Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0493 and Synpcc7942_0494 are separated by 179 nucleotides Synpcc7942_0494 and Synpcc7942_0495 overlap by 4 nucleotides Synpcc7942_0495 and Synpcc7942_0496 are separated by 116 nucleotides Synpcc7942_0496 and Synpcc7942_0497 are separated by 4 nucleotides
Synpcc7942_0493: Synpcc7942_0493 - hypothetical protein, at 480,967 to 482,451
_0493
Synpcc7942_0494: Synpcc7942_0494 - hypothetical protein, at 482,631 to 482,984
_0494
Synpcc7942_0495: Synpcc7942_0495 - hypothetical protein, at 482,981 to 483,517
_0495
Synpcc7942_0496: Synpcc7942_0496 - hypothetical protein, at 483,634 to 484,323
_0496
Synpcc7942_0497: Synpcc7942_0497 - hypothetical protein, at 484,328 to 484,504
_0497
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 481.982 kb on - strand, within Synpcc7942_0493 at 481.987 kb on - strand, within Synpcc7942_0493 at 482.030 kb on - strand, within Synpcc7942_0493 at 482.071 kb on + strand, within Synpcc7942_0493 at 482.084 kb on - strand, within Synpcc7942_0493 at 482.091 kb on + strand, within Synpcc7942_0493 at 482.100 kb on - strand, within Synpcc7942_0493 at 482.156 kb on - strand, within Synpcc7942_0493 at 482.178 kb on - strand, within Synpcc7942_0493 at 482.181 kb on - strand, within Synpcc7942_0493 at 482.181 kb on - strand, within Synpcc7942_0493 at 482.189 kb on + strand, within Synpcc7942_0493 at 482.218 kb on + strand, within Synpcc7942_0493 at 482.228 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand, within Synpcc7942_0493 at 482.239 kb on + strand at 482.239 kb on + strand, within Synpcc7942_0493 at 482.247 kb on - strand, within Synpcc7942_0493 at 482.252 kb on + strand, within Synpcc7942_0493 at 482.252 kb on + strand at 482.252 kb on + strand, within Synpcc7942_0493 at 482.286 kb on + strand, within Synpcc7942_0493 at 482.318 kb on - strand at 482.318 kb on - strand at 482.318 kb on - strand at 482.362 kb on + strand at 482.386 kb on + strand at 482.400 kb on - strand at 482.445 kb on + strand at 482.445 kb on + strand at 482.462 kb on - strand at 482.470 kb on + strand at 482.486 kb on + strand at 482.488 kb on - strand at 482.503 kb on - strand at 482.508 kb on - strand at 482.524 kb on + strand at 482.608 kb on - strand at 482.659 kb on + strand at 482.667 kb on - strand, within Synpcc7942_0494 at 482.667 kb on - strand, within Synpcc7942_0494 at 482.687 kb on + strand, within Synpcc7942_0494 at 482.818 kb on + strand, within Synpcc7942_0494 at 482.835 kb on + strand, within Synpcc7942_0494 at 482.835 kb on + strand, within Synpcc7942_0494 at 482.838 kb on - strand, within Synpcc7942_0494 at 482.842 kb on + strand, within Synpcc7942_0494 at 482.842 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.845 kb on + strand, within Synpcc7942_0494 at 482.847 kb on + strand, within Synpcc7942_0494 at 482.853 kb on - strand, within Synpcc7942_0494 at 482.886 kb on + strand, within Synpcc7942_0494 at 482.908 kb on + strand, within Synpcc7942_0494 at 482.921 kb on - strand, within Synpcc7942_0494 at 482.928 kb on + strand, within Synpcc7942_0494 at 482.928 kb on - strand, within Synpcc7942_0494 at 482.931 kb on - strand, within Synpcc7942_0494 at 482.934 kb on + strand, within Synpcc7942_0494 at 482.934 kb on + strand, within Synpcc7942_0494 at 482.939 kb on + strand, within Synpcc7942_0494 at 482.952 kb on - strand at 482.975 kb on + strand at 482.984 kb on + strand at 482.986 kb on + strand at 482.992 kb on - strand at 482.992 kb on - strand at 483.050 kb on - strand, within Synpcc7942_0495 at 483.085 kb on + strand, within Synpcc7942_0495 at 483.102 kb on - strand, within Synpcc7942_0495 at 483.106 kb on + strand, within Synpcc7942_0495 at 483.106 kb on + strand, within Synpcc7942_0495 at 483.114 kb on - strand, within Synpcc7942_0495 at 483.114 kb on - strand at 483.119 kb on - strand at 483.133 kb on + strand, within Synpcc7942_0495 at 483.148 kb on + strand, within Synpcc7942_0495 at 483.170 kb on - strand, within Synpcc7942_0495 at 483.170 kb on - strand, within Synpcc7942_0495 at 483.325 kb on - strand, within Synpcc7942_0495 at 483.435 kb on - strand, within Synpcc7942_0495 at 483.489 kb on + strand at 483.504 kb on - strand at 483.512 kb on - strand at 483.549 kb on + strand at 483.587 kb on - strand at 483.638 kb on + strand at 483.638 kb on + strand at 483.638 kb on + strand at 483.639 kb on - strand at 483.640 kb on - strand at 483.646 kb on - strand at 483.651 kb on - strand at 483.655 kb on + strand at 483.663 kb on - strand at 483.682 kb on - strand at 483.689 kb on + strand at 483.702 kb on - strand at 483.713 kb on + strand, within Synpcc7942_0496 at 483.721 kb on - strand, within Synpcc7942_0496 at 483.721 kb on - strand, within Synpcc7942_0496 at 483.759 kb on + strand, within Synpcc7942_0496 at 483.778 kb on - strand, within Synpcc7942_0496 at 483.782 kb on + strand, within Synpcc7942_0496 at 483.782 kb on + strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.790 kb on - strand, within Synpcc7942_0496 at 483.817 kb on - strand, within Synpcc7942_0496 at 483.852 kb on + strand, within Synpcc7942_0496 at 483.907 kb on + strand, within Synpcc7942_0496 at 483.980 kb on + strand, within Synpcc7942_0496 at 483.980 kb on + strand, within Synpcc7942_0496 at 483.982 kb on + strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.988 kb on - strand, within Synpcc7942_0496 at 483.990 kb on + strand, within Synpcc7942_0496 at 483.998 kb on - strand, within Synpcc7942_0496 at 483.998 kb on - strand, within Synpcc7942_0496 at 484.010 kb on - strand, within Synpcc7942_0496 at 484.079 kb on + strand, within Synpcc7942_0496 at 484.111 kb on + strand, within Synpcc7942_0496 at 484.111 kb on + strand, within Synpcc7942_0496 at 484.119 kb on - strand, within Synpcc7942_0496 at 484.134 kb on - strand, within Synpcc7942_0496 at 484.183 kb on + strand at 484.196 kb on + strand, within Synpcc7942_0496 at 484.240 kb on + strand, within Synpcc7942_0496 at 484.248 kb on - strand, within Synpcc7942_0496 at 484.301 kb on + strand at 484.301 kb on + strand at 484.301 kb on + strand at 484.301 kb on + strand at 484.308 kb on + strand at 484.309 kb on - strand at 484.309 kb on - strand at 484.325 kb on + strand at 484.325 kb on + strand at 484.333 kb on - strand at 484.333 kb on - strand at 484.333 kb on - strand at 484.339 kb on - strand at 484.344 kb on + strand at 484.367 kb on - strand, within Synpcc7942_0497 at 484.367 kb on - strand, within Synpcc7942_0497 at 484.369 kb on + strand, within Synpcc7942_0497 at 484.376 kb on + strand, within Synpcc7942_0497 at 484.386 kb on + strand, within Synpcc7942_0497 at 484.389 kb on - strand, within Synpcc7942_0497 at 484.394 kb on - strand, within Synpcc7942_0497 at 484.446 kb on - strand, within Synpcc7942_0497 at 484.451 kb on - strand, within Synpcc7942_0497 at 484.474 kb on + strand, within Synpcc7942_0497 at 484.475 kb on + strand, within Synpcc7942_0497 at 484.482 kb on - strand, within Synpcc7942_0497 at 484.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 481,982 - Synpcc7942_0493 0.68 +0.5 481,987 - Synpcc7942_0493 0.69 +1.8 482,030 - Synpcc7942_0493 0.72 -1.1 482,071 + Synpcc7942_0493 0.74 +0.3 482,084 - Synpcc7942_0493 0.75 -1.7 482,091 + Synpcc7942_0493 0.76 -1.9 482,100 - Synpcc7942_0493 0.76 +1.6 482,156 - Synpcc7942_0493 0.80 +2.3 482,178 - Synpcc7942_0493 0.82 -1.8 482,181 - Synpcc7942_0493 0.82 +1.1 482,181 - Synpcc7942_0493 0.82 +0.9 482,189 + Synpcc7942_0493 0.82 +0.5 482,218 + Synpcc7942_0493 0.84 +3.5 482,228 + Synpcc7942_0493 0.85 +0.7 482,239 + Synpcc7942_0493 0.86 -0.8 482,239 + Synpcc7942_0493 0.86 -0.7 482,239 + -1.2 482,239 + Synpcc7942_0493 0.86 +0.7 482,247 - Synpcc7942_0493 0.86 -0.2 482,252 + Synpcc7942_0493 0.87 -0.4 482,252 + -1.9 482,252 + Synpcc7942_0493 0.87 +0.6 482,286 + Synpcc7942_0493 0.89 +1.1 482,318 - +1.0 482,318 - -1.5 482,318 - -1.6 482,362 + -3.4 482,386 + -3.0 482,400 - -0.7 482,445 + -0.6 482,445 + -1.7 482,462 - +2.9 482,470 + -1.0 482,486 + -1.8 482,488 - -1.4 482,503 - +0.4 482,508 - +0.6 482,524 + -1.2 482,608 - +1.3 482,659 + -1.6 482,667 - Synpcc7942_0494 0.10 +0.9 482,667 - Synpcc7942_0494 0.10 +0.8 482,687 + Synpcc7942_0494 0.16 -2.2 482,818 + Synpcc7942_0494 0.53 -1.3 482,835 + Synpcc7942_0494 0.58 -2.3 482,835 + Synpcc7942_0494 0.58 +0.4 482,838 - Synpcc7942_0494 0.58 -0.8 482,842 + Synpcc7942_0494 0.60 +2.9 482,842 + Synpcc7942_0494 0.60 -2.4 482,845 + Synpcc7942_0494 0.60 -1.4 482,845 + Synpcc7942_0494 0.60 +1.8 482,845 + Synpcc7942_0494 0.60 +0.2 482,847 + Synpcc7942_0494 0.61 -0.9 482,853 - Synpcc7942_0494 0.63 -1.7 482,886 + Synpcc7942_0494 0.72 +0.9 482,908 + Synpcc7942_0494 0.78 +3.1 482,921 - Synpcc7942_0494 0.82 +1.5 482,928 + Synpcc7942_0494 0.84 +1.4 482,928 - Synpcc7942_0494 0.84 +3.6 482,931 - Synpcc7942_0494 0.85 -2.1 482,934 + Synpcc7942_0494 0.86 +0.5 482,934 + Synpcc7942_0494 0.86 -0.9 482,939 + Synpcc7942_0494 0.87 -0.9 482,952 - +0.2 482,975 + +0.2 482,984 + -0.7 482,986 + +0.7 482,992 - -0.2 482,992 - +1.2 483,050 - Synpcc7942_0495 0.13 -1.5 483,085 + Synpcc7942_0495 0.19 +1.6 483,102 - Synpcc7942_0495 0.23 +2.3 483,106 + Synpcc7942_0495 0.23 +2.6 483,106 + Synpcc7942_0495 0.23 -2.0 483,114 - Synpcc7942_0495 0.25 +0.5 483,114 - +1.1 483,119 - +2.1 483,133 + Synpcc7942_0495 0.28 +0.3 483,148 + Synpcc7942_0495 0.31 -1.8 483,170 - Synpcc7942_0495 0.35 +0.9 483,170 - Synpcc7942_0495 0.35 +1.6 483,325 - Synpcc7942_0495 0.64 -2.0 483,435 - Synpcc7942_0495 0.85 +1.9 483,489 + -0.9 483,504 - +1.4 483,512 - -2.4 483,549 + -0.7 483,587 - +0.7 483,638 + -0.1 483,638 + +1.6 483,638 + +1.2 483,639 - +2.0 483,640 - -2.0 483,646 - -0.9 483,651 - -0.9 483,655 + -2.2 483,663 - +0.8 483,682 - +0.6 483,689 + +2.6 483,702 - -0.3 483,713 + Synpcc7942_0496 0.11 +0.1 483,721 - Synpcc7942_0496 0.13 -1.1 483,721 - Synpcc7942_0496 0.13 -1.7 483,759 + Synpcc7942_0496 0.18 +0.3 483,778 - Synpcc7942_0496 0.21 +0.2 483,782 + Synpcc7942_0496 0.21 -1.2 483,782 + Synpcc7942_0496 0.21 +0.6 483,790 - Synpcc7942_0496 0.23 -1.5 483,790 - Synpcc7942_0496 0.23 -0.5 483,790 - Synpcc7942_0496 0.23 +1.4 483,817 - Synpcc7942_0496 0.27 -0.9 483,852 + Synpcc7942_0496 0.32 +0.1 483,907 + Synpcc7942_0496 0.40 +1.4 483,980 + Synpcc7942_0496 0.50 -1.8 483,980 + Synpcc7942_0496 0.50 -1.2 483,982 + Synpcc7942_0496 0.50 -0.9 483,988 - Synpcc7942_0496 0.51 +1.5 483,988 - Synpcc7942_0496 0.51 -0.9 483,988 - Synpcc7942_0496 0.51 +0.4 483,990 + Synpcc7942_0496 0.52 +2.5 483,998 - Synpcc7942_0496 0.53 +2.1 483,998 - Synpcc7942_0496 0.53 -0.5 484,010 - Synpcc7942_0496 0.54 +0.1 484,079 + Synpcc7942_0496 0.64 +0.2 484,111 + Synpcc7942_0496 0.69 -1.5 484,111 + Synpcc7942_0496 0.69 -1.1 484,119 - Synpcc7942_0496 0.70 -2.0 484,134 - Synpcc7942_0496 0.72 +0.5 484,183 + -0.5 484,196 + Synpcc7942_0496 0.81 +0.4 484,240 + Synpcc7942_0496 0.88 -0.9 484,248 - Synpcc7942_0496 0.89 +0.7 484,301 + -1.8 484,301 + +0.9 484,301 + +2.5 484,301 + +1.2 484,308 + +2.1 484,309 - +0.7 484,309 - +0.0 484,325 + -1.4 484,325 + -0.5 484,333 - +0.0 484,333 - +0.9 484,333 - +2.5 484,339 - +0.7 484,344 + -0.7 484,367 - Synpcc7942_0497 0.22 -1.3 484,367 - Synpcc7942_0497 0.22 -2.8 484,369 + Synpcc7942_0497 0.23 +3.4 484,376 + Synpcc7942_0497 0.27 +1.0 484,386 + Synpcc7942_0497 0.33 -0.5 484,389 - Synpcc7942_0497 0.34 +0.4 484,394 - Synpcc7942_0497 0.37 +0.3 484,446 - Synpcc7942_0497 0.67 -2.1 484,451 - Synpcc7942_0497 0.69 +0.1 484,474 + Synpcc7942_0497 0.82 -1.1 484,475 + Synpcc7942_0497 0.83 +0.6 484,482 - Synpcc7942_0497 0.87 +2.0 484,490 + +0.3
Or see this region's nucleotide sequence