Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiG and Synpcc7942_0577 are separated by 83 nucleotides Synpcc7942_0577 and sqdB are separated by 93 nucleotides sqdB and sqdX are separated by 15 nucleotides
Synpcc7942_0576: thiG - thiazole synthase, at 557,200 to 558,060
thiG
Synpcc7942_0577: Synpcc7942_0577 - hypothetical protein, at 558,144 to 558,314
_0577
Synpcc7942_0578: sqdB - UDP-sulfoquinovose synthase, at 558,408 to 559,616
sqdB
Synpcc7942_0579: sqdX - sulfolipid sulfoquinovosyldiacylglycerol biosynthesis protein, at 559,632 to 560,765
sqdX
Position (kb) 558
559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 558.053 kb on + strand at 558.084 kb on + strand at 558.095 kb on + strand at 558.101 kb on - strand at 558.108 kb on - strand at 558.108 kb on - strand at 558.108 kb on - strand at 558.114 kb on - strand at 558.116 kb on + strand at 558.118 kb on + strand at 558.118 kb on + strand at 558.118 kb on + strand at 558.119 kb on - strand at 558.121 kb on + strand at 558.126 kb on - strand at 558.129 kb on - strand at 558.129 kb on - strand at 558.129 kb on - strand at 558.131 kb on - strand at 558.136 kb on - strand at 558.147 kb on + strand at 558.147 kb on + strand at 558.147 kb on + strand at 558.154 kb on - strand at 558.155 kb on - strand at 558.155 kb on - strand at 558.155 kb on - strand at 558.157 kb on - strand at 558.165 kb on + strand, within Synpcc7942_0577 at 558.173 kb on + strand, within Synpcc7942_0577 at 558.173 kb on - strand, within Synpcc7942_0577 at 558.202 kb on - strand, within Synpcc7942_0577 at 558.210 kb on + strand, within Synpcc7942_0577 at 558.220 kb on + strand, within Synpcc7942_0577 at 558.220 kb on + strand, within Synpcc7942_0577 at 558.223 kb on - strand, within Synpcc7942_0577 at 558.228 kb on - strand, within Synpcc7942_0577 at 558.228 kb on - strand at 558.256 kb on + strand, within Synpcc7942_0577 at 558.282 kb on + strand, within Synpcc7942_0577 at 558.311 kb on + strand at 558.321 kb on - strand at 558.324 kb on - strand at 558.332 kb on + strand at 558.378 kb on + strand at 558.383 kb on + strand at 558.406 kb on - strand at 558.545 kb on - strand, within sqdB at 558.650 kb on + strand, within sqdB at 558.725 kb on + strand, within sqdB at 558.766 kb on - strand, within sqdB at 558.791 kb on - strand, within sqdB at 558.849 kb on - strand, within sqdB at 558.978 kb on - strand, within sqdB at 559.146 kb on + strand, within sqdB at 559.154 kb on - strand, within sqdB at 559.217 kb on - strand, within sqdB at 559.311 kb on - strand, within sqdB at 559.332 kb on - strand, within sqdB at 559.470 kb on + strand, within sqdB at 559.720 kb on + strand at 559.822 kb on - strand, within sqdX at 559.882 kb on - strand, within sqdX at 559.911 kb on + strand, within sqdX at 559.943 kb on + strand, within sqdX at 560.000 kb on + strand, within sqdX at 560.077 kb on + strand, within sqdX at 560.129 kb on + strand, within sqdX at 560.260 kb on - strand, within sqdX at 560.309 kb on + strand, within sqdX at 560.329 kb on + strand, within sqdX at 560.358 kb on - strand, within sqdX at 560.429 kb on - strand, within sqdX at 560.615 kb on + strand, within sqdX
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 558,053 + -0.0 558,084 + -1.3 558,095 + -2.1 558,101 - +0.7 558,108 - -2.0 558,108 - +0.6 558,108 - -1.8 558,114 - +1.0 558,116 + -1.7 558,118 + -1.5 558,118 + -1.3 558,118 + -2.3 558,119 - -2.2 558,121 + +1.0 558,126 - -1.5 558,129 - -0.3 558,129 - -1.5 558,129 - -1.5 558,131 - +1.6 558,136 - -0.2 558,147 + -0.4 558,147 + -0.0 558,147 + -0.6 558,154 - +1.3 558,155 - -2.0 558,155 - -2.3 558,155 - +1.9 558,157 - -2.0 558,165 + Synpcc7942_0577 0.12 -0.7 558,173 + Synpcc7942_0577 0.17 +2.4 558,173 - Synpcc7942_0577 0.17 -1.1 558,202 - Synpcc7942_0577 0.34 -1.3 558,210 + Synpcc7942_0577 0.39 +3.2 558,220 + Synpcc7942_0577 0.44 -2.0 558,220 + Synpcc7942_0577 0.44 -1.7 558,223 - Synpcc7942_0577 0.46 +2.1 558,228 - Synpcc7942_0577 0.49 +1.8 558,228 - +0.0 558,256 + Synpcc7942_0577 0.65 +0.2 558,282 + Synpcc7942_0577 0.81 +0.7 558,311 + -1.9 558,321 - -1.3 558,324 - -1.7 558,332 + -1.8 558,378 + -2.9 558,383 + -2.5 558,406 - +0.2 558,545 - sqdB Synpcc7942_0578 0.11 -1.7 558,650 + sqdB Synpcc7942_0578 0.20 -2.5 558,725 + sqdB Synpcc7942_0578 0.26 -2.7 558,766 - sqdB Synpcc7942_0578 0.30 +0.0 558,791 - sqdB Synpcc7942_0578 0.32 -1.9 558,849 - sqdB Synpcc7942_0578 0.36 -2.8 558,978 - sqdB Synpcc7942_0578 0.47 -2.7 559,146 + sqdB Synpcc7942_0578 0.61 -1.0 559,154 - sqdB Synpcc7942_0578 0.62 -1.3 559,217 - sqdB Synpcc7942_0578 0.67 -1.7 559,311 - sqdB Synpcc7942_0578 0.75 +1.2 559,332 - sqdB Synpcc7942_0578 0.76 -2.9 559,470 + sqdB Synpcc7942_0578 0.88 -2.0 559,720 + -1.3 559,822 - sqdX Synpcc7942_0579 0.17 -1.1 559,882 - sqdX Synpcc7942_0579 0.22 +3.2 559,911 + sqdX Synpcc7942_0579 0.25 -2.0 559,943 + sqdX Synpcc7942_0579 0.27 -1.5 560,000 + sqdX Synpcc7942_0579 0.32 -2.5 560,077 + sqdX Synpcc7942_0579 0.39 -1.8 560,129 + sqdX Synpcc7942_0579 0.44 -1.0 560,260 - sqdX Synpcc7942_0579 0.55 -1.8 560,309 + sqdX Synpcc7942_0579 0.60 -1.5 560,329 + sqdX Synpcc7942_0579 0.61 -2.0 560,358 - sqdX Synpcc7942_0579 0.64 -1.7 560,429 - sqdX Synpcc7942_0579 0.70 -2.0 560,615 + sqdX Synpcc7942_0579 0.87 -1.8
Or see this region's nucleotide sequence