Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0416

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0415 and Synpcc7942_0416 are separated by 243 nucleotidesSynpcc7942_0416 and Synpcc7942_0417 are separated by 78 nucleotides Synpcc7942_0415: Synpcc7942_0415 - hypothetical protein, at 405,168 to 406,145 _0415 Synpcc7942_0416: Synpcc7942_0416 - hypothetical protein, at 406,389 to 406,772 _0416 Synpcc7942_0417: Synpcc7942_0417 - ATPase, at 406,851 to 408,359 _0417 Position (kb) 406 407Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 405.391 kb on + strand, within Synpcc7942_0415at 405.419 kb on + strand, within Synpcc7942_0415at 405.419 kb on + strand, within Synpcc7942_0415at 405.437 kb on + strand, within Synpcc7942_0415at 405.438 kb on + strand, within Synpcc7942_0415at 405.443 kb on + strand, within Synpcc7942_0415at 405.443 kb on + strand, within Synpcc7942_0415at 405.446 kb on - strand, within Synpcc7942_0415at 405.473 kb on + strand, within Synpcc7942_0415at 405.473 kb on + strand, within Synpcc7942_0415at 405.511 kb on - strand, within Synpcc7942_0415at 405.538 kb on + strand, within Synpcc7942_0415at 405.541 kb on - strand, within Synpcc7942_0415at 405.543 kb on + strand, within Synpcc7942_0415at 405.543 kb on + strand, within Synpcc7942_0415at 405.546 kb on - strand, within Synpcc7942_0415at 405.591 kb on - strand, within Synpcc7942_0415at 405.608 kb on - strand, within Synpcc7942_0415at 405.627 kb on - strand, within Synpcc7942_0415at 405.634 kb on + strand, within Synpcc7942_0415at 405.634 kb on + strand, within Synpcc7942_0415at 405.634 kb on + strand, within Synpcc7942_0415at 405.634 kb on + strand, within Synpcc7942_0415at 405.642 kb on - strand, within Synpcc7942_0415at 405.642 kb on - strand, within Synpcc7942_0415at 405.646 kb on + strand, within Synpcc7942_0415at 405.654 kb on - strand, within Synpcc7942_0415at 405.654 kb on - strand, within Synpcc7942_0415at 405.654 kb on - strand, within Synpcc7942_0415at 405.654 kb on - strand, within Synpcc7942_0415at 405.759 kb on - strand, within Synpcc7942_0415at 405.759 kb on - strand, within Synpcc7942_0415at 405.793 kb on + strand, within Synpcc7942_0415at 405.799 kb on - strand, within Synpcc7942_0415at 405.833 kb on - strand, within Synpcc7942_0415at 405.833 kb on - strand, within Synpcc7942_0415at 405.844 kb on + strand, within Synpcc7942_0415at 405.844 kb on + strand, within Synpcc7942_0415at 405.849 kb on + strand, within Synpcc7942_0415at 405.850 kb on + strand, within Synpcc7942_0415at 405.856 kb on + strand, within Synpcc7942_0415at 405.856 kb on + strand, within Synpcc7942_0415at 405.884 kb on + strand, within Synpcc7942_0415at 405.884 kb on + strand, within Synpcc7942_0415at 405.884 kb on + strand, within Synpcc7942_0415at 405.904 kb on + strand, within Synpcc7942_0415at 405.907 kb on - strand, within Synpcc7942_0415at 405.918 kb on + strand, within Synpcc7942_0415at 405.939 kb on + strand, within Synpcc7942_0415at 405.955 kb on + strand, within Synpcc7942_0415at 405.958 kb on + strand, within Synpcc7942_0415at 405.958 kb on + strandat 405.958 kb on + strand, within Synpcc7942_0415at 406.008 kb on - strand, within Synpcc7942_0415at 406.051 kb on + strandat 406.056 kb on + strandat 406.056 kb on + strandat 406.062 kb on + strandat 406.090 kb on + strandat 406.107 kb on - strandat 406.107 kb on - strandat 406.117 kb on - strandat 406.131 kb on + strandat 406.139 kb on - strandat 406.153 kb on + strandat 406.155 kb on + strandat 406.155 kb on + strandat 406.161 kb on - strandat 406.163 kb on - strandat 406.163 kb on - strandat 406.165 kb on + strandat 406.172 kb on + strandat 406.173 kb on - strandat 406.173 kb on - strandat 406.180 kb on - strandat 406.222 kb on - strandat 406.245 kb on + strandat 406.263 kb on - strandat 406.484 kb on + strand, within Synpcc7942_0416at 406.500 kb on + strand, within Synpcc7942_0416at 406.533 kb on + strandat 406.547 kb on + strandat 406.555 kb on - strand, within Synpcc7942_0416at 406.555 kb on - strand, within Synpcc7942_0416at 406.562 kb on + strand, within Synpcc7942_0416at 406.583 kb on + strand, within Synpcc7942_0416at 406.659 kb on + strand, within Synpcc7942_0416at 406.667 kb on - strand, within Synpcc7942_0416at 406.690 kb on - strand, within Synpcc7942_0416at 406.690 kb on - strand, within Synpcc7942_0416at 406.716 kb on + strand, within Synpcc7942_0416at 406.724 kb on - strand, within Synpcc7942_0416at 406.773 kb on + strandat 406.798 kb on + strandat 406.808 kb on - strandat 406.868 kb on - strandat 406.934 kb on + strandat 406.987 kb on - strandat 407.036 kb on + strand, within Synpcc7942_0417at 407.039 kb on - strand, within Synpcc7942_0417at 407.041 kb on + strand, within Synpcc7942_0417at 407.044 kb on - strand, within Synpcc7942_0417at 407.044 kb on - strand, within Synpcc7942_0417at 407.049 kb on - strand, within Synpcc7942_0417at 407.088 kb on - strand, within Synpcc7942_0417at 407.132 kb on + strand, within Synpcc7942_0417at 407.174 kb on + strand, within Synpcc7942_0417at 407.184 kb on + strand, within Synpcc7942_0417at 407.197 kb on - strandat 407.204 kb on + strand, within Synpcc7942_0417at 407.283 kb on + strand, within Synpcc7942_0417at 407.350 kb on + strand, within Synpcc7942_0417at 407.376 kb on + strand, within Synpcc7942_0417at 407.449 kb on + strand, within Synpcc7942_0417at 407.556 kb on + strandat 407.612 kb on + strand, within Synpcc7942_0417at 407.624 kb on + strand, within Synpcc7942_0417at 407.624 kb on + strand, within Synpcc7942_0417at 407.624 kb on + strand, within Synpcc7942_0417at 407.657 kb on - strand, within Synpcc7942_0417at 407.732 kb on + strandat 407.733 kb on + strand, within Synpcc7942_0417at 407.740 kb on - strand, within Synpcc7942_0417at 407.740 kb on - strand, within Synpcc7942_0417at 407.756 kb on - strand, within Synpcc7942_0417at 407.756 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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405,391 + Synpcc7942_0415 0.23 -1.7
405,419 + Synpcc7942_0415 0.26 -1.2
405,419 + Synpcc7942_0415 0.26 +1.5
405,437 + Synpcc7942_0415 0.28 -1.3
405,438 + Synpcc7942_0415 0.28 -3.0
405,443 + Synpcc7942_0415 0.28 -1.4
405,443 + Synpcc7942_0415 0.28 +0.9
405,446 - Synpcc7942_0415 0.28 +1.7
405,473 + Synpcc7942_0415 0.31 +1.2
405,473 + Synpcc7942_0415 0.31 +0.0
405,511 - Synpcc7942_0415 0.35 +2.8
405,538 + Synpcc7942_0415 0.38 -0.3
405,541 - Synpcc7942_0415 0.38 +3.9
405,543 + Synpcc7942_0415 0.38 -1.2
405,543 + Synpcc7942_0415 0.38 -0.7
405,546 - Synpcc7942_0415 0.39 +1.9
405,591 - Synpcc7942_0415 0.43 +0.8
405,608 - Synpcc7942_0415 0.45 +1.0
405,627 - Synpcc7942_0415 0.47 -1.5
405,634 + Synpcc7942_0415 0.48 -0.9
405,634 + Synpcc7942_0415 0.48 -0.5
405,634 + Synpcc7942_0415 0.48 -0.5
405,634 + Synpcc7942_0415 0.48 +0.1
405,642 - Synpcc7942_0415 0.48 -2.7
405,642 - Synpcc7942_0415 0.48 +0.7
405,646 + Synpcc7942_0415 0.49 +5.2
405,654 - Synpcc7942_0415 0.50 +1.3
405,654 - Synpcc7942_0415 0.50 +0.2
405,654 - Synpcc7942_0415 0.50 +0.1
405,654 - Synpcc7942_0415 0.50 -1.3
405,759 - Synpcc7942_0415 0.60 +0.9
405,759 - Synpcc7942_0415 0.60 +2.4
405,793 + Synpcc7942_0415 0.64 +1.5
405,799 - Synpcc7942_0415 0.65 -1.7
405,833 - Synpcc7942_0415 0.68 +5.2
405,833 - Synpcc7942_0415 0.68 +3.2
405,844 + Synpcc7942_0415 0.69 -2.1
405,844 + Synpcc7942_0415 0.69 +1.2
405,849 + Synpcc7942_0415 0.70 -1.4
405,850 + Synpcc7942_0415 0.70 -0.5
405,856 + Synpcc7942_0415 0.70 -0.5
405,856 + Synpcc7942_0415 0.70 -0.3
405,884 + Synpcc7942_0415 0.73 +3.7
405,884 + Synpcc7942_0415 0.73 -0.6
405,884 + Synpcc7942_0415 0.73 -0.5
405,904 + Synpcc7942_0415 0.75 +1.0
405,907 - Synpcc7942_0415 0.76 -1.3
405,918 + Synpcc7942_0415 0.77 -0.1
405,939 + Synpcc7942_0415 0.79 +2.2
405,955 + Synpcc7942_0415 0.80 +3.7
405,958 + Synpcc7942_0415 0.81 +1.5
405,958 + -0.8
405,958 + Synpcc7942_0415 0.81 -2.1
406,008 - Synpcc7942_0415 0.86 +0.1
406,051 + +0.5
406,056 + +3.8
406,056 + +2.0
406,062 + +0.8
406,090 + -1.4
406,107 - -0.5
406,107 - -1.5
406,117 - -2.5
406,131 + +1.1
406,139 - +1.9
406,153 + +0.3
406,155 + +4.5
406,155 + -1.3
406,161 - -2.3
406,163 - +0.7
406,163 - +2.3
406,165 + +1.5
406,172 + +2.7
406,173 - +1.8
406,173 - +1.7
406,180 - +0.7
406,222 - +0.3
406,245 + +0.1
406,263 - +0.1
406,484 + Synpcc7942_0416 0.25 -2.5
406,500 + Synpcc7942_0416 0.29 -1.8
406,533 + +0.5
406,547 + +1.1
406,555 - Synpcc7942_0416 0.43 -2.4
406,555 - Synpcc7942_0416 0.43 -3.3
406,562 + Synpcc7942_0416 0.45 -4.3
406,583 + Synpcc7942_0416 0.51 -2.8
406,659 + Synpcc7942_0416 0.70 -1.3
406,667 - Synpcc7942_0416 0.72 -3.2
406,690 - Synpcc7942_0416 0.78 -0.9
406,690 - Synpcc7942_0416 0.78 -1.8
406,716 + Synpcc7942_0416 0.85 -2.0
406,724 - Synpcc7942_0416 0.87 -0.1
406,773 + -3.2
406,798 + -1.1
406,808 - -3.3
406,868 - -1.7
406,934 + -2.9
406,987 - -2.9
407,036 + Synpcc7942_0417 0.12 -2.7
407,039 - Synpcc7942_0417 0.12 -5.2
407,041 + Synpcc7942_0417 0.13 -2.1
407,044 - Synpcc7942_0417 0.13 -1.4
407,044 - Synpcc7942_0417 0.13 -4.1
407,049 - Synpcc7942_0417 0.13 -0.5
407,088 - Synpcc7942_0417 0.16 -3.8
407,132 + Synpcc7942_0417 0.19 -4.7
407,174 + Synpcc7942_0417 0.21 -1.4
407,184 + Synpcc7942_0417 0.22 -2.4
407,197 - -0.3
407,204 + Synpcc7942_0417 0.23 -1.8
407,283 + Synpcc7942_0417 0.29 -1.9
407,350 + Synpcc7942_0417 0.33 -2.8
407,376 + Synpcc7942_0417 0.35 -3.0
407,449 + Synpcc7942_0417 0.40 -2.8
407,556 + -1.3
407,612 + Synpcc7942_0417 0.50 -1.0
407,624 + Synpcc7942_0417 0.51 -4.1
407,624 + Synpcc7942_0417 0.51 -2.3
407,624 + Synpcc7942_0417 0.51 -1.8
407,657 - Synpcc7942_0417 0.53 -2.9
407,732 + -0.3
407,733 + Synpcc7942_0417 0.58 -3.2
407,740 - Synpcc7942_0417 0.59 +1.5
407,740 - Synpcc7942_0417 0.59 -2.9
407,756 - Synpcc7942_0417 0.60 -5.2
407,756 - -0.3

Or see this region's nucleotide sequence