Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0412 and ndhL are separated by 0 nucleotides ndhL and Synpcc7942_0414 are separated by 247 nucleotides Synpcc7942_0414 and Synpcc7942_0415 overlap by 21 nucleotides
Synpcc7942_0412: Synpcc7942_0412 - hypothetical protein, at 403,022 to 403,351
_0412
Synpcc7942_0413: ndhL - hypothetical protein, at 403,352 to 403,768
ndhL
Synpcc7942_0414: Synpcc7942_0414 - hypothetical protein, at 404,016 to 405,188
_0414
Synpcc7942_0415: Synpcc7942_0415 - hypothetical protein, at 405,168 to 406,145
_0415
Position (kb) 404
405
406 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 403.028 kb on - strand at 403.070 kb on - strand, within Synpcc7942_0412 at 403.074 kb on + strand, within Synpcc7942_0412 at 403.091 kb on - strand, within Synpcc7942_0412 at 403.176 kb on + strand, within Synpcc7942_0412 at 403.210 kb on + strand, within Synpcc7942_0412 at 403.218 kb on - strand, within Synpcc7942_0412 at 403.221 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.297 kb on - strand, within Synpcc7942_0412 at 403.559 kb on + strand, within ndhL at 403.570 kb on + strand, within ndhL at 403.572 kb on + strand, within ndhL at 403.572 kb on + strand, within ndhL at 403.580 kb on - strand, within ndhL at 403.580 kb on - strand, within ndhL at 403.595 kb on + strand, within ndhL at 403.968 kb on + strand at 403.994 kb on - strand at 404.005 kb on - strand at 404.093 kb on - strand at 404.139 kb on - strand, within Synpcc7942_0414 at 404.139 kb on - strand, within Synpcc7942_0414 at 404.148 kb on + strand, within Synpcc7942_0414 at 404.155 kb on + strand, within Synpcc7942_0414 at 404.163 kb on - strand, within Synpcc7942_0414 at 404.163 kb on - strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.193 kb on - strand, within Synpcc7942_0414 at 404.249 kb on + strand, within Synpcc7942_0414 at 404.253 kb on + strand, within Synpcc7942_0414 at 404.261 kb on + strand, within Synpcc7942_0414 at 404.261 kb on - strand, within Synpcc7942_0414 at 404.267 kb on - strand, within Synpcc7942_0414 at 404.317 kb on - strand, within Synpcc7942_0414 at 404.392 kb on + strand, within Synpcc7942_0414 at 404.443 kb on + strand, within Synpcc7942_0414 at 404.448 kb on + strand, within Synpcc7942_0414 at 404.451 kb on - strand, within Synpcc7942_0414 at 404.461 kb on - strand, within Synpcc7942_0414 at 404.511 kb on - strand, within Synpcc7942_0414 at 404.522 kb on + strand, within Synpcc7942_0414 at 404.522 kb on + strand, within Synpcc7942_0414 at 404.523 kb on + strand, within Synpcc7942_0414 at 404.523 kb on + strand, within Synpcc7942_0414 at 404.530 kb on - strand, within Synpcc7942_0414 at 404.531 kb on - strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.576 kb on - strand, within Synpcc7942_0414 at 404.667 kb on - strand, within Synpcc7942_0414 at 404.691 kb on - strand, within Synpcc7942_0414 at 404.729 kb on + strand, within Synpcc7942_0414 at 404.734 kb on - strand, within Synpcc7942_0414 at 404.742 kb on - strand, within Synpcc7942_0414 at 404.742 kb on - strand, within Synpcc7942_0414 at 404.746 kb on + strand, within Synpcc7942_0414 at 404.769 kb on + strand, within Synpcc7942_0414 at 404.772 kb on - strand, within Synpcc7942_0414 at 404.772 kb on - strand, within Synpcc7942_0414 at 404.796 kb on - strand, within Synpcc7942_0414 at 404.800 kb on + strand, within Synpcc7942_0414 at 404.805 kb on + strand, within Synpcc7942_0414 at 404.823 kb on + strand, within Synpcc7942_0414 at 404.831 kb on - strand, within Synpcc7942_0414 at 404.860 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.954 kb on - strand, within Synpcc7942_0414 at 404.958 kb on + strand, within Synpcc7942_0414 at 404.961 kb on - strand, within Synpcc7942_0414 at 404.974 kb on - strand, within Synpcc7942_0414 at 404.976 kb on + strand, within Synpcc7942_0414 at 404.978 kb on + strand, within Synpcc7942_0414 at 405.019 kb on + strand, within Synpcc7942_0414 at 405.022 kb on - strand, within Synpcc7942_0414 at 405.027 kb on + strand, within Synpcc7942_0414 at 405.076 kb on - strand at 405.081 kb on + strand at 405.081 kb on + strand at 405.145 kb on + strand at 405.183 kb on + strand at 405.206 kb on + strand at 405.206 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.228 kb on - strand at 405.228 kb on - strand at 405.252 kb on + strand at 405.278 kb on + strand at 405.296 kb on - strand, within Synpcc7942_0415 at 405.323 kb on + strand, within Synpcc7942_0415 at 405.337 kb on + strand, within Synpcc7942_0415 at 405.353 kb on + strand, within Synpcc7942_0415 at 405.355 kb on - strand, within Synpcc7942_0415 at 405.368 kb on + strand, within Synpcc7942_0415 at 405.378 kb on + strand, within Synpcc7942_0415 at 405.391 kb on + strand, within Synpcc7942_0415 at 405.419 kb on + strand, within Synpcc7942_0415 at 405.419 kb on + strand, within Synpcc7942_0415 at 405.437 kb on + strand, within Synpcc7942_0415 at 405.438 kb on + strand, within Synpcc7942_0415 at 405.443 kb on + strand, within Synpcc7942_0415 at 405.443 kb on + strand, within Synpcc7942_0415 at 405.446 kb on - strand, within Synpcc7942_0415 at 405.473 kb on + strand, within Synpcc7942_0415 at 405.473 kb on + strand, within Synpcc7942_0415 at 405.511 kb on - strand, within Synpcc7942_0415 at 405.538 kb on + strand, within Synpcc7942_0415 at 405.541 kb on - strand, within Synpcc7942_0415 at 405.543 kb on + strand, within Synpcc7942_0415 at 405.543 kb on + strand, within Synpcc7942_0415 at 405.546 kb on - strand, within Synpcc7942_0415 at 405.591 kb on - strand, within Synpcc7942_0415 at 405.608 kb on - strand, within Synpcc7942_0415 at 405.627 kb on - strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.642 kb on - strand, within Synpcc7942_0415 at 405.642 kb on - strand, within Synpcc7942_0415 at 405.646 kb on + strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.759 kb on - strand, within Synpcc7942_0415 at 405.759 kb on - strand, within Synpcc7942_0415 at 405.793 kb on + strand, within Synpcc7942_0415 at 405.799 kb on - strand, within Synpcc7942_0415 at 405.833 kb on - strand, within Synpcc7942_0415 at 405.833 kb on - strand, within Synpcc7942_0415 at 405.844 kb on + strand, within Synpcc7942_0415 at 405.844 kb on + strand, within Synpcc7942_0415 at 405.849 kb on + strand, within Synpcc7942_0415 at 405.850 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.904 kb on + strand, within Synpcc7942_0415 at 405.907 kb on - strand, within Synpcc7942_0415 at 405.918 kb on + strand, within Synpcc7942_0415 at 405.939 kb on + strand, within Synpcc7942_0415 at 405.955 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand at 405.958 kb on + strand, within Synpcc7942_0415 at 406.008 kb on - strand, within Synpcc7942_0415 at 406.051 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.062 kb on + strand at 406.090 kb on + strand at 406.107 kb on - strand at 406.107 kb on - strand at 406.117 kb on - strand at 406.131 kb on + strand at 406.139 kb on - strand at 406.153 kb on + strand at 406.155 kb on + strand at 406.155 kb on + strand at 406.161 kb on - strand at 406.163 kb on - strand at 406.163 kb on - strand at 406.165 kb on + strand at 406.172 kb on + strand at 406.173 kb on - strand at 406.173 kb on - strand at 406.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 403,028 - -1.8 403,070 - Synpcc7942_0412 0.15 +3.1 403,074 + Synpcc7942_0412 0.16 -0.5 403,091 - Synpcc7942_0412 0.21 +1.6 403,176 + Synpcc7942_0412 0.47 +0.2 403,210 + Synpcc7942_0412 0.57 -1.1 403,218 - Synpcc7942_0412 0.59 +0.1 403,221 + Synpcc7942_0412 0.60 -3.5 403,287 + Synpcc7942_0412 0.80 -0.8 403,287 + Synpcc7942_0412 0.80 -1.1 403,287 + Synpcc7942_0412 0.80 +0.8 403,295 - Synpcc7942_0412 0.83 -2.5 403,295 - Synpcc7942_0412 0.83 -1.6 403,295 - Synpcc7942_0412 0.83 -3.7 403,295 - Synpcc7942_0412 0.83 -1.6 403,297 - Synpcc7942_0412 0.83 -1.1 403,559 + ndhL Synpcc7942_0413 0.50 -2.1 403,570 + ndhL Synpcc7942_0413 0.52 +0.1 403,572 + ndhL Synpcc7942_0413 0.53 +2.1 403,572 + ndhL Synpcc7942_0413 0.53 -2.8 403,580 - ndhL Synpcc7942_0413 0.55 -2.5 403,580 - ndhL Synpcc7942_0413 0.55 -1.8 403,595 + ndhL Synpcc7942_0413 0.58 +3.9 403,968 + -1.4 403,994 - +1.3 404,005 - +2.6 404,093 - -1.5 404,139 - Synpcc7942_0414 0.10 -3.0 404,139 - Synpcc7942_0414 0.10 -2.4 404,148 + Synpcc7942_0414 0.11 -1.3 404,155 + Synpcc7942_0414 0.12 -1.9 404,163 - Synpcc7942_0414 0.13 -1.4 404,163 - Synpcc7942_0414 0.13 -2.9 404,186 + Synpcc7942_0414 0.14 -1.8 404,186 + Synpcc7942_0414 0.14 -1.9 404,193 - Synpcc7942_0414 0.15 -3.6 404,249 + Synpcc7942_0414 0.20 -3.0 404,253 + Synpcc7942_0414 0.20 -2.0 404,261 + Synpcc7942_0414 0.21 -3.5 404,261 - Synpcc7942_0414 0.21 -0.8 404,267 - Synpcc7942_0414 0.21 -2.0 404,317 - Synpcc7942_0414 0.26 -4.4 404,392 + Synpcc7942_0414 0.32 -3.8 404,443 + Synpcc7942_0414 0.36 -3.2 404,448 + Synpcc7942_0414 0.37 -2.5 404,451 - Synpcc7942_0414 0.37 -2.3 404,461 - Synpcc7942_0414 0.38 -3.7 404,511 - Synpcc7942_0414 0.42 -1.8 404,522 + Synpcc7942_0414 0.43 -4.0 404,522 + Synpcc7942_0414 0.43 -1.9 404,523 + Synpcc7942_0414 0.43 -3.9 404,523 + Synpcc7942_0414 0.43 -3.9 404,530 - Synpcc7942_0414 0.44 -2.8 404,531 - Synpcc7942_0414 0.44 -2.5 404,568 + Synpcc7942_0414 0.47 -4.3 404,568 + Synpcc7942_0414 0.47 -1.9 404,568 + Synpcc7942_0414 0.47 -2.0 404,576 - Synpcc7942_0414 0.48 -4.1 404,667 - Synpcc7942_0414 0.55 -1.4 404,691 - Synpcc7942_0414 0.58 -5.1 404,729 + Synpcc7942_0414 0.61 -1.6 404,734 - Synpcc7942_0414 0.61 -3.9 404,742 - Synpcc7942_0414 0.62 -2.8 404,742 - Synpcc7942_0414 0.62 -2.9 404,746 + Synpcc7942_0414 0.62 -4.9 404,769 + Synpcc7942_0414 0.64 -4.5 404,772 - Synpcc7942_0414 0.64 -2.1 404,772 - Synpcc7942_0414 0.64 -3.9 404,796 - Synpcc7942_0414 0.66 -5.1 404,800 + Synpcc7942_0414 0.67 -2.0 404,805 + Synpcc7942_0414 0.67 -0.6 404,823 + Synpcc7942_0414 0.69 -1.6 404,831 - Synpcc7942_0414 0.69 -0.9 404,860 + Synpcc7942_0414 0.72 -3.6 404,953 + Synpcc7942_0414 0.80 -2.4 404,953 + Synpcc7942_0414 0.80 -0.9 404,953 + Synpcc7942_0414 0.80 -4.6 404,954 - Synpcc7942_0414 0.80 -2.0 404,958 + Synpcc7942_0414 0.80 -1.3 404,961 - Synpcc7942_0414 0.81 -1.3 404,974 - Synpcc7942_0414 0.82 -4.2 404,976 + Synpcc7942_0414 0.82 -1.4 404,978 + Synpcc7942_0414 0.82 -2.9 405,019 + Synpcc7942_0414 0.86 -3.8 405,022 - Synpcc7942_0414 0.86 -3.0 405,027 + Synpcc7942_0414 0.86 -4.8 405,076 - -5.5 405,081 + -3.3 405,081 + -2.9 405,145 + +1.6 405,183 + +1.4 405,206 + +1.3 405,206 + -0.8 405,208 + +1.5 405,208 + -1.9 405,208 + -1.8 405,208 + +8.2 405,208 + +0.2 405,208 + +2.4 405,208 + +1.5 405,208 + -1.4 405,208 + +1.9 405,208 + +0.0 405,208 + +1.3 405,208 + +0.2 405,208 + -0.8 405,208 + -1.1 405,208 + +2.4 405,216 - +1.5 405,216 - +4.2 405,216 - -1.9 405,216 - +0.4 405,216 - +2.4 405,216 - -2.4 405,216 - -0.8 405,216 - -1.7 405,216 - +1.8 405,228 - -2.0 405,228 - +3.0 405,252 + +0.6 405,278 + +3.0 405,296 - Synpcc7942_0415 0.13 +0.0 405,323 + Synpcc7942_0415 0.16 -0.7 405,337 + Synpcc7942_0415 0.17 -3.1 405,353 + Synpcc7942_0415 0.19 -1.0 405,355 - Synpcc7942_0415 0.19 +3.6 405,368 + Synpcc7942_0415 0.20 -1.3 405,378 + Synpcc7942_0415 0.21 +0.9 405,391 + Synpcc7942_0415 0.23 -1.7 405,419 + Synpcc7942_0415 0.26 -1.2 405,419 + Synpcc7942_0415 0.26 +1.5 405,437 + Synpcc7942_0415 0.28 -1.3 405,438 + Synpcc7942_0415 0.28 -3.0 405,443 + Synpcc7942_0415 0.28 -1.4 405,443 + Synpcc7942_0415 0.28 +0.9 405,446 - Synpcc7942_0415 0.28 +1.7 405,473 + Synpcc7942_0415 0.31 +1.2 405,473 + Synpcc7942_0415 0.31 +0.0 405,511 - Synpcc7942_0415 0.35 +2.8 405,538 + Synpcc7942_0415 0.38 -0.3 405,541 - Synpcc7942_0415 0.38 +3.9 405,543 + Synpcc7942_0415 0.38 -1.2 405,543 + Synpcc7942_0415 0.38 -0.7 405,546 - Synpcc7942_0415 0.39 +1.9 405,591 - Synpcc7942_0415 0.43 +0.8 405,608 - Synpcc7942_0415 0.45 +1.0 405,627 - Synpcc7942_0415 0.47 -1.5 405,634 + Synpcc7942_0415 0.48 -0.9 405,634 + Synpcc7942_0415 0.48 -0.5 405,634 + Synpcc7942_0415 0.48 -0.5 405,634 + Synpcc7942_0415 0.48 +0.1 405,642 - Synpcc7942_0415 0.48 -2.7 405,642 - Synpcc7942_0415 0.48 +0.7 405,646 + Synpcc7942_0415 0.49 +5.2 405,654 - Synpcc7942_0415 0.50 +1.3 405,654 - Synpcc7942_0415 0.50 +0.2 405,654 - Synpcc7942_0415 0.50 +0.1 405,654 - Synpcc7942_0415 0.50 -1.3 405,759 - Synpcc7942_0415 0.60 +0.9 405,759 - Synpcc7942_0415 0.60 +2.4 405,793 + Synpcc7942_0415 0.64 +1.5 405,799 - Synpcc7942_0415 0.65 -1.7 405,833 - Synpcc7942_0415 0.68 +5.2 405,833 - Synpcc7942_0415 0.68 +3.2 405,844 + Synpcc7942_0415 0.69 -2.1 405,844 + Synpcc7942_0415 0.69 +1.2 405,849 + Synpcc7942_0415 0.70 -1.4 405,850 + Synpcc7942_0415 0.70 -0.5 405,856 + Synpcc7942_0415 0.70 -0.5 405,856 + Synpcc7942_0415 0.70 -0.3 405,884 + Synpcc7942_0415 0.73 +3.7 405,884 + Synpcc7942_0415 0.73 -0.6 405,884 + Synpcc7942_0415 0.73 -0.5 405,904 + Synpcc7942_0415 0.75 +1.0 405,907 - Synpcc7942_0415 0.76 -1.3 405,918 + Synpcc7942_0415 0.77 -0.1 405,939 + Synpcc7942_0415 0.79 +2.2 405,955 + Synpcc7942_0415 0.80 +3.7 405,958 + Synpcc7942_0415 0.81 +1.5 405,958 + -0.8 405,958 + Synpcc7942_0415 0.81 -2.1 406,008 - Synpcc7942_0415 0.86 +0.1 406,051 + +0.5 406,056 + +3.8 406,056 + +2.0 406,062 + +0.8 406,090 + -1.4 406,107 - -0.5 406,107 - -1.5 406,117 - -2.5 406,131 + +1.1 406,139 - +1.9 406,153 + +0.3 406,155 + +4.5 406,155 + -1.3 406,161 - -2.3 406,163 - +0.7 406,163 - +2.3 406,165 + +1.5 406,172 + +2.7 406,173 - +1.8 406,173 - +1.7 406,180 - +0.7
Or see this region's nucleotide sequence