Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0602 and glgC are separated by 4 nucleotides glgC and rpe are separated by 138 nucleotides rpe and Synpcc7942_0605 are separated by 77 nucleotides
Synpcc7942_0602: Synpcc7942_0602 - hypothetical protein, at 590,846 to 591,454
_0602
Synpcc7942_0603: glgC - glucose-1-phosphate adenylyltransferase, at 591,459 to 592,751
glgC
Synpcc7942_0604: rpe - ribulose-phosphate 3-epimerase, at 592,890 to 593,633
rpe
Synpcc7942_0605: Synpcc7942_0605 - hypothetical protein, at 593,711 to 594,694
_0605
Position (kb) 591
592
593 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 590.562 kb on + strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.598 kb on + strand at 590.828 kb on + strand at 590.865 kb on + strand at 590.902 kb on + strand at 590.974 kb on + strand, within Synpcc7942_0602 at 591.002 kb on + strand, within Synpcc7942_0602 at 591.002 kb on - strand, within Synpcc7942_0602 at 591.004 kb on + strand, within Synpcc7942_0602 at 591.010 kb on - strand, within Synpcc7942_0602 at 591.012 kb on - strand, within Synpcc7942_0602 at 591.170 kb on + strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.303 kb on - strand, within Synpcc7942_0602 at 591.308 kb on - strand, within Synpcc7942_0602 at 591.382 kb on + strand, within Synpcc7942_0602 at 591.390 kb on - strand, within Synpcc7942_0602 at 591.464 kb on - strand at 591.648 kb on + strand, within glgC at 591.795 kb on - strand, within glgC at 591.872 kb on - strand, within glgC at 592.010 kb on - strand, within glgC at 592.383 kb on - strand, within glgC at 592.570 kb on + strand, within glgC at 592.769 kb on - strand at 592.769 kb on - strand at 592.807 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.845 kb on - strand at 592.850 kb on - strand at 592.852 kb on + strand at 592.861 kb on - strand at 592.863 kb on + strand at 592.871 kb on - strand at 592.873 kb on + strand at 592.873 kb on + strand at 592.880 kb on + strand at 592.887 kb on - strand at 592.888 kb on - strand at 592.896 kb on - strand at 592.908 kb on - strand at 592.947 kb on - strand at 592.947 kb on - strand at 593.636 kb on - strand at 593.636 kb on - strand at 593.646 kb on + strand at 593.654 kb on - strand at 593.661 kb on - strand at 593.701 kb on + strand at 593.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 590,562 + -1.2 590,569 - -3.5 590,569 - +2.9 590,569 - +1.9 590,598 + +0.3 590,828 + -2.8 590,865 + -3.2 590,902 + -2.2 590,974 + Synpcc7942_0602 0.21 -0.8 591,002 + Synpcc7942_0602 0.26 -1.7 591,002 - Synpcc7942_0602 0.26 -2.6 591,004 + Synpcc7942_0602 0.26 -2.4 591,010 - Synpcc7942_0602 0.27 -1.4 591,012 - Synpcc7942_0602 0.27 -3.9 591,170 + Synpcc7942_0602 0.53 -1.3 591,281 - Synpcc7942_0602 0.71 -1.5 591,281 - Synpcc7942_0602 0.71 -2.6 591,299 - Synpcc7942_0602 0.74 -2.7 591,299 - Synpcc7942_0602 0.74 +0.1 591,303 - Synpcc7942_0602 0.75 -1.5 591,308 - Synpcc7942_0602 0.76 -0.6 591,382 + Synpcc7942_0602 0.88 -2.2 591,390 - Synpcc7942_0602 0.89 -0.6 591,464 - +1.1 591,648 + glgC Synpcc7942_0603 0.15 -2.7 591,795 - glgC Synpcc7942_0603 0.26 -2.0 591,872 - glgC Synpcc7942_0603 0.32 -0.8 592,010 - glgC Synpcc7942_0603 0.43 -1.3 592,383 - glgC Synpcc7942_0603 0.71 -1.8 592,570 + glgC Synpcc7942_0603 0.86 -0.3 592,769 - +1.1 592,769 - +0.4 592,807 + -2.9 592,837 + +2.2 592,837 + -3.6 592,837 + +0.6 592,845 - +6.3 592,850 - +1.0 592,852 + +2.3 592,861 - +2.6 592,863 + -0.9 592,871 - +2.4 592,873 + -2.2 592,873 + +2.6 592,880 + +1.7 592,887 - +1.1 592,888 - -1.2 592,896 - +3.3 592,908 - +2.6 592,947 - +1.4 592,947 - +1.5 593,636 - +0.8 593,636 - +1.2 593,646 + -2.1 593,654 - -0.8 593,661 - -0.5 593,701 + -1.5 593,703 - -1.5
Or see this region's nucleotide sequence