Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0360 and cp12 are separated by 232 nucleotides cp12 and Synpcc7942_0362 are separated by 124 nucleotides Synpcc7942_0362 and Synpcc7942_0363 are separated by 25 nucleotides Synpcc7942_0363 and Synpcc7942_0364 are separated by 71 nucleotides
Synpcc7942_0360: Synpcc7942_0360 - hypothetical protein, at 353,103 to 354,299
_0360
Synpcc7942_0361: cp12 - hypothetical protein, at 354,532 to 354,759
cp12
Synpcc7942_0362: Synpcc7942_0362 - hypothetical protein, at 354,884 to 355,483
_0362
Synpcc7942_0363: Synpcc7942_0363 - hypothetical protein, at 355,509 to 355,793
_0363
Synpcc7942_0364: Synpcc7942_0364 - hypothetical protein, at 355,865 to 356,416
_0364
Position (kb) 354
355
356 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 353.906 kb on - strand, within Synpcc7942_0360 at 353.926 kb on - strand, within Synpcc7942_0360 at 353.975 kb on + strand, within Synpcc7942_0360 at 353.995 kb on - strand, within Synpcc7942_0360 at 353.996 kb on - strand, within Synpcc7942_0360 at 353.996 kb on - strand, within Synpcc7942_0360 at 354.022 kb on + strand, within Synpcc7942_0360 at 354.030 kb on - strand, within Synpcc7942_0360 at 354.070 kb on - strand, within Synpcc7942_0360 at 354.077 kb on - strand, within Synpcc7942_0360 at 354.077 kb on - strand, within Synpcc7942_0360 at 354.079 kb on + strand, within Synpcc7942_0360 at 354.095 kb on + strand, within Synpcc7942_0360 at 354.095 kb on + strand, within Synpcc7942_0360 at 354.113 kb on + strand, within Synpcc7942_0360 at 354.153 kb on - strand, within Synpcc7942_0360 at 354.199 kb on + strand at 354.202 kb on - strand at 354.223 kb on + strand at 354.223 kb on + strand at 354.226 kb on - strand at 354.226 kb on - strand at 354.226 kb on - strand at 354.228 kb on + strand at 354.241 kb on + strand at 354.273 kb on + strand at 354.273 kb on + strand at 354.281 kb on - strand at 354.281 kb on - strand at 354.286 kb on + strand at 354.291 kb on - strand at 354.291 kb on - strand at 354.309 kb on - strand at 354.330 kb on + strand at 354.330 kb on + strand at 354.334 kb on - strand at 354.353 kb on + strand at 354.356 kb on + strand at 354.357 kb on - strand at 354.357 kb on - strand at 354.368 kb on + strand at 354.368 kb on + strand at 354.368 kb on + strand at 354.376 kb on - strand at 354.432 kb on + strand at 354.451 kb on + strand at 354.461 kb on + strand at 354.461 kb on + strand at 354.461 kb on + strand at 354.469 kb on - strand at 354.502 kb on - strand at 354.509 kb on + strand at 354.520 kb on - strand at 354.551 kb on + strand at 354.569 kb on - strand, within cp12 at 354.573 kb on + strand, within cp12 at 354.594 kb on - strand, within cp12 at 354.652 kb on + strand, within cp12 at 354.673 kb on + strand, within cp12 at 354.714 kb on - strand, within cp12 at 354.730 kb on + strand, within cp12 at 354.730 kb on + strand, within cp12 at 354.764 kb on - strand at 354.864 kb on + strand at 354.872 kb on - strand at 354.872 kb on - strand at 354.872 kb on - strand at 354.875 kb on - strand at 354.973 kb on + strand, within Synpcc7942_0362 at 354.993 kb on - strand, within Synpcc7942_0362 at 355.045 kb on + strand, within Synpcc7942_0362 at 355.379 kb on + strand, within Synpcc7942_0362 at 355.429 kb on - strand at 355.430 kb on - strand at 355.478 kb on + strand at 355.478 kb on + strand at 355.478 kb on + strand at 355.486 kb on - strand at 355.486 kb on - strand at 355.492 kb on - strand at 355.505 kb on + strand at 355.505 kb on + strand at 355.513 kb on - strand at 355.513 kb on - strand at 355.513 kb on - strand at 355.528 kb on + strand at 355.535 kb on + strand at 355.556 kb on + strand, within Synpcc7942_0363 at 355.564 kb on - strand, within Synpcc7942_0363 at 355.577 kb on + strand, within Synpcc7942_0363 at 355.592 kb on - strand, within Synpcc7942_0363 at 355.592 kb on - strand, within Synpcc7942_0363 at 355.597 kb on - strand, within Synpcc7942_0363 at 355.651 kb on + strand, within Synpcc7942_0363 at 355.657 kb on + strand, within Synpcc7942_0363 at 355.659 kb on - strand, within Synpcc7942_0363 at 355.704 kb on - strand, within Synpcc7942_0363 at 355.709 kb on - strand, within Synpcc7942_0363 at 355.719 kb on - strand, within Synpcc7942_0363 at 355.734 kb on - strand, within Synpcc7942_0363 at 355.762 kb on - strand, within Synpcc7942_0363 at 355.859 kb on - strand at 355.924 kb on - strand, within Synpcc7942_0364 at 355.942 kb on - strand, within Synpcc7942_0364 at 355.956 kb on + strand, within Synpcc7942_0364 at 355.962 kb on + strand, within Synpcc7942_0364 at 355.964 kb on - strand, within Synpcc7942_0364 at 355.970 kb on - strand, within Synpcc7942_0364 at 356.001 kb on + strand, within Synpcc7942_0364 at 356.022 kb on + strand, within Synpcc7942_0364 at 356.032 kb on - strand, within Synpcc7942_0364 at 356.049 kb on - strand, within Synpcc7942_0364 at 356.051 kb on - strand, within Synpcc7942_0364 at 356.085 kb on + strand at 356.085 kb on + strand, within Synpcc7942_0364 at 356.101 kb on + strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.126 kb on - strand, within Synpcc7942_0364 at 356.128 kb on - strand, within Synpcc7942_0364 at 356.138 kb on - strand, within Synpcc7942_0364 at 356.142 kb on - strand, within Synpcc7942_0364 at 356.203 kb on - strand, within Synpcc7942_0364 at 356.205 kb on - strand, within Synpcc7942_0364 at 356.209 kb on - strand, within Synpcc7942_0364 at 356.213 kb on + strand, within Synpcc7942_0364 at 356.229 kb on + strand, within Synpcc7942_0364 at 356.229 kb on + strand, within Synpcc7942_0364 at 356.230 kb on + strand, within Synpcc7942_0364 at 356.237 kb on - strand, within Synpcc7942_0364 at 356.237 kb on - strand, within Synpcc7942_0364 at 356.245 kb on + strand, within Synpcc7942_0364 at 356.274 kb on - strand, within Synpcc7942_0364 at 356.281 kb on - strand, within Synpcc7942_0364 at 356.285 kb on + strand, within Synpcc7942_0364 at 356.287 kb on + strand, within Synpcc7942_0364 at 356.291 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.335 kb on + strand, within Synpcc7942_0364 at 356.340 kb on - strand, within Synpcc7942_0364 at 356.340 kb on - strand, within Synpcc7942_0364 at 356.402 kb on - strand at 356.411 kb on + strand at 356.419 kb on - strand at 356.459 kb on - strand at 356.459 kb on - strand at 356.482 kb on - strand at 356.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 353,906 - Synpcc7942_0360 0.67 -4.8 353,926 - Synpcc7942_0360 0.69 -3.0 353,975 + Synpcc7942_0360 0.73 -3.7 353,995 - Synpcc7942_0360 0.75 -2.3 353,996 - Synpcc7942_0360 0.75 -2.2 353,996 - Synpcc7942_0360 0.75 -2.0 354,022 + Synpcc7942_0360 0.77 -1.3 354,030 - Synpcc7942_0360 0.77 -3.1 354,070 - Synpcc7942_0360 0.81 -4.1 354,077 - Synpcc7942_0360 0.81 -3.9 354,077 - Synpcc7942_0360 0.81 -3.9 354,079 + Synpcc7942_0360 0.82 -4.7 354,095 + Synpcc7942_0360 0.83 -1.9 354,095 + Synpcc7942_0360 0.83 -3.2 354,113 + Synpcc7942_0360 0.84 -4.0 354,153 - Synpcc7942_0360 0.88 -2.1 354,199 + -2.4 354,202 - -0.2 354,223 + -0.5 354,223 + -2.9 354,226 - -2.2 354,226 - -4.5 354,226 - -2.6 354,228 + -0.3 354,241 + -3.3 354,273 + -3.5 354,273 + -2.5 354,281 - -1.3 354,281 - -1.9 354,286 + -3.1 354,291 - -2.5 354,291 - -0.8 354,309 - -2.3 354,330 + -4.3 354,330 + -0.7 354,334 - -1.7 354,353 + -0.8 354,356 + -3.4 354,357 - -0.9 354,357 - -2.9 354,368 + -3.0 354,368 + +1.3 354,368 + -4.0 354,376 - -2.3 354,432 + +0.5 354,451 + -4.1 354,461 + -4.2 354,461 + -2.1 354,461 + -0.9 354,469 - -2.1 354,502 - -3.2 354,509 + -2.1 354,520 - -2.0 354,551 + -1.2 354,569 - cp12 Synpcc7942_0361 0.16 -2.8 354,573 + cp12 Synpcc7942_0361 0.18 -2.7 354,594 - cp12 Synpcc7942_0361 0.27 -4.3 354,652 + cp12 Synpcc7942_0361 0.53 -2.2 354,673 + cp12 Synpcc7942_0361 0.62 -2.2 354,714 - cp12 Synpcc7942_0361 0.80 -1.3 354,730 + cp12 Synpcc7942_0361 0.87 -1.3 354,730 + cp12 Synpcc7942_0361 0.87 -0.7 354,764 - -1.9 354,864 + -2.2 354,872 - -3.7 354,872 - -2.5 354,872 - -2.5 354,875 - -0.7 354,973 + Synpcc7942_0362 0.15 -1.9 354,993 - Synpcc7942_0362 0.18 -1.5 355,045 + Synpcc7942_0362 0.27 -4.0 355,379 + Synpcc7942_0362 0.82 -2.4 355,429 - -2.2 355,430 - -1.5 355,478 + -0.5 355,478 + -0.7 355,478 + -1.8 355,486 - -1.2 355,486 - -0.5 355,492 - +0.0 355,505 + +1.4 355,505 + -1.8 355,513 - +1.4 355,513 - +1.1 355,513 - -1.9 355,528 + -3.4 355,535 + +0.5 355,556 + Synpcc7942_0363 0.16 +0.2 355,564 - Synpcc7942_0363 0.19 +0.3 355,577 + Synpcc7942_0363 0.24 -1.8 355,592 - Synpcc7942_0363 0.29 +0.1 355,592 - Synpcc7942_0363 0.29 -0.5 355,597 - Synpcc7942_0363 0.31 +1.7 355,651 + Synpcc7942_0363 0.50 +2.3 355,657 + Synpcc7942_0363 0.52 +0.5 355,659 - Synpcc7942_0363 0.53 -1.4 355,704 - Synpcc7942_0363 0.68 -1.4 355,709 - Synpcc7942_0363 0.70 -1.5 355,719 - Synpcc7942_0363 0.74 -2.3 355,734 - Synpcc7942_0363 0.79 +2.5 355,762 - Synpcc7942_0363 0.89 -1.8 355,859 - -0.3 355,924 - Synpcc7942_0364 0.11 +0.7 355,942 - Synpcc7942_0364 0.14 -2.2 355,956 + Synpcc7942_0364 0.16 +0.6 355,962 + Synpcc7942_0364 0.18 -1.2 355,964 - Synpcc7942_0364 0.18 -0.2 355,970 - Synpcc7942_0364 0.19 +1.2 356,001 + Synpcc7942_0364 0.25 +1.0 356,022 + Synpcc7942_0364 0.28 +1.3 356,032 - Synpcc7942_0364 0.30 -1.6 356,049 - Synpcc7942_0364 0.33 -1.6 356,051 - Synpcc7942_0364 0.34 -1.2 356,085 + +1.5 356,085 + Synpcc7942_0364 0.40 +1.0 356,101 + Synpcc7942_0364 0.43 -0.5 356,104 - Synpcc7942_0364 0.43 -0.7 356,104 - Synpcc7942_0364 0.43 -1.3 356,104 - Synpcc7942_0364 0.43 -2.0 356,126 - Synpcc7942_0364 0.47 -1.8 356,128 - Synpcc7942_0364 0.48 +1.1 356,138 - Synpcc7942_0364 0.49 -1.2 356,142 - Synpcc7942_0364 0.50 -1.7 356,203 - Synpcc7942_0364 0.61 +1.5 356,205 - Synpcc7942_0364 0.62 -0.0 356,209 - Synpcc7942_0364 0.62 +0.1 356,213 + Synpcc7942_0364 0.63 +2.1 356,229 + Synpcc7942_0364 0.66 -1.2 356,229 + Synpcc7942_0364 0.66 -0.0 356,230 + Synpcc7942_0364 0.66 +3.3 356,237 - Synpcc7942_0364 0.67 +2.0 356,237 - Synpcc7942_0364 0.67 +2.7 356,245 + Synpcc7942_0364 0.69 -2.0 356,274 - Synpcc7942_0364 0.74 +3.6 356,281 - Synpcc7942_0364 0.75 -1.2 356,285 + Synpcc7942_0364 0.76 +0.0 356,287 + Synpcc7942_0364 0.76 +3.5 356,291 - Synpcc7942_0364 0.77 -1.7 356,293 - Synpcc7942_0364 0.78 -2.0 356,293 - Synpcc7942_0364 0.78 +3.0 356,293 - Synpcc7942_0364 0.78 -3.5 356,332 + Synpcc7942_0364 0.85 -3.3 356,332 + Synpcc7942_0364 0.85 +3.6 356,332 + Synpcc7942_0364 0.85 +1.0 356,332 + Synpcc7942_0364 0.85 +1.5 356,335 + Synpcc7942_0364 0.85 -2.5 356,340 - Synpcc7942_0364 0.86 -2.9 356,340 - Synpcc7942_0364 0.86 -0.8 356,402 - -0.8 356,411 + -2.5 356,419 - +0.1 356,459 - +2.5 356,459 - +2.9 356,482 - +1.1 356,482 - +2.4
Or see this region's nucleotide sequence