Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purH and lim17 are separated by 37 nucleotides lim17 and Synpcc7942_0398 are separated by 66 nucleotides Synpcc7942_0398 and Synpcc7942_0399 are separated by 344 nucleotides
Synpcc7942_0396: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 389,953 to 391,494
purH
Synpcc7942_0397: lim17 - putative neutral invertase, at 391,532 to 392,923
lim17
Synpcc7942_0398: Synpcc7942_0398 - hypothetical protein, at 392,990 to 393,448
_0398
Synpcc7942_0399: Synpcc7942_0399 - hypothetical protein, at 393,793 to 394,545
_0399
Position (kb) 391
392
393 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 391.488 kb on + strand at 391.495 kb on + strand at 391.542 kb on - strand at 391.552 kb on - strand at 391.555 kb on - strand at 391.560 kb on - strand at 391.561 kb on + strand at 391.562 kb on - strand at 391.567 kb on - strand at 391.569 kb on - strand at 391.576 kb on + strand at 391.579 kb on - strand at 391.581 kb on - strand at 391.628 kb on - strand at 391.644 kb on + strand at 391.654 kb on + strand at 391.654 kb on + strand at 391.661 kb on + strand at 391.661 kb on + strand at 391.662 kb on - strand at 391.662 kb on - strand at 391.662 kb on - strand at 391.662 kb on - strand at 391.669 kb on - strand at 391.730 kb on - strand, within lim17 at 391.757 kb on + strand, within lim17 at 391.775 kb on - strand, within lim17 at 391.787 kb on + strand, within lim17 at 391.800 kb on - strand, within lim17 at 391.802 kb on + strand, within lim17 at 391.802 kb on + strand, within lim17 at 391.802 kb on + strand, within lim17 at 391.815 kb on + strand, within lim17 at 391.836 kb on + strand, within lim17 at 391.850 kb on - strand, within lim17 at 391.888 kb on + strand, within lim17 at 391.903 kb on + strand, within lim17 at 391.910 kb on - strand, within lim17 at 391.911 kb on - strand, within lim17 at 391.915 kb on - strand, within lim17 at 391.950 kb on + strand, within lim17 at 391.967 kb on + strand, within lim17 at 391.970 kb on - strand, within lim17 at 391.972 kb on + strand, within lim17 at 391.972 kb on + strand, within lim17 at 391.988 kb on - strand, within lim17 at 391.992 kb on + strand, within lim17 at 391.999 kb on - strand, within lim17 at 391.999 kb on - strand, within lim17 at 391.999 kb on - strand, within lim17 at 392.000 kb on - strand, within lim17 at 392.002 kb on + strand, within lim17 at 392.018 kb on - strand, within lim17 at 392.045 kb on + strand, within lim17 at 392.062 kb on - strand, within lim17 at 392.068 kb on + strand, within lim17 at 392.120 kb on - strand, within lim17 at 392.128 kb on + strand, within lim17 at 392.133 kb on - strand, within lim17 at 392.143 kb on + strand, within lim17 at 392.145 kb on + strand, within lim17 at 392.145 kb on + strand, within lim17 at 392.146 kb on - strand, within lim17 at 392.146 kb on - strand, within lim17 at 392.159 kb on + strand, within lim17 at 392.161 kb on + strand, within lim17 at 392.176 kb on + strand, within lim17 at 392.176 kb on + strand, within lim17 at 392.184 kb on - strand, within lim17 at 392.186 kb on + strand, within lim17 at 392.189 kb on - strand, within lim17 at 392.192 kb on + strand, within lim17 at 392.200 kb on - strand, within lim17 at 392.207 kb on - strand, within lim17 at 392.223 kb on + strand, within lim17 at 392.240 kb on - strand, within lim17 at 392.240 kb on - strand, within lim17 at 392.305 kb on + strand, within lim17 at 392.306 kb on - strand, within lim17 at 392.306 kb on - strand, within lim17 at 392.306 kb on - strand, within lim17 at 392.313 kb on + strand, within lim17 at 392.313 kb on - strand, within lim17 at 392.314 kb on - strand, within lim17 at 392.321 kb on - strand, within lim17 at 392.366 kb on + strand, within lim17 at 392.369 kb on + strand, within lim17 at 392.386 kb on + strand, within lim17 at 392.391 kb on + strand, within lim17 at 392.423 kb on - strand, within lim17 at 392.534 kb on + strand, within lim17 at 392.536 kb on + strand, within lim17 at 392.547 kb on - strand, within lim17 at 392.602 kb on + strand, within lim17 at 392.610 kb on - strand, within lim17 at 392.610 kb on - strand, within lim17 at 392.647 kb on - strand, within lim17 at 392.663 kb on + strand, within lim17 at 392.671 kb on - strand, within lim17 at 392.671 kb on - strand, within lim17 at 392.671 kb on - strand, within lim17 at 392.736 kb on + strand at 392.736 kb on + strand, within lim17 at 392.744 kb on - strand, within lim17 at 392.746 kb on + strand, within lim17 at 392.746 kb on - strand, within lim17 at 392.755 kb on + strand, within lim17 at 392.756 kb on - strand, within lim17 at 392.766 kb on - strand, within lim17 at 392.772 kb on + strand, within lim17 at 392.777 kb on + strand, within lim17 at 392.779 kb on + strand, within lim17 at 392.780 kb on - strand, within lim17 at 392.787 kb on - strand at 392.787 kb on - strand at 392.787 kb on - strand at 392.787 kb on - strand at 392.787 kb on - strand at 392.787 kb on - strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.797 kb on - strand at 392.833 kb on + strand at 392.833 kb on + strand at 392.862 kb on + strand at 392.880 kb on - strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.883 kb on + strand at 392.889 kb on - strand at 392.889 kb on - strand at 392.934 kb on + strand at 392.961 kb on - strand at 392.961 kb on - strand at 392.963 kb on + strand at 392.971 kb on - strand at 392.971 kb on - strand at 392.981 kb on + strand at 392.999 kb on + strand at 393.060 kb on + strand, within Synpcc7942_0398 at 393.171 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.196 kb on + strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.226 kb on - strand, within Synpcc7942_0398 at 393.280 kb on - strand, within Synpcc7942_0398 at 393.308 kb on + strand at 393.308 kb on + strand, within Synpcc7942_0398 at 393.308 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.380 kb on + strand, within Synpcc7942_0398 at 393.386 kb on - strand, within Synpcc7942_0398 at 393.410 kb on + strand at 393.425 kb on - strand at 393.446 kb on - strand at 393.465 kb on + strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.502 kb on - strand at 393.541 kb on - strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.592 kb on + strand at 393.592 kb on + strand at 393.592 kb on + strand at 393.603 kb on + strand at 393.604 kb on + strand at 393.604 kb on + strand at 393.606 kb on - strand at 393.611 kb on - strand at 393.612 kb on - strand at 393.635 kb on - strand at 393.679 kb on - strand at 393.700 kb on + strand at 393.700 kb on + strand at 393.705 kb on - strand at 393.706 kb on - strand at 393.746 kb on + strand at 393.757 kb on + strand at 393.757 kb on + strand at 393.757 kb on + strand at 393.765 kb on - strand at 393.765 kb on - strand at 393.767 kb on + strand at 393.767 kb on + strand at 393.791 kb on + strand at 393.794 kb on - strand at 393.872 kb on + strand, within Synpcc7942_0399 at 393.882 kb on + strand, within Synpcc7942_0399 at 393.908 kb on - strand, within Synpcc7942_0399 at 393.915 kb on + strand, within Synpcc7942_0399
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 391,488 + +1.2 391,495 + +1.9 391,542 - +2.2 391,552 - +0.5 391,555 - +1.1 391,560 - +1.9 391,561 + +2.0 391,562 - +6.5 391,567 - -0.9 391,569 - +0.6 391,576 + +5.3 391,579 - +2.1 391,581 - +3.2 391,628 - +4.0 391,644 + +4.8 391,654 + +4.7 391,654 + +4.3 391,661 + +7.2 391,661 + +4.5 391,662 - +6.3 391,662 - +4.0 391,662 - +5.5 391,662 - +5.7 391,669 - +4.8 391,730 - lim17 Synpcc7942_0397 0.14 +4.7 391,757 + lim17 Synpcc7942_0397 0.16 +4.8 391,775 - lim17 Synpcc7942_0397 0.17 +4.6 391,787 + lim17 Synpcc7942_0397 0.18 +4.5 391,800 - lim17 Synpcc7942_0397 0.19 +6.3 391,802 + lim17 Synpcc7942_0397 0.19 +5.7 391,802 + lim17 Synpcc7942_0397 0.19 +8.8 391,802 + lim17 Synpcc7942_0397 0.19 +5.4 391,815 + lim17 Synpcc7942_0397 0.20 +4.3 391,836 + lim17 Synpcc7942_0397 0.22 +5.9 391,850 - lim17 Synpcc7942_0397 0.23 +6.5 391,888 + lim17 Synpcc7942_0397 0.26 +5.8 391,903 + lim17 Synpcc7942_0397 0.27 +5.6 391,910 - lim17 Synpcc7942_0397 0.27 +5.2 391,911 - lim17 Synpcc7942_0397 0.27 +5.1 391,915 - lim17 Synpcc7942_0397 0.28 +6.5 391,950 + lim17 Synpcc7942_0397 0.30 +6.1 391,967 + lim17 Synpcc7942_0397 0.31 +4.8 391,970 - lim17 Synpcc7942_0397 0.31 +6.0 391,972 + lim17 Synpcc7942_0397 0.32 +5.7 391,972 + lim17 Synpcc7942_0397 0.32 +3.8 391,988 - lim17 Synpcc7942_0397 0.33 +6.0 391,992 + lim17 Synpcc7942_0397 0.33 +4.4 391,999 - lim17 Synpcc7942_0397 0.34 +3.7 391,999 - lim17 Synpcc7942_0397 0.34 +6.4 391,999 - lim17 Synpcc7942_0397 0.34 +5.3 392,000 - lim17 Synpcc7942_0397 0.34 +2.4 392,002 + lim17 Synpcc7942_0397 0.34 +7.7 392,018 - lim17 Synpcc7942_0397 0.35 +4.8 392,045 + lim17 Synpcc7942_0397 0.37 +6.0 392,062 - lim17 Synpcc7942_0397 0.38 +5.0 392,068 + lim17 Synpcc7942_0397 0.39 +6.0 392,120 - lim17 Synpcc7942_0397 0.42 +4.4 392,128 + lim17 Synpcc7942_0397 0.43 +5.0 392,133 - lim17 Synpcc7942_0397 0.43 +5.8 392,143 + lim17 Synpcc7942_0397 0.44 +6.7 392,145 + lim17 Synpcc7942_0397 0.44 +4.3 392,145 + lim17 Synpcc7942_0397 0.44 +4.0 392,146 - lim17 Synpcc7942_0397 0.44 +4.6 392,146 - lim17 Synpcc7942_0397 0.44 +4.9 392,159 + lim17 Synpcc7942_0397 0.45 +4.9 392,161 + lim17 Synpcc7942_0397 0.45 +6.9 392,176 + lim17 Synpcc7942_0397 0.46 +4.0 392,176 + lim17 Synpcc7942_0397 0.46 +6.0 392,184 - lim17 Synpcc7942_0397 0.47 +3.6 392,186 + lim17 Synpcc7942_0397 0.47 +5.2 392,189 - lim17 Synpcc7942_0397 0.47 +5.0 392,192 + lim17 Synpcc7942_0397 0.47 +6.4 392,200 - lim17 Synpcc7942_0397 0.48 +5.8 392,207 - lim17 Synpcc7942_0397 0.48 +5.5 392,223 + lim17 Synpcc7942_0397 0.50 +3.8 392,240 - lim17 Synpcc7942_0397 0.51 +3.2 392,240 - lim17 Synpcc7942_0397 0.51 +6.1 392,305 + lim17 Synpcc7942_0397 0.56 +6.0 392,306 - lim17 Synpcc7942_0397 0.56 +7.2 392,306 - lim17 Synpcc7942_0397 0.56 +5.1 392,306 - lim17 Synpcc7942_0397 0.56 +6.6 392,313 + lim17 Synpcc7942_0397 0.56 +4.3 392,313 - lim17 Synpcc7942_0397 0.56 +4.0 392,314 - lim17 Synpcc7942_0397 0.56 +5.2 392,321 - lim17 Synpcc7942_0397 0.57 +4.5 392,366 + lim17 Synpcc7942_0397 0.60 +4.4 392,369 + lim17 Synpcc7942_0397 0.60 +5.5 392,386 + lim17 Synpcc7942_0397 0.61 +5.4 392,391 + lim17 Synpcc7942_0397 0.62 +6.5 392,423 - lim17 Synpcc7942_0397 0.64 +5.4 392,534 + lim17 Synpcc7942_0397 0.72 +6.3 392,536 + lim17 Synpcc7942_0397 0.72 +8.6 392,547 - lim17 Synpcc7942_0397 0.73 +4.8 392,602 + lim17 Synpcc7942_0397 0.77 +6.7 392,610 - lim17 Synpcc7942_0397 0.77 +5.2 392,610 - lim17 Synpcc7942_0397 0.77 +5.6 392,647 - lim17 Synpcc7942_0397 0.80 +5.5 392,663 + lim17 Synpcc7942_0397 0.81 +4.0 392,671 - lim17 Synpcc7942_0397 0.82 +2.4 392,671 - lim17 Synpcc7942_0397 0.82 +7.8 392,671 - lim17 Synpcc7942_0397 0.82 +5.8 392,736 + +4.5 392,736 + lim17 Synpcc7942_0397 0.86 +5.4 392,744 - lim17 Synpcc7942_0397 0.87 +6.7 392,746 + lim17 Synpcc7942_0397 0.87 +5.5 392,746 - lim17 Synpcc7942_0397 0.87 +4.0 392,755 + lim17 Synpcc7942_0397 0.88 +5.1 392,756 - lim17 Synpcc7942_0397 0.88 +6.2 392,766 - lim17 Synpcc7942_0397 0.89 +5.2 392,772 + lim17 Synpcc7942_0397 0.89 +5.7 392,777 + lim17 Synpcc7942_0397 0.89 +4.9 392,779 + lim17 Synpcc7942_0397 0.90 +4.9 392,780 - lim17 Synpcc7942_0397 0.90 +7.6 392,787 - +3.5 392,787 - +6.2 392,787 - +5.8 392,787 - +3.4 392,787 - +2.8 392,787 - +6.1 392,789 + +8.8 392,789 + +3.5 392,789 + +4.4 392,789 + +6.3 392,789 + +4.3 392,789 + +4.0 392,797 - +6.7 392,833 + +5.7 392,833 + +5.2 392,862 + +4.4 392,880 - +3.2 392,881 + -2.1 392,881 + -1.8 392,881 + +1.4 392,881 + +2.3 392,881 + +1.0 392,881 + -2.0 392,881 + -3.4 392,883 + +4.2 392,889 - -0.6 392,889 - +4.8 392,934 + -0.1 392,961 - +2.6 392,961 - -3.4 392,963 + +2.4 392,971 - -1.5 392,971 - +0.2 392,981 + -2.7 392,999 + -1.4 393,060 + Synpcc7942_0398 0.15 +3.0 393,171 + Synpcc7942_0398 0.39 +0.5 393,194 + Synpcc7942_0398 0.44 -0.9 393,194 + Synpcc7942_0398 0.44 -0.5 393,194 + Synpcc7942_0398 0.44 -1.4 393,194 + Synpcc7942_0398 0.44 +0.0 393,194 + Synpcc7942_0398 0.44 -1.8 393,194 + Synpcc7942_0398 0.44 +1.3 393,194 + Synpcc7942_0398 0.44 -2.5 393,196 + Synpcc7942_0398 0.45 -1.4 393,202 - Synpcc7942_0398 0.46 -1.5 393,202 - Synpcc7942_0398 0.46 -1.7 393,202 - Synpcc7942_0398 0.46 +1.3 393,202 - Synpcc7942_0398 0.46 +1.9 393,202 - Synpcc7942_0398 0.46 -2.8 393,202 - Synpcc7942_0398 0.46 +0.8 393,226 - Synpcc7942_0398 0.51 +0.5 393,280 - Synpcc7942_0398 0.63 -0.3 393,308 + +0.9 393,308 + Synpcc7942_0398 0.69 -2.2 393,308 + Synpcc7942_0398 0.69 -0.8 393,313 + Synpcc7942_0398 0.70 -0.5 393,313 + Synpcc7942_0398 0.70 -0.2 393,313 + Synpcc7942_0398 0.70 -1.1 393,362 + Synpcc7942_0398 0.81 -0.5 393,362 + Synpcc7942_0398 0.81 +0.9 393,362 + Synpcc7942_0398 0.81 -1.8 393,370 - Synpcc7942_0398 0.83 +6.7 393,370 - Synpcc7942_0398 0.83 +1.0 393,370 - Synpcc7942_0398 0.83 -0.5 393,380 + Synpcc7942_0398 0.85 -1.4 393,386 - Synpcc7942_0398 0.86 +0.2 393,410 + +0.0 393,425 - -1.3 393,446 - +3.0 393,465 + -2.7 393,492 - +2.4 393,492 - -2.0 393,492 - -0.2 393,492 - +0.6 393,502 - +3.2 393,541 - +1.5 393,591 + -1.0 393,591 + +0.5 393,591 + -1.7 393,591 + -3.5 393,591 + -1.4 393,592 + +2.3 393,592 + +1.3 393,592 + +1.5 393,603 + -2.0 393,604 + +0.5 393,604 + +0.6 393,606 - +1.5 393,611 - +0.5 393,612 - +0.6 393,635 - -0.8 393,679 - -1.5 393,700 + +0.9 393,700 + +0.6 393,705 - +1.5 393,706 - +1.4 393,746 + -1.1 393,757 + +2.4 393,757 + -3.6 393,757 + +0.2 393,765 - +0.0 393,765 - +2.2 393,767 + +0.2 393,767 + +2.3 393,791 + -1.8 393,794 - +0.3 393,872 + Synpcc7942_0399 0.10 -1.5 393,882 + Synpcc7942_0399 0.12 -2.8 393,908 - Synpcc7942_0399 0.15 -3.9 393,915 + Synpcc7942_0399 0.16 -3.1
Or see this region's nucleotide sequence