strand, within Synpcc7942_0692 at 685.965 kb on - strand, within Synpcc7942_0692 at 686.041 kb on - strand, within Synpcc7942_0692 at 686.047 kb on - strand, within Synpcc7942_0692 at 686.048 kb on + strand, within Synpcc7942_0692 at 686.060 kb on - strand, within Synpcc7942_0692 at 686.112 kb on + strand, within Synpcc7942_0692 at 686.120 kb on + strand, within Synpcc7942_0692 at 686.120 kb on + strand, within Synpcc7942_0692 at 686.122 kb on - strand, within Synpcc7942_0692 at 686.128 kb on - strand, within Synpcc7942_0692 at 686.128 kb on - strand, within Synpcc7942_0692 at 686.138 kb on - strand at 686.138 kb on - strand at 686.139 kb on - strand at 686.140 kb on - strand at 686.164 kb on - strand at 686.168 kb on + strand at 686.189 kb on + strand at 686.189 kb on + strand at 686.189 kb on + strand at 686.196 kb on - strand at 686.197 kb on - strand at 686.203 kb on - strand at 686.214 kb on + strand at 686.224 kb on - strand at 686.254 kb on + strand at 686.345 kb on + strand, within Synpcc7942_0693 at 686.355 kb on + strand, within Synpcc7942_0693 at 686.449 kb on + strand, within Synpcc7942_0693 at 686.457 kb on - strand, within Synpcc7942_0693 at 686.469 kb on + strand, within Synpcc7942_0693 at 686.491 kb on + strand, within Synpcc7942_0693 at 686.576 kb on - strand, within Synpcc7942_0693 at 686.576 kb on - strand at 686.585 kb on + strand, within Synpcc7942_0693 at 686.669 kb on - strand, within Synpcc7942_0693 at 686.679 kb on - strand, within Synpcc7942_0693 at 686.728 kb on - strand, within Synpcc7942_0693 at 686.728 kb on - strand, within Synpcc7942_0693 at 686.739 kb on + strand, within Synpcc7942_0693 at 686.748 kb on - strand, within Synpcc7942_0693 at 686.753 kb on - strand, within Synpcc7942_0693 at 686.840 kb on + strand, within Synpcc7942_0693 at 686.852 kb on + strand, within Synpcc7942_0693 at 686.893 kb on + strand, within Synpcc7942_0693 at 686.904 kb on + strand, within Synpcc7942_0693 at 686.904 kb on + strand, within Synpcc7942_0693 at 686.912 kb on - strand, within Synpcc7942_0693 at 686.919 kb on + strand, within Synpcc7942_0693 at 686.935 kb on + strand, within Synpcc7942_0693 at 686.946 kb on + strand, within Synpcc7942_0693 at 686.947 kb on + strand, within Synpcc7942_0693 at 686.954 kb on - strand, within Synpcc7942_0693 at 686.955 kb on - strand, within Synpcc7942_0693 at 686.970 kb on + strand, within Synpcc7942_0693 at 686.970 kb on + strand, within Synpcc7942_0693 at 686.983 kb on - strand, within Synpcc7942_0693 at 686.998 kb on + strand at 686.998 kb on + strand at 687.033 kb on + strand at 687.038 kb on + strand at 687.046 kb on + strand at 687.054 kb on - strand at 687.063 kb on + strand at 687.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 684,844 + +0.8 684,844 + -0.0 684,852 - +1.8 684,852 - -1.4 684,852 - -1.6 684,855 - +0.9 684,879 + -2.1 684,887 - -0.8 684,887 - -0.7 684,887 - +0.4 684,887 - +0.4 684,887 - +0.2 684,895 - +0.2 684,905 - clpS Synpcc7942_0690 0.13 -2.0 684,954 + clpS Synpcc7942_0690 0.30 -2.2 684,994 + clpS Synpcc7942_0690 0.44 +3.9 685,001 + clpS Synpcc7942_0690 0.46 -1.4 685,020 - clpS Synpcc7942_0690 0.53 -0.6 685,028 + clpS Synpcc7942_0690 0.56 -2.4 685,036 - clpS Synpcc7942_0690 0.58 -2.4 685,041 - clpS Synpcc7942_0690 0.60 -0.9 685,049 + clpS Synpcc7942_0690 0.63 -0.1 685,324 + +0.9 685,332 - Synpcc7942_0691 0.12 -0.9 685,332 - Synpcc7942_0691 0.12 +2.3 685,343 + Synpcc7942_0691 0.15 +0.5 685,351 - Synpcc7942_0691 0.18 +2.3 685,420 + Synpcc7942_0691 0.38 -1.8 685,420 + Synpcc7942_0691 0.38 -0.6 685,428 - Synpcc7942_0691 0.40 +2.3 685,428 - Synpcc7942_0691 0.40 -0.1 685,446 - Synpcc7942_0691 0.45 -1.2 685,458 + Synpcc7942_0691 0.49 -1.6 685,494 + Synpcc7942_0691 0.59 -1.5 685,494 + Synpcc7942_0691 0.59 -0.3 685,494 + Synpcc7942_0691 0.59 +1.0 685,495 + Synpcc7942_0691 0.59 -0.0 685,502 + Synpcc7942_0691 0.61 +2.1 685,504 + Synpcc7942_0691 0.62 -0.7 685,512 - Synpcc7942_0691 0.64 +0.6 685,514 + Synpcc7942_0691 0.65 -1.5 685,523 - Synpcc7942_0691 0.68 +1.3 685,562 + Synpcc7942_0691 0.79 -2.6 685,563 + Synpcc7942_0691 0.79 +1.3 685,571 - Synpcc7942_0691 0.81 -1.4 685,571 - Synpcc7942_0691 0.81 +2.6 685,573 + Synpcc7942_0691 0.82 -0.4 685,578 + Synpcc7942_0691 0.83 -0.6 685,592 - Synpcc7942_0691 0.88 +1.0 685,637 - -2.3 685,640 + -0.6 685,654 + -0.5 685,660 + +0.1 685,664 + -0.8 685,667 - +1.0 685,672 - -3.0 685,682 + -0.0 685,689 - Synpcc7942_0692 0.10 -2.4 685,689 - Synpcc7942_0692 0.10 +0.9 685,690 - Synpcc7942_0692 0.11 -0.9 685,690 - Synpcc7942_0692 0.11 +1.4 685,705 + -1.3 685,708 - Synpcc7942_0692 0.14 -1.6 685,716 + Synpcc7942_0692 0.15 +1.0 685,725 + Synpcc7942_0692 0.17 -0.2 685,725 + Synpcc7942_0692 0.17 -1.3 685,804 + Synpcc7942_0692 0.31 -0.5 685,872 + Synpcc7942_0692 0.43 -2.3 685,880 - Synpcc7942_0692 0.45 -2.0 685,886 - Synpcc7942_0692 0.46 -0.7 685,918 + Synpcc7942_0692 0.52 -1.7 685,957 + Synpcc7942_0692 0.59 -1.5 685,965 - Synpcc7942_0692 0.60 +1.4 686,041 - Synpcc7942_0692 0.74 +1.5 686,047 - Synpcc7942_0692 0.75 +1.0 686,048 + Synpcc7942_0692 0.75 -1.1 686,060 - Synpcc7942_0692 0.77 +2.6 686,112 + Synpcc7942_0692 0.87 -1.7 686,120 + Synpcc7942_0692 0.88 -1.4 686,120 + Synpcc7942_0692 0.88 +1.4 686,122 - Synpcc7942_0692 0.88 -1.4 686,128 - Synpcc7942_0692 0.90 -0.6 686,128 - Synpcc7942_0692 0.90 +0.5 686,138 - +0.6 686,138 - -0.4 686,139 - -1.2 686,140 - -1.5 686,164 - -1.4 686,168 + +0.0 686,189 + -0.7 686,189 + +0.2 686,189 + -2.6 686,196 - +0.5 686,197 - +1.3 686,203 - -1.4 686,214 + +0.5 686,224 - +0.2 686,254 + -1.5 686,345 + Synpcc7942_0693 0.12 +1.8 686,355 + Synpcc7942_0693 0.13 +1.2 686,449 + Synpcc7942_0693 0.24 +1.3 686,457 - Synpcc7942_0693 0.25 +2.4 686,469 + Synpcc7942_0693 0.27 +2.1 686,491 + Synpcc7942_0693 0.29 +2.8 686,576 - Synpcc7942_0693 0.39 +1.4 686,576 - -1.3 686,585 + Synpcc7942_0693 0.41 -1.5 686,669 - Synpcc7942_0693 0.51 +1.5 686,679 - Synpcc7942_0693 0.52 +1.2 686,728 - Synpcc7942_0693 0.58 -1.2 686,728 - Synpcc7942_0693 0.58 -1.4 686,739 + Synpcc7942_0693 0.59 +1.3 686,748 - Synpcc7942_0693 0.60 +1.6 686,753 - Synpcc7942_0693 0.61 -2.4 686,840 + Synpcc7942_0693 0.71 -1.6 686,852 + Synpcc7942_0693 0.73 +4.7 686,893 + Synpcc7942_0693 0.77 -1.4 686,904 + Synpcc7942_0693 0.79 +0.8 686,904 + Synpcc7942_0693 0.79 -2.5 686,912 - Synpcc7942_0693 0.80 +1.0 686,919 + Synpcc7942_0693 0.81 +0.4 686,935 + Synpcc7942_0693 0.82 +0.4 686,946 + Synpcc7942_0693 0.84 +2.2 686,947 + Synpcc7942_0693 0.84 -1.8 686,954 - Synpcc7942_0693 0.85 -2.0 686,955 - Synpcc7942_0693 0.85 +2.0 686,970 + Synpcc7942_0693 0.87 +1.3 686,970 + Synpcc7942_0693 0.87 +2.2 686,983 - Synpcc7942_0693 0.88 +1.1 686,998 + +4.4 686,998 + -1.7 687,033 + +7.3 687,038 + +0.8 687,046 + -1.3 687,054 - +0.7 687,063 + -2.0 687,148 - +2.0
Or see this region's nucleotide sequence