Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0448

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsN and nth are separated by 29 nucleotidesnth and Synpcc7942_0448 overlap by 4 nucleotidesSynpcc7942_0448 and serS are separated by 46 nucleotides Synpcc7942_0446: rpsN - 30S ribosomal protein S14, at 436,519 to 436,821 rpsN Synpcc7942_0447: nth - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III, at 436,851 to 437,537 nth Synpcc7942_0448: Synpcc7942_0448 - YUP8H12.25 {{Arabidopsis thaliana}}-type protein. Metallo peptidase. MEROPS family M50B, at 437,534 to 438,628 _0448 Synpcc7942_0449: serS - seryl-tRNA synthetase, at 438,675 to 440,006 serS Position (kb) 437 438 439Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 436.889 kb on - strandat 436.918 kb on + strandat 436.950 kb on - strand, within nthat 436.950 kb on - strand, within nthat 436.975 kb on - strand, within nthat 437.036 kb on + strand, within nthat 437.041 kb on + strand, within nthat 437.108 kb on + strandat 437.139 kb on + strand, within nthat 437.139 kb on + strand, within nthat 437.139 kb on + strandat 437.147 kb on - strand, within nthat 437.147 kb on - strandat 437.147 kb on - strand, within nthat 437.147 kb on - strand, within nthat 437.152 kb on - strand, within nthat 437.173 kb on - strand, within nthat 437.174 kb on + strand, within nthat 437.218 kb on + strand, within nthat 437.225 kb on + strand, within nthat 437.236 kb on - strand, within nthat 437.300 kb on - strand, within nthat 437.339 kb on + strand, within nthat 437.339 kb on + strand, within nthat 437.467 kb on + strand, within nthat 437.467 kb on + strand, within nthat 437.467 kb on + strand, within nthat 437.475 kb on - strandat 437.475 kb on - strandat 437.477 kb on + strandat 437.477 kb on + strandat 437.485 kb on - strandat 437.528 kb on - strandat 437.545 kb on - strandat 437.556 kb on + strandat 437.564 kb on - strandat 437.564 kb on - strandat 437.604 kb on + strandat 437.604 kb on + strandat 437.615 kb on + strandat 437.628 kb on - strandat 437.629 kb on + strandat 437.630 kb on + strandat 437.637 kb on - strandat 437.666 kb on + strand, within Synpcc7942_0448at 437.666 kb on + strand, within Synpcc7942_0448at 437.674 kb on - strand, within Synpcc7942_0448at 437.674 kb on - strand, within Synpcc7942_0448at 437.674 kb on - strand, within Synpcc7942_0448at 437.674 kb on - strand, within Synpcc7942_0448at 437.698 kb on - strand, within Synpcc7942_0448at 437.730 kb on + strand, within Synpcc7942_0448at 437.732 kb on + strand, within Synpcc7942_0448at 437.754 kb on - strand, within Synpcc7942_0448at 437.773 kb on + strand, within Synpcc7942_0448at 437.834 kb on + strand, within Synpcc7942_0448at 437.834 kb on + strand, within Synpcc7942_0448at 437.842 kb on - strand, within Synpcc7942_0448at 437.878 kb on + strand, within Synpcc7942_0448at 437.886 kb on - strand, within Synpcc7942_0448at 437.893 kb on - strand, within Synpcc7942_0448at 437.945 kb on + strand, within Synpcc7942_0448at 438.110 kb on - strand, within Synpcc7942_0448at 438.124 kb on + strand, within Synpcc7942_0448at 438.132 kb on - strand, within Synpcc7942_0448at 438.151 kb on + strand, within Synpcc7942_0448at 438.154 kb on - strand, within Synpcc7942_0448at 438.154 kb on - strand, within Synpcc7942_0448at 438.161 kb on + strand, within Synpcc7942_0448at 438.161 kb on + strand, within Synpcc7942_0448at 438.161 kb on + strand, within Synpcc7942_0448at 438.169 kb on - strand, within Synpcc7942_0448at 438.184 kb on - strand, within Synpcc7942_0448at 438.248 kb on - strand, within Synpcc7942_0448at 438.344 kb on + strand, within Synpcc7942_0448at 438.347 kb on - strand, within Synpcc7942_0448at 438.359 kb on + strand, within Synpcc7942_0448at 438.359 kb on + strand, within Synpcc7942_0448at 438.367 kb on - strand, within Synpcc7942_0448at 438.385 kb on + strand, within Synpcc7942_0448at 438.425 kb on - strand, within Synpcc7942_0448at 438.458 kb on + strand, within Synpcc7942_0448at 438.460 kb on - strand, within Synpcc7942_0448at 438.466 kb on + strand, within Synpcc7942_0448at 438.484 kb on + strand, within Synpcc7942_0448at 438.486 kb on + strand, within Synpcc7942_0448at 438.497 kb on + strand, within Synpcc7942_0448at 438.497 kb on + strand, within Synpcc7942_0448at 438.497 kb on + strand, within Synpcc7942_0448at 438.505 kb on - strand, within Synpcc7942_0448at 438.534 kb on + strandat 438.541 kb on + strandat 438.549 kb on - strandat 438.566 kb on - strandat 438.581 kb on - strandat 438.596 kb on + strandat 438.596 kb on + strandat 438.604 kb on - strandat 438.604 kb on - strandat 438.604 kb on - strandat 438.619 kb on + strandat 438.627 kb on - strandat 438.629 kb on + strandat 438.634 kb on + strandat 438.634 kb on + strandat 438.636 kb on + strandat 438.642 kb on - strandat 438.642 kb on - strandat 438.644 kb on - strandat 438.644 kb on - strandat 438.653 kb on + strandat 438.653 kb on + strandat 438.653 kb on - strandat 438.673 kb on + strandat 438.673 kb on + strandat 438.681 kb on - strandat 438.681 kb on - strandat 438.681 kb on - strandat 438.681 kb on - strandat 438.681 kb on - strandat 438.691 kb on - strandat 438.698 kb on + strandat 438.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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436,889 - -2.3
436,918 + -1.2
436,950 - nth Synpcc7942_0447 0.14 +2.6
436,950 - nth Synpcc7942_0447 0.14 +2.5
436,975 - nth Synpcc7942_0447 0.18 +0.7
437,036 + nth Synpcc7942_0447 0.27 -1.9
437,041 + nth Synpcc7942_0447 0.28 -1.9
437,108 + +1.6
437,139 + nth Synpcc7942_0447 0.42 +1.2
437,139 + nth Synpcc7942_0447 0.42 +3.6
437,139 + -1.8
437,147 - nth Synpcc7942_0447 0.43 +1.8
437,147 - +2.7
437,147 - nth Synpcc7942_0447 0.43 +1.5
437,147 - nth Synpcc7942_0447 0.43 +0.6
437,152 - nth Synpcc7942_0447 0.44 -0.5
437,173 - nth Synpcc7942_0447 0.47 +5.5
437,174 + nth Synpcc7942_0447 0.47 -1.5
437,218 + nth Synpcc7942_0447 0.53 -0.2
437,225 + nth Synpcc7942_0447 0.54 -1.5
437,236 - nth Synpcc7942_0447 0.56 -0.3
437,300 - nth Synpcc7942_0447 0.65 +0.9
437,339 + nth Synpcc7942_0447 0.71 -1.4
437,339 + nth Synpcc7942_0447 0.71 -1.3
437,467 + nth Synpcc7942_0447 0.90 -0.5
437,467 + nth Synpcc7942_0447 0.90 +1.7
437,467 + nth Synpcc7942_0447 0.90 -0.6
437,475 - +2.6
437,475 - -2.3
437,477 + -0.8
437,477 + -1.6
437,485 - +4.0
437,528 - -0.1
437,545 - -1.9
437,556 + -1.7
437,564 - -1.0
437,564 - -0.5
437,604 + -3.1
437,604 + +0.7
437,615 + -2.4
437,628 - -2.4
437,629 + -2.5
437,630 + -2.7
437,637 - -3.7
437,666 + Synpcc7942_0448 0.12 +1.1
437,666 + Synpcc7942_0448 0.12 -3.5
437,674 - Synpcc7942_0448 0.13 -3.7
437,674 - Synpcc7942_0448 0.13 -2.7
437,674 - Synpcc7942_0448 0.13 -1.5
437,674 - Synpcc7942_0448 0.13 -4.0
437,698 - Synpcc7942_0448 0.15 -4.0
437,730 + Synpcc7942_0448 0.18 -3.4
437,732 + Synpcc7942_0448 0.18 -2.6
437,754 - Synpcc7942_0448 0.20 -2.5
437,773 + Synpcc7942_0448 0.22 -5.3
437,834 + Synpcc7942_0448 0.27 -2.3
437,834 + Synpcc7942_0448 0.27 -2.6
437,842 - Synpcc7942_0448 0.28 -5.6
437,878 + Synpcc7942_0448 0.31 -4.7
437,886 - Synpcc7942_0448 0.32 -2.4
437,893 - Synpcc7942_0448 0.33 -3.5
437,945 + Synpcc7942_0448 0.38 -1.6
438,110 - Synpcc7942_0448 0.53 -1.9
438,124 + Synpcc7942_0448 0.54 -3.2
438,132 - Synpcc7942_0448 0.55 -1.1
438,151 + Synpcc7942_0448 0.56 -2.9
438,154 - Synpcc7942_0448 0.57 -1.5
438,154 - Synpcc7942_0448 0.57 -0.4
438,161 + Synpcc7942_0448 0.57 -3.4
438,161 + Synpcc7942_0448 0.57 -2.8
438,161 + Synpcc7942_0448 0.57 -0.9
438,169 - Synpcc7942_0448 0.58 -3.6
438,184 - Synpcc7942_0448 0.59 -2.6
438,248 - Synpcc7942_0448 0.65 -2.8
438,344 + Synpcc7942_0448 0.74 -2.0
438,347 - Synpcc7942_0448 0.74 -2.9
438,359 + Synpcc7942_0448 0.75 -1.9
438,359 + Synpcc7942_0448 0.75 -2.2
438,367 - Synpcc7942_0448 0.76 -3.0
438,385 + Synpcc7942_0448 0.78 -2.6
438,425 - Synpcc7942_0448 0.81 -2.0
438,458 + Synpcc7942_0448 0.84 -4.3
438,460 - Synpcc7942_0448 0.85 -1.9
438,466 + Synpcc7942_0448 0.85 -2.0
438,484 + Synpcc7942_0448 0.87 -3.7
438,486 + Synpcc7942_0448 0.87 -2.2
438,497 + Synpcc7942_0448 0.88 -1.6
438,497 + Synpcc7942_0448 0.88 -1.6
438,497 + Synpcc7942_0448 0.88 -1.6
438,505 - Synpcc7942_0448 0.89 -2.9
438,534 + -2.1
438,541 + -1.1
438,549 - -1.6
438,566 - -2.8
438,581 - +0.4
438,596 + -4.1
438,596 + -2.6
438,604 - -3.7
438,604 - -1.3
438,604 - -1.8
438,619 + -2.6
438,627 - -0.9
438,629 + -1.9
438,634 + -1.4
438,634 + +1.1
438,636 + -1.5
438,642 - -3.5
438,642 - -2.9
438,644 - -0.3
438,644 - -1.6
438,653 + -1.0
438,653 + -2.0
438,653 - +1.0
438,673 + +1.4
438,673 + +0.7
438,681 - -1.4
438,681 - +0.1
438,681 - -0.1
438,681 - +0.1
438,681 - -0.9
438,691 - -0.3
438,698 + -3.5
438,706 - -1.9

Or see this region's nucleotide sequence