Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psbC and Synpcc7942_0657 are separated by 387 nucleotides Synpcc7942_0657 and Synpcc7942_0658 are separated by 169 nucleotides Synpcc7942_0658 and Synpcc7942_0659 are separated by 83 nucleotides
Synpcc7942_0656: psbC - photosystem II 44 kDa subunit reaction center protein, at 651,274 to 652,659
psbC
Synpcc7942_0657: Synpcc7942_0657 - hypothetical protein, at 653,047 to 653,388
_0657
Synpcc7942_0658: Synpcc7942_0658 - hypothetical protein, at 653,558 to 653,770
_0658
Synpcc7942_0659: Synpcc7942_0659 - Rad3-related DNA helicases-like, at 653,854 to 655,275
_0659
Position (kb) 653
654 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 652.738 kb on + strand at 652.790 kb on + strand at 652.811 kb on - strand at 652.827 kb on + strand at 652.876 kb on - strand at 652.892 kb on - strand at 652.980 kb on - strand at 652.989 kb on - strand at 652.997 kb on + strand at 653.060 kb on - strand at 653.127 kb on - strand, within Synpcc7942_0657 at 653.362 kb on + strand at 653.404 kb on - strand at 653.520 kb on + strand at 653.520 kb on + strand at 653.523 kb on - strand at 653.542 kb on + strand at 653.557 kb on - strand at 653.579 kb on + strand at 653.587 kb on - strand, within Synpcc7942_0658 at 653.587 kb on - strand, within Synpcc7942_0658 at 653.587 kb on - strand at 653.589 kb on + strand, within Synpcc7942_0658 at 653.794 kb on + strand at 653.807 kb on + strand at 653.821 kb on + strand at 653.859 kb on - strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.879 kb on + strand at 653.887 kb on - strand at 653.898 kb on + strand at 653.898 kb on + strand at 653.914 kb on + strand at 653.916 kb on - strand at 654.002 kb on - strand, within Synpcc7942_0659 at 654.043 kb on + strand, within Synpcc7942_0659 at 654.129 kb on + strand, within Synpcc7942_0659 at 654.134 kb on + strand, within Synpcc7942_0659 at 654.137 kb on - strand, within Synpcc7942_0659 at 654.147 kb on - strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.174 kb on + strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.182 kb on - strand, within Synpcc7942_0659 at 654.195 kb on + strand, within Synpcc7942_0659 at 654.203 kb on - strand, within Synpcc7942_0659 at 654.203 kb on - strand, within Synpcc7942_0659 at 654.212 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.222 kb on + strand, within Synpcc7942_0659 at 654.243 kb on + strand, within Synpcc7942_0659 at 654.251 kb on - strand, within Synpcc7942_0659 at 654.315 kb on - strand, within Synpcc7942_0659 at 654.317 kb on - strand, within Synpcc7942_0659 at 654.334 kb on + strand, within Synpcc7942_0659 at 654.336 kb on + strand, within Synpcc7942_0659 at 654.356 kb on + strand, within Synpcc7942_0659 at 654.364 kb on - strand, within Synpcc7942_0659 at 654.369 kb on - strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.410 kb on + strand, within Synpcc7942_0659 at 654.415 kb on + strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.418 kb on - strand, within Synpcc7942_0659 at 654.478 kb on - strand, within Synpcc7942_0659 at 654.491 kb on + strand, within Synpcc7942_0659 at 654.515 kb on + strand, within Synpcc7942_0659 at 654.534 kb on - strand, within Synpcc7942_0659 at 654.547 kb on - strand, within Synpcc7942_0659 at 654.548 kb on - strand, within Synpcc7942_0659 at 654.562 kb on + strand, within Synpcc7942_0659 at 654.562 kb on + strand, within Synpcc7942_0659 at 654.615 kb on - strand, within Synpcc7942_0659 at 654.615 kb on - strand at 654.626 kb on + strand, within Synpcc7942_0659 at 654.634 kb on - strand, within Synpcc7942_0659 at 654.634 kb on - strand, within Synpcc7942_0659 at 654.639 kb on - strand, within Synpcc7942_0659 at 654.671 kb on - strand, within Synpcc7942_0659 at 654.672 kb on - strand, within Synpcc7942_0659 at 654.687 kb on + strand, within Synpcc7942_0659 at 654.754 kb on - strand, within Synpcc7942_0659 at 654.755 kb on - strand, within Synpcc7942_0659 at 654.762 kb on + strand, within Synpcc7942_0659
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 652,738 + -1.0 652,790 + -1.1 652,811 - -1.0 652,827 + +0.1 652,876 - -1.4 652,892 - -1.1 652,980 - +1.6 652,989 - +1.1 652,997 + -3.6 653,060 - -2.6 653,127 - Synpcc7942_0657 0.23 -1.7 653,362 + -1.5 653,404 - -2.1 653,520 + +1.5 653,520 + -0.7 653,523 - -0.6 653,542 + -2.7 653,557 - -1.8 653,579 + -1.9 653,587 - Synpcc7942_0658 0.14 -3.5 653,587 - Synpcc7942_0658 0.14 -1.6 653,587 - -0.3 653,589 + Synpcc7942_0658 0.15 -1.0 653,794 + +2.0 653,807 + -1.5 653,821 + +0.7 653,859 - -4.1 653,879 + +2.9 653,879 + +1.7 653,879 + +0.3 653,879 + +1.9 653,879 + +1.6 653,887 - +2.6 653,898 + +1.9 653,898 + +1.2 653,914 + +2.9 653,916 - +1.4 654,002 - Synpcc7942_0659 0.10 +2.5 654,043 + Synpcc7942_0659 0.13 +2.7 654,129 + Synpcc7942_0659 0.19 +0.8 654,134 + Synpcc7942_0659 0.20 +1.4 654,137 - Synpcc7942_0659 0.20 +3.9 654,147 - Synpcc7942_0659 0.21 -0.8 654,174 + Synpcc7942_0659 0.23 +1.4 654,174 + Synpcc7942_0659 0.23 +1.6 654,174 + Synpcc7942_0659 0.23 +5.6 654,182 - Synpcc7942_0659 0.23 +2.1 654,182 - Synpcc7942_0659 0.23 -0.3 654,182 - Synpcc7942_0659 0.23 +0.8 654,195 + Synpcc7942_0659 0.24 +0.7 654,203 - Synpcc7942_0659 0.25 +0.9 654,203 - Synpcc7942_0659 0.25 +0.0 654,212 + Synpcc7942_0659 0.25 -0.4 654,222 + Synpcc7942_0659 0.26 +0.5 654,222 + Synpcc7942_0659 0.26 -0.2 654,222 + Synpcc7942_0659 0.26 +0.5 654,243 + Synpcc7942_0659 0.27 +2.0 654,251 - Synpcc7942_0659 0.28 -1.2 654,315 - Synpcc7942_0659 0.32 +0.7 654,317 - Synpcc7942_0659 0.33 +1.5 654,334 + Synpcc7942_0659 0.34 +0.4 654,336 + Synpcc7942_0659 0.34 +2.0 654,356 + Synpcc7942_0659 0.35 +1.7 654,364 - Synpcc7942_0659 0.36 -2.0 654,369 - Synpcc7942_0659 0.36 -0.2 654,410 + Synpcc7942_0659 0.39 -0.6 654,410 + Synpcc7942_0659 0.39 +0.7 654,410 + Synpcc7942_0659 0.39 +0.8 654,410 + Synpcc7942_0659 0.39 +3.0 654,410 + Synpcc7942_0659 0.39 +0.9 654,410 + Synpcc7942_0659 0.39 -1.3 654,410 + Synpcc7942_0659 0.39 +0.1 654,410 + Synpcc7942_0659 0.39 -1.8 654,415 + Synpcc7942_0659 0.39 +2.3 654,418 - Synpcc7942_0659 0.40 +4.6 654,418 - -0.6 654,418 - Synpcc7942_0659 0.40 +2.8 654,418 - Synpcc7942_0659 0.40 +0.7 654,418 - Synpcc7942_0659 0.40 +1.6 654,418 - Synpcc7942_0659 0.40 +2.0 654,418 - Synpcc7942_0659 0.40 +2.1 654,478 - Synpcc7942_0659 0.44 -0.6 654,491 + Synpcc7942_0659 0.45 +2.2 654,515 + Synpcc7942_0659 0.46 +2.1 654,534 - Synpcc7942_0659 0.48 +1.3 654,547 - Synpcc7942_0659 0.49 +0.1 654,548 - Synpcc7942_0659 0.49 +1.6 654,562 + Synpcc7942_0659 0.50 +2.5 654,562 + Synpcc7942_0659 0.50 -0.0 654,615 - Synpcc7942_0659 0.54 +3.3 654,615 - +3.8 654,626 + Synpcc7942_0659 0.54 +1.8 654,634 - Synpcc7942_0659 0.55 +0.2 654,634 - Synpcc7942_0659 0.55 +2.7 654,639 - Synpcc7942_0659 0.55 +3.1 654,671 - Synpcc7942_0659 0.57 +1.4 654,672 - Synpcc7942_0659 0.58 +2.8 654,687 + Synpcc7942_0659 0.59 +1.9 654,754 - Synpcc7942_0659 0.63 +2.0 654,755 - Synpcc7942_0659 0.63 +1.4 654,762 + Synpcc7942_0659 0.64 +0.2
Or see this region's nucleotide sequence