Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0399 and trpG are separated by 33 nucleotides trpG and dgkA are separated by 64 nucleotides
Synpcc7942_0399: Synpcc7942_0399 - hypothetical protein, at 393,793 to 394,545
_0399
Synpcc7942_0400: trpG - anthranilate synthase, component II, at 394,579 to 395,181
trpG
Synpcc7942_0401: dgkA - diacylglycerol kinase, at 395,246 to 395,731
dgkA
Position (kb) 395
396 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 394.279 kb on + strand, within Synpcc7942_0399 at 394.307 kb on - strand, within Synpcc7942_0399 at 394.322 kb on - strand, within Synpcc7942_0399 at 394.342 kb on + strand, within Synpcc7942_0399 at 394.367 kb on + strand, within Synpcc7942_0399 at 394.431 kb on - strand, within Synpcc7942_0399 at 394.456 kb on + strand, within Synpcc7942_0399 at 394.457 kb on + strand, within Synpcc7942_0399 at 394.459 kb on - strand, within Synpcc7942_0399 at 394.462 kb on + strand, within Synpcc7942_0399 at 394.477 kb on + strand at 394.570 kb on + strand at 395.240 kb on - strand at 395.263 kb on + strand at 395.276 kb on - strand at 395.293 kb on - strand at 395.293 kb on - strand at 395.298 kb on + strand, within dgkA at 395.324 kb on + strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.416 kb on - strand at 395.416 kb on - strand, within dgkA at 395.416 kb on - strand, within dgkA at 395.418 kb on + strand at 395.418 kb on + strand, within dgkA at 395.418 kb on + strand, within dgkA at 395.423 kb on + strand, within dgkA at 395.426 kb on - strand, within dgkA at 395.452 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.466 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.476 kb on + strand, within dgkA at 395.481 kb on + strand, within dgkA at 395.488 kb on + strand, within dgkA at 395.491 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.527 kb on + strand, within dgkA at 395.535 kb on - strand, within dgkA at 395.554 kb on + strand, within dgkA at 395.554 kb on + strand, within dgkA at 395.564 kb on - strand, within dgkA at 395.570 kb on + strand, within dgkA at 395.573 kb on - strand, within dgkA at 395.578 kb on - strand, within dgkA at 395.578 kb on - strand, within dgkA at 395.578 kb on - strand, within dgkA at 395.598 kb on + strand at 395.606 kb on - strand, within dgkA at 395.606 kb on - strand, within dgkA at 395.616 kb on - strand at 395.621 kb on + strand, within dgkA at 395.656 kb on + strand, within dgkA at 395.666 kb on + strand, within dgkA at 395.674 kb on - strand, within dgkA at 395.677 kb on + strand, within dgkA at 395.677 kb on + strand, within dgkA at 395.677 kb on + strand, within dgkA at 395.685 kb on - strand at 395.699 kb on - strand at 395.699 kb on - strand at 395.700 kb on + strand at 395.700 kb on + strand at 395.701 kb on + strand at 395.708 kb on - strand at 395.721 kb on - strand at 395.721 kb on - strand at 395.721 kb on - strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.725 kb on + strand at 395.731 kb on - strand at 395.731 kb on - strand at 395.746 kb on + strand at 395.746 kb on + strand at 395.753 kb on - strand at 395.793 kb on + strand at 395.805 kb on + strand at 395.805 kb on + strand at 395.806 kb on + strand at 395.806 kb on + strand at 395.813 kb on - strand at 395.898 kb on + strand at 395.903 kb on + strand at 395.906 kb on - strand at 395.906 kb on - strand at 396.013 kb on + strand at 396.418 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 394,279 + Synpcc7942_0399 0.65 -3.7 394,307 - Synpcc7942_0399 0.68 -1.4 394,322 - Synpcc7942_0399 0.70 -2.8 394,342 + Synpcc7942_0399 0.73 -3.4 394,367 + Synpcc7942_0399 0.76 -1.5 394,431 - Synpcc7942_0399 0.85 -0.3 394,456 + Synpcc7942_0399 0.88 -3.1 394,457 + Synpcc7942_0399 0.88 -1.1 394,459 - Synpcc7942_0399 0.88 -3.5 394,462 + Synpcc7942_0399 0.89 -1.2 394,477 + -2.1 394,570 + -2.3 395,240 - +1.8 395,263 + -3.2 395,276 - -0.7 395,293 - -4.1 395,293 - -2.9 395,298 + dgkA Synpcc7942_0401 0.11 -5.6 395,324 + dgkA Synpcc7942_0401 0.16 -5.8 395,332 - dgkA Synpcc7942_0401 0.18 -5.0 395,332 - dgkA Synpcc7942_0401 0.18 -1.5 395,332 - dgkA Synpcc7942_0401 0.18 -1.3 395,332 - dgkA Synpcc7942_0401 0.18 -2.6 395,416 - -2.0 395,416 - dgkA Synpcc7942_0401 0.35 -4.2 395,416 - dgkA Synpcc7942_0401 0.35 -5.5 395,418 + -1.7 395,418 + dgkA Synpcc7942_0401 0.35 -2.7 395,418 + dgkA Synpcc7942_0401 0.35 -4.4 395,423 + dgkA Synpcc7942_0401 0.36 -3.8 395,426 - dgkA Synpcc7942_0401 0.37 -4.0 395,452 + dgkA Synpcc7942_0401 0.42 -4.1 395,459 + dgkA Synpcc7942_0401 0.44 -5.9 395,459 + dgkA Synpcc7942_0401 0.44 -1.8 395,459 + dgkA Synpcc7942_0401 0.44 -3.8 395,466 - dgkA Synpcc7942_0401 0.45 -4.5 395,467 - dgkA Synpcc7942_0401 0.45 -4.1 395,467 - dgkA Synpcc7942_0401 0.45 -2.4 395,467 - dgkA Synpcc7942_0401 0.45 -2.3 395,467 - dgkA Synpcc7942_0401 0.45 -5.1 395,476 + dgkA Synpcc7942_0401 0.47 -4.4 395,481 + dgkA Synpcc7942_0401 0.48 -2.7 395,488 + dgkA Synpcc7942_0401 0.50 -4.8 395,491 - dgkA Synpcc7942_0401 0.50 -3.0 395,496 - dgkA Synpcc7942_0401 0.51 -5.5 395,496 - dgkA Synpcc7942_0401 0.51 -3.7 395,496 - dgkA Synpcc7942_0401 0.51 -4.5 395,527 + dgkA Synpcc7942_0401 0.58 -4.3 395,535 - dgkA Synpcc7942_0401 0.59 -2.8 395,554 + dgkA Synpcc7942_0401 0.63 -1.9 395,554 + dgkA Synpcc7942_0401 0.63 -2.9 395,564 - dgkA Synpcc7942_0401 0.65 -2.9 395,570 + dgkA Synpcc7942_0401 0.67 -3.7 395,573 - dgkA Synpcc7942_0401 0.67 -3.3 395,578 - dgkA Synpcc7942_0401 0.68 -3.7 395,578 - dgkA Synpcc7942_0401 0.68 -4.3 395,578 - dgkA Synpcc7942_0401 0.68 -2.0 395,598 + -3.0 395,606 - dgkA Synpcc7942_0401 0.74 +0.0 395,606 - dgkA Synpcc7942_0401 0.74 -3.4 395,616 - -1.7 395,621 + dgkA Synpcc7942_0401 0.77 -3.6 395,656 + dgkA Synpcc7942_0401 0.84 -4.9 395,666 + dgkA Synpcc7942_0401 0.86 -3.7 395,674 - dgkA Synpcc7942_0401 0.88 -2.0 395,677 + dgkA Synpcc7942_0401 0.89 -4.3 395,677 + dgkA Synpcc7942_0401 0.89 -3.9 395,677 + dgkA Synpcc7942_0401 0.89 -2.0 395,685 - -2.7 395,699 - -2.9 395,699 - -2.9 395,700 + +0.5 395,700 + +1.2 395,701 + +2.3 395,708 - -0.2 395,721 - +0.5 395,721 - +1.1 395,721 - +1.8 395,723 + -0.9 395,723 + -0.5 395,723 + +2.1 395,723 + +2.1 395,723 + -0.7 395,723 + -0.5 395,723 + +1.0 395,725 + -2.4 395,731 - +2.6 395,731 - +3.0 395,746 + -1.4 395,746 + +0.2 395,753 - +0.6 395,793 + -1.3 395,805 + +2.6 395,805 + -2.0 395,806 + -1.3 395,806 + -2.0 395,813 - +1.1 395,898 + -1.7 395,903 + -0.1 395,906 - +0.5 395,906 - +0.8 396,013 + +0.8 396,418 + -1.4
Or see this region's nucleotide sequence