Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0621 and Synpcc7942_0622 are separated by 21 nucleotides Synpcc7942_0622 and trxB are separated by 59 nucleotides
Synpcc7942_0621: Synpcc7942_0621 - hypothetical protein, at 610,715 to 611,893
_0621
Synpcc7942_0622: Synpcc7942_0622 - ATPase, at 611,915 to 613,912
_0622
Synpcc7942_0623: trxB - thioredoxin reductase, at 613,972 to 615,351
trxB
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 610.939 kb on + strand, within Synpcc7942_0621 at 610.946 kb on - strand, within Synpcc7942_0621 at 610.979 kb on + strand, within Synpcc7942_0621 at 611.008 kb on + strand, within Synpcc7942_0621 at 611.016 kb on - strand, within Synpcc7942_0621 at 611.028 kb on + strand, within Synpcc7942_0621 at 611.028 kb on + strand, within Synpcc7942_0621 at 611.040 kb on + strand, within Synpcc7942_0621 at 611.040 kb on + strand, within Synpcc7942_0621 at 611.048 kb on - strand, within Synpcc7942_0621 at 611.051 kb on + strand, within Synpcc7942_0621 at 611.069 kb on - strand, within Synpcc7942_0621 at 611.137 kb on - strand, within Synpcc7942_0621 at 611.160 kb on - strand, within Synpcc7942_0621 at 611.192 kb on + strand, within Synpcc7942_0621 at 611.195 kb on - strand, within Synpcc7942_0621 at 611.205 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand at 611.219 kb on + strand, within Synpcc7942_0621 at 611.225 kb on + strand, within Synpcc7942_0621 at 611.225 kb on + strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.229 kb on - strand, within Synpcc7942_0621 at 611.261 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.314 kb on - strand, within Synpcc7942_0621 at 611.314 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.325 kb on + strand, within Synpcc7942_0621 at 611.327 kb on + strand, within Synpcc7942_0621 at 611.353 kb on + strand, within Synpcc7942_0621 at 611.353 kb on + strand, within Synpcc7942_0621 at 611.354 kb on + strand, within Synpcc7942_0621 at 611.360 kb on + strand, within Synpcc7942_0621 at 611.368 kb on + strand, within Synpcc7942_0621 at 611.423 kb on - strand, within Synpcc7942_0621 at 611.437 kb on + strand, within Synpcc7942_0621 at 611.445 kb on - strand, within Synpcc7942_0621 at 611.452 kb on - strand, within Synpcc7942_0621 at 611.452 kb on - strand, within Synpcc7942_0621 at 611.473 kb on + strand, within Synpcc7942_0621 at 611.473 kb on - strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.490 kb on + strand at 611.491 kb on - strand, within Synpcc7942_0621 at 611.511 kb on - strand, within Synpcc7942_0621 at 611.517 kb on + strand, within Synpcc7942_0621 at 611.530 kb on - strand, within Synpcc7942_0621 at 611.539 kb on + strand, within Synpcc7942_0621 at 611.546 kb on + strand, within Synpcc7942_0621 at 611.630 kb on + strand, within Synpcc7942_0621 at 611.645 kb on + strand, within Synpcc7942_0621 at 611.676 kb on + strand, within Synpcc7942_0621 at 611.676 kb on + strand, within Synpcc7942_0621 at 611.684 kb on - strand, within Synpcc7942_0621 at 611.684 kb on - strand, within Synpcc7942_0621 at 611.715 kb on - strand, within Synpcc7942_0621 at 611.757 kb on - strand, within Synpcc7942_0621 at 611.757 kb on - strand, within Synpcc7942_0621 at 611.808 kb on + strand at 611.862 kb on - strand at 611.864 kb on + strand at 611.872 kb on - strand at 611.884 kb on - strand at 611.886 kb on + strand at 611.889 kb on + strand at 611.894 kb on - strand at 611.896 kb on - strand at 611.915 kb on - strand at 611.973 kb on + strand at 611.992 kb on + strand at 612.072 kb on + strand at 612.268 kb on + strand, within Synpcc7942_0622 at 612.328 kb on + strand, within Synpcc7942_0622 at 612.364 kb on + strand, within Synpcc7942_0622 at 612.441 kb on - strand, within Synpcc7942_0622 at 612.458 kb on + strand, within Synpcc7942_0622 at 612.591 kb on + strand, within Synpcc7942_0622 at 612.599 kb on - strand, within Synpcc7942_0622 at 612.644 kb on - strand, within Synpcc7942_0622 at 612.653 kb on + strand, within Synpcc7942_0622 at 612.726 kb on + strand, within Synpcc7942_0622 at 612.726 kb on + strand, within Synpcc7942_0622 at 612.789 kb on - strand, within Synpcc7942_0622 at 612.801 kb on + strand, within Synpcc7942_0622 at 613.218 kb on + strand, within Synpcc7942_0622 at 613.223 kb on - strand, within Synpcc7942_0622 at 613.241 kb on - strand, within Synpcc7942_0622 at 613.248 kb on - strand, within Synpcc7942_0622 at 613.291 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.490 kb on - strand, within Synpcc7942_0622 at 613.519 kb on + strand, within Synpcc7942_0622 at 613.524 kb on + strand, within Synpcc7942_0622 at 613.527 kb on + strand, within Synpcc7942_0622 at 613.528 kb on - strand, within Synpcc7942_0622 at 613.626 kb on + strand, within Synpcc7942_0622 at 613.642 kb on - strand, within Synpcc7942_0622 at 613.770 kb on - strand at 613.811 kb on - strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.823 kb on - strand at 613.866 kb on - strand at 613.894 kb on + strand at 613.907 kb on + strand at 613.916 kb on + strand at 613.932 kb on - strand at 614.041 kb on + strand at 614.042 kb on - strand at 614.067 kb on - strand at 614.067 kb on - strand at 614.106 kb on + strand at 614.125 kb on - strand, within trxB at 614.142 kb on + strand, within trxB at 614.159 kb on - strand, within trxB at 614.170 kb on - strand, within trxB at 614.180 kb on - strand, within trxB at 614.187 kb on + strand, within trxB at 614.207 kb on + strand, within trxB at 614.214 kb on + strand, within trxB at 614.337 kb on + strand, within trxB at 614.394 kb on + strand at 614.606 kb on - strand, within trxB at 614.610 kb on + strand, within trxB at 614.622 kb on + strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.780 kb on - strand, within trxB at 614.821 kb on + strand, within trxB at 614.899 kb on - strand, within trxB
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 610,939 + Synpcc7942_0621 0.19 -2.9 610,946 - Synpcc7942_0621 0.20 -0.0 610,979 + Synpcc7942_0621 0.22 +1.2 611,008 + Synpcc7942_0621 0.25 -2.9 611,016 - Synpcc7942_0621 0.26 -1.7 611,028 + Synpcc7942_0621 0.27 -1.4 611,028 + Synpcc7942_0621 0.27 +1.2 611,040 + Synpcc7942_0621 0.28 +0.8 611,040 + Synpcc7942_0621 0.28 +1.1 611,048 - Synpcc7942_0621 0.28 -0.3 611,051 + Synpcc7942_0621 0.28 +1.4 611,069 - Synpcc7942_0621 0.30 -0.8 611,137 - Synpcc7942_0621 0.36 -1.2 611,160 - Synpcc7942_0621 0.38 -0.4 611,192 + Synpcc7942_0621 0.40 +1.7 611,195 - Synpcc7942_0621 0.41 -0.0 611,205 + Synpcc7942_0621 0.42 -2.8 611,219 + Synpcc7942_0621 0.43 -0.0 611,219 + Synpcc7942_0621 0.43 -0.9 611,219 + Synpcc7942_0621 0.43 +0.4 611,219 + Synpcc7942_0621 0.43 -1.3 611,219 + +2.0 611,219 + Synpcc7942_0621 0.43 +1.4 611,225 + Synpcc7942_0621 0.43 -0.6 611,225 + Synpcc7942_0621 0.43 -0.3 611,227 - Synpcc7942_0621 0.43 -0.5 611,227 - Synpcc7942_0621 0.43 +2.3 611,227 - Synpcc7942_0621 0.43 +1.2 611,227 - Synpcc7942_0621 0.43 -0.7 611,227 - Synpcc7942_0621 0.43 +2.5 611,227 - Synpcc7942_0621 0.43 -0.0 611,227 - Synpcc7942_0621 0.43 -3.4 611,227 - Synpcc7942_0621 0.43 +0.4 611,227 - Synpcc7942_0621 0.43 -2.0 611,227 - Synpcc7942_0621 0.43 -1.3 611,227 - Synpcc7942_0621 0.43 -0.1 611,227 - Synpcc7942_0621 0.43 +1.0 611,227 - Synpcc7942_0621 0.43 +2.9 611,229 - Synpcc7942_0621 0.44 -0.0 611,261 + Synpcc7942_0621 0.46 -1.7 611,306 + Synpcc7942_0621 0.50 +0.1 611,306 + Synpcc7942_0621 0.50 +2.4 611,306 + Synpcc7942_0621 0.50 +0.3 611,314 - Synpcc7942_0621 0.51 +1.8 611,314 - Synpcc7942_0621 0.51 +0.7 611,321 - Synpcc7942_0621 0.51 +2.1 611,321 - Synpcc7942_0621 0.51 +0.4 611,321 - Synpcc7942_0621 0.51 +0.3 611,325 + Synpcc7942_0621 0.52 +1.4 611,327 + Synpcc7942_0621 0.52 -0.1 611,353 + Synpcc7942_0621 0.54 +3.0 611,353 + Synpcc7942_0621 0.54 +1.4 611,354 + Synpcc7942_0621 0.54 +0.9 611,360 + Synpcc7942_0621 0.55 -1.5 611,368 + Synpcc7942_0621 0.55 -1.4 611,423 - Synpcc7942_0621 0.60 +0.4 611,437 + Synpcc7942_0621 0.61 +5.1 611,445 - Synpcc7942_0621 0.62 +0.7 611,452 - Synpcc7942_0621 0.63 -0.1 611,452 - Synpcc7942_0621 0.63 -0.6 611,473 + Synpcc7942_0621 0.64 -2.0 611,473 - Synpcc7942_0621 0.64 +2.7 611,475 + Synpcc7942_0621 0.64 -1.7 611,475 + Synpcc7942_0621 0.64 -0.6 611,475 + Synpcc7942_0621 0.64 +0.2 611,490 + -0.3 611,491 - Synpcc7942_0621 0.66 -1.6 611,511 - Synpcc7942_0621 0.68 +3.6 611,517 + Synpcc7942_0621 0.68 -2.5 611,530 - Synpcc7942_0621 0.69 -0.7 611,539 + Synpcc7942_0621 0.70 -0.1 611,546 + Synpcc7942_0621 0.70 +0.5 611,630 + Synpcc7942_0621 0.78 +4.6 611,645 + Synpcc7942_0621 0.79 -1.5 611,676 + Synpcc7942_0621 0.82 -1.4 611,676 + Synpcc7942_0621 0.82 -2.8 611,684 - Synpcc7942_0621 0.82 +2.1 611,684 - Synpcc7942_0621 0.82 -2.4 611,715 - Synpcc7942_0621 0.85 +0.8 611,757 - Synpcc7942_0621 0.88 +1.2 611,757 - Synpcc7942_0621 0.88 -0.8 611,808 + +1.9 611,862 - +1.1 611,864 + -3.0 611,872 - +2.5 611,884 - -1.0 611,886 + -3.6 611,889 + -1.7 611,894 - -0.5 611,896 - -3.8 611,915 - -2.6 611,973 + -1.7 611,992 + -3.3 612,072 + -2.9 612,268 + Synpcc7942_0622 0.18 -3.2 612,328 + Synpcc7942_0622 0.21 -2.5 612,364 + Synpcc7942_0622 0.22 -1.6 612,441 - Synpcc7942_0622 0.26 -2.5 612,458 + Synpcc7942_0622 0.27 -1.9 612,591 + Synpcc7942_0622 0.34 -2.3 612,599 - Synpcc7942_0622 0.34 -2.4 612,644 - Synpcc7942_0622 0.36 -4.3 612,653 + Synpcc7942_0622 0.37 -1.5 612,726 + Synpcc7942_0622 0.41 -3.9 612,726 + Synpcc7942_0622 0.41 -3.0 612,789 - Synpcc7942_0622 0.44 -2.4 612,801 + Synpcc7942_0622 0.44 -1.6 613,218 + Synpcc7942_0622 0.65 -2.1 613,223 - Synpcc7942_0622 0.65 -1.7 613,241 - Synpcc7942_0622 0.66 -3.5 613,248 - Synpcc7942_0622 0.67 -4.3 613,291 - Synpcc7942_0622 0.69 -3.5 613,467 - Synpcc7942_0622 0.78 -3.0 613,467 - Synpcc7942_0622 0.78 -0.8 613,490 - Synpcc7942_0622 0.79 -1.8 613,519 + Synpcc7942_0622 0.80 -3.1 613,524 + Synpcc7942_0622 0.81 -1.5 613,527 + Synpcc7942_0622 0.81 -0.8 613,528 - Synpcc7942_0622 0.81 -3.5 613,626 + Synpcc7942_0622 0.86 -5.0 613,642 - Synpcc7942_0622 0.86 +0.2 613,770 - -3.6 613,811 - -2.3 613,815 + -1.8 613,815 + -4.7 613,815 + -2.2 613,823 - -1.9 613,866 - -0.6 613,894 + -4.3 613,907 + +0.6 613,916 + -0.0 613,932 - +1.2 614,041 + -1.7 614,042 - +1.6 614,067 - +1.5 614,067 - +2.4 614,106 + +4.5 614,125 - trxB Synpcc7942_0623 0.11 +2.3 614,142 + trxB Synpcc7942_0623 0.12 -0.3 614,159 - trxB Synpcc7942_0623 0.14 +1.3 614,170 - trxB Synpcc7942_0623 0.14 +0.8 614,180 - trxB Synpcc7942_0623 0.15 +3.9 614,187 + trxB Synpcc7942_0623 0.16 +0.5 614,207 + trxB Synpcc7942_0623 0.17 +2.3 614,214 + trxB Synpcc7942_0623 0.18 -0.1 614,337 + trxB Synpcc7942_0623 0.26 +1.4 614,394 + +1.6 614,606 - trxB Synpcc7942_0623 0.46 +0.6 614,610 + trxB Synpcc7942_0623 0.46 +4.3 614,622 + trxB Synpcc7942_0623 0.47 -0.2 614,630 - trxB Synpcc7942_0623 0.48 +7.2 614,630 - trxB Synpcc7942_0623 0.48 +0.5 614,630 - trxB Synpcc7942_0623 0.48 +0.6 614,630 - trxB Synpcc7942_0623 0.48 +3.2 614,780 - trxB Synpcc7942_0623 0.59 +3.5 614,821 + trxB Synpcc7942_0623 0.62 +3.0 614,899 - trxB Synpcc7942_0623 0.67 +0.3
Or see this region's nucleotide sequence