Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0462 and Synpcc7942_0463 overlap by 1 nucleotides Synpcc7942_0463 and Synpcc7942_0464 are separated by 90 nucleotides Synpcc7942_0464 and Synpcc7942_0465 are separated by 88 nucleotides Synpcc7942_0465 and Synpcc7942_0466 are separated by 89 nucleotides
Synpcc7942_0462: Synpcc7942_0462 - hypothetical protein, at 449,370 to 449,957
_0462
Synpcc7942_0463: Synpcc7942_0463 - protein tyrosine phosphatase, at 449,957 to 450,448
_0463
Synpcc7942_0464: Synpcc7942_0464 - hypothetical protein, at 450,539 to 450,934
_0464
Synpcc7942_0465: Synpcc7942_0465 - hypothetical protein, at 451,023 to 451,748
_0465
Synpcc7942_0466: Synpcc7942_0466 - Cellulose synthase (UDP-forming), at 451,838 to 454,087
_0466
Position (kb) 450
451 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.610 kb on - strand, within Synpcc7942_0462 at 449.610 kb on - strand, within Synpcc7942_0462 at 449.617 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.645 kb on - strand, within Synpcc7942_0462 at 449.645 kb on - strand, within Synpcc7942_0462 at 449.652 kb on + strand, within Synpcc7942_0462 at 449.664 kb on + strand, within Synpcc7942_0462 at 449.671 kb on + strand, within Synpcc7942_0462 at 449.672 kb on - strand, within Synpcc7942_0462 at 449.672 kb on - strand, within Synpcc7942_0462 at 449.683 kb on + strand, within Synpcc7942_0462 at 449.685 kb on + strand, within Synpcc7942_0462 at 449.731 kb on - strand, within Synpcc7942_0462 at 449.736 kb on + strand, within Synpcc7942_0462 at 449.805 kb on - strand, within Synpcc7942_0462 at 449.810 kb on - strand, within Synpcc7942_0462 at 449.876 kb on - strand, within Synpcc7942_0462 at 449.886 kb on + strand, within Synpcc7942_0462 at 449.886 kb on + strand, within Synpcc7942_0462 at 449.887 kb on + strand, within Synpcc7942_0462 at 449.894 kb on - strand at 449.900 kb on - strand at 449.967 kb on + strand at 449.967 kb on + strand at 449.967 kb on + strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.981 kb on + strand at 450.048 kb on - strand, within Synpcc7942_0463 at 450.060 kb on + strand, within Synpcc7942_0463 at 450.068 kb on - strand, within Synpcc7942_0463 at 450.070 kb on - strand, within Synpcc7942_0463 at 450.131 kb on + strand, within Synpcc7942_0463 at 450.132 kb on - strand at 450.165 kb on - strand, within Synpcc7942_0463 at 450.189 kb on + strand, within Synpcc7942_0463 at 450.216 kb on - strand, within Synpcc7942_0463 at 450.237 kb on + strand, within Synpcc7942_0463 at 450.237 kb on + strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.247 kb on + strand, within Synpcc7942_0463 at 450.250 kb on + strand, within Synpcc7942_0463 at 450.358 kb on - strand, within Synpcc7942_0463 at 450.358 kb on - strand, within Synpcc7942_0463 at 450.405 kb on + strand at 450.408 kb on - strand at 450.423 kb on - strand at 450.425 kb on + strand at 450.433 kb on - strand at 450.483 kb on - strand at 450.508 kb on - strand at 450.508 kb on - strand at 450.508 kb on - strand at 450.508 kb on - strand at 450.528 kb on - strand at 450.544 kb on + strand at 450.554 kb on + strand at 450.618 kb on + strand, within Synpcc7942_0464 at 450.622 kb on - strand, within Synpcc7942_0464 at 450.641 kb on - strand, within Synpcc7942_0464 at 450.644 kb on + strand, within Synpcc7942_0464 at 450.660 kb on + strand, within Synpcc7942_0464 at 450.668 kb on - strand, within Synpcc7942_0464 at 450.693 kb on + strand, within Synpcc7942_0464 at 450.708 kb on - strand, within Synpcc7942_0464 at 450.716 kb on + strand, within Synpcc7942_0464 at 450.718 kb on + strand, within Synpcc7942_0464 at 450.737 kb on + strand, within Synpcc7942_0464 at 450.737 kb on + strand, within Synpcc7942_0464 at 450.737 kb on + strand, within Synpcc7942_0464 at 450.738 kb on + strand, within Synpcc7942_0464 at 450.738 kb on + strand, within Synpcc7942_0464 at 450.742 kb on + strand, within Synpcc7942_0464 at 450.745 kb on - strand, within Synpcc7942_0464 at 450.745 kb on - strand, within Synpcc7942_0464 at 450.750 kb on - strand, within Synpcc7942_0464 at 450.765 kb on + strand, within Synpcc7942_0464 at 450.767 kb on + strand, within Synpcc7942_0464 at 450.777 kb on + strand, within Synpcc7942_0464 at 450.777 kb on + strand, within Synpcc7942_0464 at 450.805 kb on - strand, within Synpcc7942_0464 at 450.837 kb on - strand, within Synpcc7942_0464 at 450.861 kb on - strand, within Synpcc7942_0464 at 450.861 kb on - strand, within Synpcc7942_0464 at 451.034 kb on - strand at 451.034 kb on - strand at 451.037 kb on + strand at 451.037 kb on + strand at 451.037 kb on + strand at 451.045 kb on - strand at 451.045 kb on - strand at 451.125 kb on + strand, within Synpcc7942_0465 at 451.125 kb on + strand, within Synpcc7942_0465 at 451.133 kb on - strand, within Synpcc7942_0465 at 451.134 kb on - strand, within Synpcc7942_0465 at 451.136 kb on + strand, within Synpcc7942_0465 at 451.143 kb on + strand, within Synpcc7942_0465 at 451.164 kb on + strand, within Synpcc7942_0465 at 451.200 kb on + strand, within Synpcc7942_0465 at 451.227 kb on + strand, within Synpcc7942_0465 at 451.235 kb on - strand, within Synpcc7942_0465 at 451.250 kb on + strand, within Synpcc7942_0465 at 451.250 kb on + strand, within Synpcc7942_0465 at 451.302 kb on - strand, within Synpcc7942_0465 at 451.304 kb on - strand, within Synpcc7942_0465 at 451.311 kb on - strand, within Synpcc7942_0465 at 451.311 kb on - strand, within Synpcc7942_0465 at 451.331 kb on + strand, within Synpcc7942_0465 at 451.339 kb on - strand, within Synpcc7942_0465 at 451.348 kb on + strand, within Synpcc7942_0465 at 451.362 kb on - strand, within Synpcc7942_0465 at 451.378 kb on - strand, within Synpcc7942_0465 at 451.385 kb on + strand, within Synpcc7942_0465 at 451.387 kb on + strand, within Synpcc7942_0465 at 451.393 kb on - strand, within Synpcc7942_0465 at 451.443 kb on - strand, within Synpcc7942_0465 at 451.445 kb on + strand, within Synpcc7942_0465 at 451.453 kb on - strand, within Synpcc7942_0465 at 451.460 kb on + strand, within Synpcc7942_0465 at 451.524 kb on + strand, within Synpcc7942_0465 at 451.525 kb on + strand, within Synpcc7942_0465 at 451.525 kb on + strand, within Synpcc7942_0465 at 451.529 kb on + strand, within Synpcc7942_0465 at 451.574 kb on - strand, within Synpcc7942_0465 at 451.587 kb on + strand, within Synpcc7942_0465 at 451.595 kb on - strand, within Synpcc7942_0465 at 451.595 kb on - strand, within Synpcc7942_0465 at 451.625 kb on + strand, within Synpcc7942_0465 at 451.654 kb on + strand, within Synpcc7942_0465 at 451.668 kb on - strand, within Synpcc7942_0465 at 451.682 kb on + strand at 451.690 kb on - strand at 451.705 kb on - strand at 451.719 kb on + strand at 451.735 kb on + strand at 451.757 kb on + strand at 451.774 kb on + strand at 451.779 kb on + strand at 451.805 kb on - strand at 451.810 kb on - strand at 451.812 kb on + strand at 451.820 kb on - strand at 451.847 kb on + strand at 451.855 kb on - strand at 451.884 kb on + strand at 451.892 kb on - strand at 451.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 449,602 + Synpcc7942_0462 0.39 -1.3 449,602 + Synpcc7942_0462 0.39 -1.0 449,602 + Synpcc7942_0462 0.39 +3.3 449,610 - Synpcc7942_0462 0.41 -1.3 449,610 - Synpcc7942_0462 0.41 -1.5 449,617 + Synpcc7942_0462 0.42 -2.1 449,637 + Synpcc7942_0462 0.45 -0.4 449,637 + Synpcc7942_0462 0.45 -1.4 449,637 + Synpcc7942_0462 0.45 +1.6 449,637 + Synpcc7942_0462 0.45 +1.9 449,645 - Synpcc7942_0462 0.47 -2.3 449,645 - Synpcc7942_0462 0.47 -1.9 449,652 + Synpcc7942_0462 0.48 +0.2 449,664 + Synpcc7942_0462 0.50 +4.0 449,671 + Synpcc7942_0462 0.51 +1.5 449,672 - Synpcc7942_0462 0.51 +2.3 449,672 - Synpcc7942_0462 0.51 -2.1 449,683 + Synpcc7942_0462 0.53 -0.5 449,685 + Synpcc7942_0462 0.54 -1.2 449,731 - Synpcc7942_0462 0.61 +1.0 449,736 + Synpcc7942_0462 0.62 -1.1 449,805 - Synpcc7942_0462 0.74 -1.9 449,810 - Synpcc7942_0462 0.75 +0.5 449,876 - Synpcc7942_0462 0.86 -2.2 449,886 + Synpcc7942_0462 0.88 -1.9 449,886 + Synpcc7942_0462 0.88 -4.3 449,887 + Synpcc7942_0462 0.88 +1.6 449,894 - +3.2 449,900 - +1.6 449,967 + +0.3 449,967 + +0.1 449,967 + -1.5 449,975 - +1.3 449,975 - -2.0 449,975 - -2.7 449,975 - -0.4 449,981 + +2.0 450,048 - Synpcc7942_0463 0.18 -0.4 450,060 + Synpcc7942_0463 0.21 -2.0 450,068 - Synpcc7942_0463 0.23 +1.1 450,070 - Synpcc7942_0463 0.23 +1.6 450,131 + Synpcc7942_0463 0.35 +2.7 450,132 - +1.8 450,165 - Synpcc7942_0463 0.42 -0.0 450,189 + Synpcc7942_0463 0.47 -0.4 450,216 - Synpcc7942_0463 0.53 +0.6 450,237 + Synpcc7942_0463 0.57 +1.9 450,237 + Synpcc7942_0463 0.57 -1.6 450,245 - Synpcc7942_0463 0.59 +1.9 450,245 - Synpcc7942_0463 0.59 +2.1 450,245 - Synpcc7942_0463 0.59 -0.4 450,247 + Synpcc7942_0463 0.59 -1.4 450,250 + Synpcc7942_0463 0.60 -1.9 450,358 - Synpcc7942_0463 0.82 +0.8 450,358 - Synpcc7942_0463 0.82 -1.6 450,405 + -0.0 450,408 - -1.7 450,423 - +2.6 450,425 + +2.1 450,433 - -1.5 450,483 - +1.1 450,508 - -1.0 450,508 - -0.3 450,508 - +0.7 450,508 - +1.9 450,528 - +0.6 450,544 + -3.1 450,554 + -1.5 450,618 + Synpcc7942_0464 0.20 -4.7 450,622 - Synpcc7942_0464 0.21 -0.9 450,641 - Synpcc7942_0464 0.26 -1.7 450,644 + Synpcc7942_0464 0.27 +0.5 450,660 + Synpcc7942_0464 0.31 -2.7 450,668 - Synpcc7942_0464 0.33 -3.1 450,693 + Synpcc7942_0464 0.39 -4.2 450,708 - Synpcc7942_0464 0.43 +0.5 450,716 + Synpcc7942_0464 0.45 -0.9 450,718 + Synpcc7942_0464 0.45 -0.7 450,737 + Synpcc7942_0464 0.50 -2.7 450,737 + Synpcc7942_0464 0.50 -3.7 450,737 + Synpcc7942_0464 0.50 -3.3 450,738 + Synpcc7942_0464 0.50 -3.2 450,738 + Synpcc7942_0464 0.50 -3.7 450,742 + Synpcc7942_0464 0.51 -1.5 450,745 - Synpcc7942_0464 0.52 -1.3 450,745 - Synpcc7942_0464 0.52 -3.7 450,750 - Synpcc7942_0464 0.53 -2.4 450,765 + Synpcc7942_0464 0.57 -2.1 450,767 + Synpcc7942_0464 0.58 -5.1 450,777 + Synpcc7942_0464 0.60 -3.5 450,777 + Synpcc7942_0464 0.60 +0.1 450,805 - Synpcc7942_0464 0.67 -1.6 450,837 - Synpcc7942_0464 0.75 -2.2 450,861 - Synpcc7942_0464 0.81 -4.6 450,861 - Synpcc7942_0464 0.81 -1.7 451,034 - -2.4 451,034 - +2.0 451,037 + -2.7 451,037 + -3.0 451,037 + +0.8 451,045 - +1.1 451,045 - -1.7 451,125 + Synpcc7942_0465 0.14 +0.1 451,125 + Synpcc7942_0465 0.14 -1.2 451,133 - Synpcc7942_0465 0.15 -2.4 451,134 - Synpcc7942_0465 0.15 -1.8 451,136 + Synpcc7942_0465 0.16 +1.5 451,143 + Synpcc7942_0465 0.17 -1.3 451,164 + Synpcc7942_0465 0.19 -0.4 451,200 + Synpcc7942_0465 0.24 -1.8 451,227 + Synpcc7942_0465 0.28 -3.1 451,235 - Synpcc7942_0465 0.29 +1.5 451,250 + Synpcc7942_0465 0.31 -1.8 451,250 + Synpcc7942_0465 0.31 +0.7 451,302 - Synpcc7942_0465 0.38 -0.6 451,304 - Synpcc7942_0465 0.39 -1.4 451,311 - Synpcc7942_0465 0.40 -2.4 451,311 - Synpcc7942_0465 0.40 -2.7 451,331 + Synpcc7942_0465 0.42 -1.5 451,339 - Synpcc7942_0465 0.44 -2.5 451,348 + Synpcc7942_0465 0.45 +0.7 451,362 - Synpcc7942_0465 0.47 -3.1 451,378 - Synpcc7942_0465 0.49 +6.9 451,385 + Synpcc7942_0465 0.50 +2.1 451,387 + Synpcc7942_0465 0.50 -1.1 451,393 - Synpcc7942_0465 0.51 -1.0 451,443 - Synpcc7942_0465 0.58 +0.1 451,445 + Synpcc7942_0465 0.58 -1.3 451,453 - Synpcc7942_0465 0.59 -0.3 451,460 + Synpcc7942_0465 0.60 +1.3 451,524 + Synpcc7942_0465 0.69 -0.3 451,525 + Synpcc7942_0465 0.69 +0.1 451,525 + Synpcc7942_0465 0.69 +0.8 451,529 + Synpcc7942_0465 0.70 -0.9 451,574 - Synpcc7942_0465 0.76 -0.9 451,587 + Synpcc7942_0465 0.78 -0.7 451,595 - Synpcc7942_0465 0.79 +0.7 451,595 - Synpcc7942_0465 0.79 -2.3 451,625 + Synpcc7942_0465 0.83 -1.5 451,654 + Synpcc7942_0465 0.87 -1.7 451,668 - Synpcc7942_0465 0.89 +0.7 451,682 + -0.3 451,690 - -1.4 451,705 - -0.0 451,719 + -0.9 451,735 + -0.4 451,757 + -2.7 451,774 + +0.3 451,779 + -2.8 451,805 - +0.4 451,810 - -2.0 451,812 + -3.8 451,820 - -0.5 451,847 + -1.3 451,855 - +1.3 451,884 + +0.1 451,892 - +1.6 451,932 + -1.3
Or see this region's nucleotide sequence