Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0444 and oppC are separated by 342 nucleotides oppC and rpsN are separated by 80 nucleotides rpsN and nth are separated by 29 nucleotides
Synpcc7942_0444: Synpcc7942_0444 - hypothetical protein, at 434,357 to 435,040
_0444
Synpcc7942_0445: oppC - ABC-type dipeptide/oligopeptide/nickel transport systems permease components-like, at 435,383 to 436,438
oppC
Synpcc7942_0446: rpsN - 30S ribosomal protein S14, at 436,519 to 436,821
rpsN
Synpcc7942_0447: nth - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III, at 436,851 to 437,537
nth
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 434.383 kb on + strand at 434.383 kb on + strand at 434.391 kb on - strand at 434.506 kb on - strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.516 kb on + strand, within Synpcc7942_0444 at 434.522 kb on - strand, within Synpcc7942_0444 at 434.523 kb on + strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.524 kb on - strand, within Synpcc7942_0444 at 434.526 kb on + strand, within Synpcc7942_0444 at 434.526 kb on + strand, within Synpcc7942_0444 at 434.528 kb on + strand, within Synpcc7942_0444 at 434.533 kb on + strand, within Synpcc7942_0444 at 434.534 kb on - strand, within Synpcc7942_0444 at 434.541 kb on - strand, within Synpcc7942_0444 at 434.567 kb on - strand, within Synpcc7942_0444 at 434.652 kb on + strand, within Synpcc7942_0444 at 434.660 kb on - strand, within Synpcc7942_0444 at 434.692 kb on - strand, within Synpcc7942_0444 at 434.731 kb on - strand, within Synpcc7942_0444 at 434.749 kb on + strand, within Synpcc7942_0444 at 434.754 kb on - strand, within Synpcc7942_0444 at 434.789 kb on + strand, within Synpcc7942_0444 at 434.846 kb on - strand, within Synpcc7942_0444 at 434.856 kb on - strand, within Synpcc7942_0444 at 434.875 kb on + strand, within Synpcc7942_0444 at 434.898 kb on + strand, within Synpcc7942_0444 at 434.948 kb on + strand, within Synpcc7942_0444 at 435.016 kb on + strand at 435.016 kb on + strand at 435.016 kb on + strand at 435.018 kb on + strand at 435.026 kb on - strand at 435.043 kb on - strand at 435.117 kb on - strand at 435.308 kb on - strand at 435.310 kb on + strand at 435.310 kb on + strand at 435.387 kb on - strand at 435.387 kb on - strand at 435.401 kb on - strand at 435.434 kb on + strand at 435.435 kb on - strand at 435.442 kb on - strand at 435.442 kb on - strand at 435.450 kb on + strand at 435.460 kb on + strand at 435.526 kb on - strand, within oppC at 435.529 kb on + strand, within oppC at 435.537 kb on - strand at 435.539 kb on - strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.572 kb on + strand, within oppC at 435.580 kb on - strand, within oppC at 435.580 kb on - strand, within oppC at 435.599 kb on + strand, within oppC at 435.599 kb on + strand, within oppC at 435.643 kb on - strand, within oppC at 435.650 kb on - strand, within oppC at 435.692 kb on - strand, within oppC at 435.695 kb on - strand, within oppC at 435.755 kb on + strand, within oppC at 435.768 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.813 kb on + strand, within oppC at 435.816 kb on - strand, within oppC at 435.818 kb on + strand, within oppC at 435.821 kb on - strand, within oppC at 435.821 kb on - strand, within oppC at 435.824 kb on + strand, within oppC at 435.826 kb on - strand, within oppC at 435.829 kb on - strand, within oppC at 435.830 kb on + strand, within oppC at 435.835 kb on + strand, within oppC at 435.838 kb on - strand, within oppC at 435.865 kb on + strand, within oppC at 435.876 kb on + strand, within oppC at 435.968 kb on + strand, within oppC at 435.969 kb on + strand, within oppC at 435.976 kb on - strand, within oppC at 436.013 kb on + strand, within oppC at 436.024 kb on + strand, within oppC at 436.028 kb on + strand, within oppC at 436.043 kb on + strand, within oppC at 436.056 kb on + strand, within oppC at 436.064 kb on - strand, within oppC at 436.064 kb on - strand, within oppC at 436.081 kb on + strand, within oppC at 436.089 kb on - strand, within oppC at 436.089 kb on - strand, within oppC at 436.089 kb on - strand, within oppC at 436.112 kb on + strand, within oppC at 436.172 kb on + strand, within oppC at 436.189 kb on - strand, within oppC at 436.233 kb on + strand, within oppC at 436.233 kb on + strand, within oppC at 436.233 kb on + strand, within oppC at 436.241 kb on - strand, within oppC at 436.241 kb on - strand, within oppC at 436.246 kb on + strand, within oppC at 436.261 kb on - strand, within oppC at 436.279 kb on + strand, within oppC at 436.308 kb on - strand, within oppC at 436.320 kb on + strand, within oppC at 436.327 kb on + strand, within oppC at 436.328 kb on - strand, within oppC at 436.328 kb on - strand, within oppC at 436.334 kb on - strand at 436.335 kb on - strand at 436.336 kb on + strand at 436.336 kb on + strand at 436.358 kb on - strand at 436.368 kb on - strand at 436.415 kb on - strand at 436.434 kb on + strand at 436.889 kb on - strand at 436.918 kb on + strand at 436.950 kb on - strand, within nth at 436.950 kb on - strand, within nth at 436.975 kb on - strand, within nth at 437.036 kb on + strand, within nth at 437.041 kb on + strand, within nth at 437.108 kb on + strand at 437.139 kb on + strand, within nth at 437.139 kb on + strand, within nth at 437.139 kb on + strand at 437.147 kb on - strand, within nth at 437.147 kb on - strand at 437.147 kb on - strand, within nth at 437.147 kb on - strand, within nth at 437.152 kb on - strand, within nth at 437.173 kb on - strand, within nth at 437.174 kb on + strand, within nth at 437.218 kb on + strand, within nth at 437.225 kb on + strand, within nth at 437.236 kb on - strand, within nth at 437.300 kb on - strand, within nth at 437.339 kb on + strand, within nth at 437.339 kb on + strand, within nth
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 434,383 + +0.7 434,383 + -2.3 434,391 - -0.7 434,506 - Synpcc7942_0444 0.22 +1.8 434,516 + Synpcc7942_0444 0.23 -0.5 434,516 + Synpcc7942_0444 0.23 -0.9 434,516 + Synpcc7942_0444 0.23 +1.7 434,522 - Synpcc7942_0444 0.24 +2.3 434,523 + Synpcc7942_0444 0.24 +1.2 434,524 - Synpcc7942_0444 0.24 -1.7 434,524 - Synpcc7942_0444 0.24 +1.8 434,524 - Synpcc7942_0444 0.24 -1.2 434,526 + Synpcc7942_0444 0.25 -1.1 434,526 + Synpcc7942_0444 0.25 -0.5 434,528 + Synpcc7942_0444 0.25 -0.6 434,533 + Synpcc7942_0444 0.26 +2.5 434,534 - Synpcc7942_0444 0.26 -1.4 434,541 - Synpcc7942_0444 0.27 -2.9 434,567 - Synpcc7942_0444 0.31 +3.2 434,652 + Synpcc7942_0444 0.43 -0.8 434,660 - Synpcc7942_0444 0.44 +0.3 434,692 - Synpcc7942_0444 0.49 +0.1 434,731 - Synpcc7942_0444 0.55 -1.1 434,749 + Synpcc7942_0444 0.57 -2.6 434,754 - Synpcc7942_0444 0.58 +1.5 434,789 + Synpcc7942_0444 0.63 -2.1 434,846 - Synpcc7942_0444 0.71 -3.1 434,856 - Synpcc7942_0444 0.73 -0.1 434,875 + Synpcc7942_0444 0.76 -0.6 434,898 + Synpcc7942_0444 0.79 -0.8 434,948 + Synpcc7942_0444 0.86 -0.3 435,016 + -0.3 435,016 + -1.0 435,016 + +0.1 435,018 + -0.5 435,026 - -0.5 435,043 - -1.6 435,117 - -1.8 435,308 - -2.5 435,310 + -1.9 435,310 + -3.1 435,387 - +1.8 435,387 - +0.5 435,401 - -1.3 435,434 + -0.5 435,435 - +1.5 435,442 - +0.9 435,442 - +0.3 435,450 + +3.7 435,460 + -1.3 435,526 - oppC Synpcc7942_0445 0.14 +0.8 435,529 + oppC Synpcc7942_0445 0.14 +3.9 435,537 - -0.8 435,539 - oppC Synpcc7942_0445 0.15 -1.2 435,572 + oppC Synpcc7942_0445 0.18 -1.5 435,572 + oppC Synpcc7942_0445 0.18 +3.0 435,572 + oppC Synpcc7942_0445 0.18 +0.8 435,572 + oppC Synpcc7942_0445 0.18 -0.6 435,580 - oppC Synpcc7942_0445 0.19 -2.9 435,580 - oppC Synpcc7942_0445 0.19 +2.8 435,599 + oppC Synpcc7942_0445 0.20 +0.5 435,599 + oppC Synpcc7942_0445 0.20 +0.7 435,643 - oppC Synpcc7942_0445 0.25 +0.5 435,650 - oppC Synpcc7942_0445 0.25 +1.1 435,692 - oppC Synpcc7942_0445 0.29 -0.8 435,695 - oppC Synpcc7942_0445 0.30 -2.2 435,755 + oppC Synpcc7942_0445 0.35 -1.8 435,768 + oppC Synpcc7942_0445 0.36 +0.5 435,813 + oppC Synpcc7942_0445 0.41 +1.9 435,813 + oppC Synpcc7942_0445 0.41 -1.2 435,813 + oppC Synpcc7942_0445 0.41 +2.1 435,816 - oppC Synpcc7942_0445 0.41 +0.6 435,818 + oppC Synpcc7942_0445 0.41 -0.5 435,821 - oppC Synpcc7942_0445 0.41 -0.0 435,821 - oppC Synpcc7942_0445 0.41 +1.0 435,824 + oppC Synpcc7942_0445 0.42 -1.6 435,826 - oppC Synpcc7942_0445 0.42 -0.8 435,829 - oppC Synpcc7942_0445 0.42 +2.3 435,830 + oppC Synpcc7942_0445 0.42 -0.5 435,835 + oppC Synpcc7942_0445 0.43 +1.2 435,838 - oppC Synpcc7942_0445 0.43 +2.6 435,865 + oppC Synpcc7942_0445 0.46 +1.5 435,876 + oppC Synpcc7942_0445 0.47 +2.7 435,968 + oppC Synpcc7942_0445 0.55 +2.3 435,969 + oppC Synpcc7942_0445 0.55 +0.8 435,976 - oppC Synpcc7942_0445 0.56 -2.5 436,013 + oppC Synpcc7942_0445 0.60 +0.2 436,024 + oppC Synpcc7942_0445 0.61 -0.4 436,028 + oppC Synpcc7942_0445 0.61 -0.3 436,043 + oppC Synpcc7942_0445 0.62 -2.3 436,056 + oppC Synpcc7942_0445 0.64 -1.4 436,064 - oppC Synpcc7942_0445 0.64 +0.1 436,064 - oppC Synpcc7942_0445 0.64 -0.8 436,081 + oppC Synpcc7942_0445 0.66 +0.8 436,089 - oppC Synpcc7942_0445 0.67 -0.0 436,089 - oppC Synpcc7942_0445 0.67 +1.7 436,089 - oppC Synpcc7942_0445 0.67 +1.9 436,112 + oppC Synpcc7942_0445 0.69 -2.9 436,172 + oppC Synpcc7942_0445 0.75 +3.0 436,189 - oppC Synpcc7942_0445 0.76 +0.8 436,233 + oppC Synpcc7942_0445 0.80 +2.3 436,233 + oppC Synpcc7942_0445 0.80 +3.4 436,233 + oppC Synpcc7942_0445 0.80 +2.1 436,241 - oppC Synpcc7942_0445 0.81 -2.1 436,241 - oppC Synpcc7942_0445 0.81 -1.1 436,246 + oppC Synpcc7942_0445 0.82 -2.2 436,261 - oppC Synpcc7942_0445 0.83 -0.3 436,279 + oppC Synpcc7942_0445 0.85 +0.8 436,308 - oppC Synpcc7942_0445 0.88 -2.4 436,320 + oppC Synpcc7942_0445 0.89 -2.3 436,327 + oppC Synpcc7942_0445 0.89 -1.4 436,328 - oppC Synpcc7942_0445 0.89 +1.1 436,328 - oppC Synpcc7942_0445 0.89 +2.0 436,334 - +0.4 436,335 - +0.6 436,336 + -0.1 436,336 + -0.6 436,358 - +0.8 436,368 - +0.2 436,415 - -2.2 436,434 + +0.8 436,889 - -2.3 436,918 + -1.2 436,950 - nth Synpcc7942_0447 0.14 +2.6 436,950 - nth Synpcc7942_0447 0.14 +2.5 436,975 - nth Synpcc7942_0447 0.18 +0.7 437,036 + nth Synpcc7942_0447 0.27 -1.9 437,041 + nth Synpcc7942_0447 0.28 -1.9 437,108 + +1.6 437,139 + nth Synpcc7942_0447 0.42 +1.2 437,139 + nth Synpcc7942_0447 0.42 +3.6 437,139 + -1.8 437,147 - nth Synpcc7942_0447 0.43 +1.8 437,147 - +2.7 437,147 - nth Synpcc7942_0447 0.43 +1.5 437,147 - nth Synpcc7942_0447 0.43 +0.6 437,152 - nth Synpcc7942_0447 0.44 -0.5 437,173 - nth Synpcc7942_0447 0.47 +5.5 437,174 + nth Synpcc7942_0447 0.47 -1.5 437,218 + nth Synpcc7942_0447 0.53 -0.2 437,225 + nth Synpcc7942_0447 0.54 -1.5 437,236 - nth Synpcc7942_0447 0.56 -0.3 437,300 - nth Synpcc7942_0447 0.65 +0.9 437,339 + nth Synpcc7942_0447 0.71 -1.4 437,339 + nth Synpcc7942_0447 0.71 -1.3
Or see this region's nucleotide sequence