Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0360 and cp12 are separated by 232 nucleotides cp12 and Synpcc7942_0362 are separated by 124 nucleotides Synpcc7942_0362 and Synpcc7942_0363 are separated by 25 nucleotides
Synpcc7942_0360: Synpcc7942_0360 - hypothetical protein, at 353,103 to 354,299
_0360
Synpcc7942_0361: cp12 - hypothetical protein, at 354,532 to 354,759
cp12
Synpcc7942_0362: Synpcc7942_0362 - hypothetical protein, at 354,884 to 355,483
_0362
Synpcc7942_0363: Synpcc7942_0363 - hypothetical protein, at 355,509 to 355,793
_0363
Position (kb) 354
355 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 353.541 kb on + strand, within Synpcc7942_0360 at 353.545 kb on + strand, within Synpcc7942_0360 at 353.549 kb on - strand, within Synpcc7942_0360 at 353.562 kb on + strand, within Synpcc7942_0360 at 353.562 kb on + strand, within Synpcc7942_0360 at 353.567 kb on + strand, within Synpcc7942_0360 at 353.567 kb on + strand, within Synpcc7942_0360 at 353.570 kb on - strand, within Synpcc7942_0360 at 353.574 kb on + strand, within Synpcc7942_0360 at 353.575 kb on - strand, within Synpcc7942_0360 at 353.575 kb on - strand, within Synpcc7942_0360 at 353.581 kb on - strand, within Synpcc7942_0360 at 353.581 kb on - strand, within Synpcc7942_0360 at 353.588 kb on - strand, within Synpcc7942_0360 at 353.613 kb on + strand, within Synpcc7942_0360 at 353.677 kb on + strand, within Synpcc7942_0360 at 353.682 kb on + strand at 353.703 kb on + strand, within Synpcc7942_0360 at 353.711 kb on + strand, within Synpcc7942_0360 at 353.721 kb on - strand, within Synpcc7942_0360 at 353.723 kb on + strand, within Synpcc7942_0360 at 353.736 kb on - strand, within Synpcc7942_0360 at 353.748 kb on - strand, within Synpcc7942_0360 at 353.802 kb on + strand, within Synpcc7942_0360 at 353.834 kb on - strand, within Synpcc7942_0360 at 353.848 kb on + strand, within Synpcc7942_0360 at 353.848 kb on + strand, within Synpcc7942_0360 at 353.860 kb on + strand, within Synpcc7942_0360 at 353.860 kb on + strand, within Synpcc7942_0360 at 353.906 kb on - strand, within Synpcc7942_0360 at 353.926 kb on - strand, within Synpcc7942_0360 at 353.975 kb on + strand, within Synpcc7942_0360 at 353.995 kb on - strand, within Synpcc7942_0360 at 353.996 kb on - strand, within Synpcc7942_0360 at 353.996 kb on - strand, within Synpcc7942_0360 at 354.022 kb on + strand, within Synpcc7942_0360 at 354.030 kb on - strand, within Synpcc7942_0360 at 354.070 kb on - strand, within Synpcc7942_0360 at 354.077 kb on - strand, within Synpcc7942_0360 at 354.077 kb on - strand, within Synpcc7942_0360 at 354.079 kb on + strand, within Synpcc7942_0360 at 354.095 kb on + strand, within Synpcc7942_0360 at 354.095 kb on + strand, within Synpcc7942_0360 at 354.113 kb on + strand, within Synpcc7942_0360 at 354.153 kb on - strand, within Synpcc7942_0360 at 354.199 kb on + strand at 354.202 kb on - strand at 354.223 kb on + strand at 354.223 kb on + strand at 354.226 kb on - strand at 354.226 kb on - strand at 354.226 kb on - strand at 354.228 kb on + strand at 354.241 kb on + strand at 354.273 kb on + strand at 354.273 kb on + strand at 354.281 kb on - strand at 354.281 kb on - strand at 354.286 kb on + strand at 354.291 kb on - strand at 354.291 kb on - strand at 354.309 kb on - strand at 354.330 kb on + strand at 354.330 kb on + strand at 354.334 kb on - strand at 354.353 kb on + strand at 354.356 kb on + strand at 354.357 kb on - strand at 354.357 kb on - strand at 354.368 kb on + strand at 354.368 kb on + strand at 354.368 kb on + strand at 354.376 kb on - strand at 354.432 kb on + strand at 354.451 kb on + strand at 354.461 kb on + strand at 354.461 kb on + strand at 354.461 kb on + strand at 354.469 kb on - strand at 354.502 kb on - strand at 354.509 kb on + strand at 354.520 kb on - strand at 354.551 kb on + strand at 354.569 kb on - strand, within cp12 at 354.573 kb on + strand, within cp12 at 354.594 kb on - strand, within cp12 at 354.652 kb on + strand, within cp12 at 354.673 kb on + strand, within cp12 at 354.714 kb on - strand, within cp12 at 354.730 kb on + strand, within cp12 at 354.730 kb on + strand, within cp12 at 354.764 kb on - strand at 354.864 kb on + strand at 354.872 kb on - strand at 354.872 kb on - strand at 354.872 kb on - strand at 354.875 kb on - strand at 354.973 kb on + strand, within Synpcc7942_0362 at 354.993 kb on - strand, within Synpcc7942_0362 at 355.045 kb on + strand, within Synpcc7942_0362 at 355.379 kb on + strand, within Synpcc7942_0362 at 355.429 kb on - strand at 355.430 kb on - strand at 355.478 kb on + strand at 355.478 kb on + strand at 355.478 kb on + strand at 355.486 kb on - strand at 355.486 kb on - strand at 355.492 kb on - strand at 355.505 kb on + strand at 355.505 kb on + strand at 355.513 kb on - strand at 355.513 kb on - strand at 355.513 kb on - strand at 355.528 kb on + strand at 355.535 kb on + strand at 355.556 kb on + strand, within Synpcc7942_0363 at 355.564 kb on - strand, within Synpcc7942_0363 at 355.577 kb on + strand, within Synpcc7942_0363 at 355.592 kb on - strand, within Synpcc7942_0363 at 355.592 kb on - strand, within Synpcc7942_0363 at 355.597 kb on - strand, within Synpcc7942_0363 at 355.651 kb on + strand, within Synpcc7942_0363 at 355.657 kb on + strand, within Synpcc7942_0363 at 355.659 kb on - strand, within Synpcc7942_0363 at 355.704 kb on - strand, within Synpcc7942_0363 at 355.709 kb on - strand, within Synpcc7942_0363 at 355.719 kb on - strand, within Synpcc7942_0363 at 355.734 kb on - strand, within Synpcc7942_0363
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 353,541 + Synpcc7942_0360 0.37 -2.0 353,545 + Synpcc7942_0360 0.37 -5.0 353,549 - Synpcc7942_0360 0.37 -3.0 353,562 + Synpcc7942_0360 0.38 -3.4 353,562 + Synpcc7942_0360 0.38 -2.1 353,567 + Synpcc7942_0360 0.39 -1.7 353,567 + Synpcc7942_0360 0.39 -4.5 353,570 - Synpcc7942_0360 0.39 -2.1 353,574 + Synpcc7942_0360 0.39 -4.0 353,575 - Synpcc7942_0360 0.39 -3.0 353,575 - Synpcc7942_0360 0.39 -1.6 353,581 - Synpcc7942_0360 0.40 -4.7 353,581 - Synpcc7942_0360 0.40 -4.3 353,588 - Synpcc7942_0360 0.41 -1.3 353,613 + Synpcc7942_0360 0.43 -4.5 353,677 + Synpcc7942_0360 0.48 -3.9 353,682 + +6.3 353,703 + Synpcc7942_0360 0.50 +0.1 353,711 + Synpcc7942_0360 0.51 -1.1 353,721 - Synpcc7942_0360 0.52 -4.7 353,723 + Synpcc7942_0360 0.52 -3.6 353,736 - Synpcc7942_0360 0.53 -2.3 353,748 - Synpcc7942_0360 0.54 -4.5 353,802 + Synpcc7942_0360 0.58 -4.8 353,834 - Synpcc7942_0360 0.61 -2.7 353,848 + Synpcc7942_0360 0.62 -3.1 353,848 + Synpcc7942_0360 0.62 -3.7 353,860 + Synpcc7942_0360 0.63 -3.2 353,860 + Synpcc7942_0360 0.63 -3.1 353,906 - Synpcc7942_0360 0.67 -4.8 353,926 - Synpcc7942_0360 0.69 -3.0 353,975 + Synpcc7942_0360 0.73 -3.7 353,995 - Synpcc7942_0360 0.75 -2.3 353,996 - Synpcc7942_0360 0.75 -2.2 353,996 - Synpcc7942_0360 0.75 -2.0 354,022 + Synpcc7942_0360 0.77 -1.3 354,030 - Synpcc7942_0360 0.77 -3.1 354,070 - Synpcc7942_0360 0.81 -4.1 354,077 - Synpcc7942_0360 0.81 -3.9 354,077 - Synpcc7942_0360 0.81 -3.9 354,079 + Synpcc7942_0360 0.82 -4.7 354,095 + Synpcc7942_0360 0.83 -1.9 354,095 + Synpcc7942_0360 0.83 -3.2 354,113 + Synpcc7942_0360 0.84 -4.0 354,153 - Synpcc7942_0360 0.88 -2.1 354,199 + -2.4 354,202 - -0.2 354,223 + -0.5 354,223 + -2.9 354,226 - -2.2 354,226 - -4.5 354,226 - -2.6 354,228 + -0.3 354,241 + -3.3 354,273 + -3.5 354,273 + -2.5 354,281 - -1.3 354,281 - -1.9 354,286 + -3.1 354,291 - -2.5 354,291 - -0.8 354,309 - -2.3 354,330 + -4.3 354,330 + -0.7 354,334 - -1.7 354,353 + -0.8 354,356 + -3.4 354,357 - -0.9 354,357 - -2.9 354,368 + -3.0 354,368 + +1.3 354,368 + -4.0 354,376 - -2.3 354,432 + +0.5 354,451 + -4.1 354,461 + -4.2 354,461 + -2.1 354,461 + -0.9 354,469 - -2.1 354,502 - -3.2 354,509 + -2.1 354,520 - -2.0 354,551 + -1.2 354,569 - cp12 Synpcc7942_0361 0.16 -2.8 354,573 + cp12 Synpcc7942_0361 0.18 -2.7 354,594 - cp12 Synpcc7942_0361 0.27 -4.3 354,652 + cp12 Synpcc7942_0361 0.53 -2.2 354,673 + cp12 Synpcc7942_0361 0.62 -2.2 354,714 - cp12 Synpcc7942_0361 0.80 -1.3 354,730 + cp12 Synpcc7942_0361 0.87 -1.3 354,730 + cp12 Synpcc7942_0361 0.87 -0.7 354,764 - -1.9 354,864 + -2.2 354,872 - -3.7 354,872 - -2.5 354,872 - -2.5 354,875 - -0.7 354,973 + Synpcc7942_0362 0.15 -1.9 354,993 - Synpcc7942_0362 0.18 -1.5 355,045 + Synpcc7942_0362 0.27 -4.0 355,379 + Synpcc7942_0362 0.82 -2.4 355,429 - -2.2 355,430 - -1.5 355,478 + -0.5 355,478 + -0.7 355,478 + -1.8 355,486 - -1.2 355,486 - -0.5 355,492 - +0.0 355,505 + +1.4 355,505 + -1.8 355,513 - +1.4 355,513 - +1.1 355,513 - -1.9 355,528 + -3.4 355,535 + +0.5 355,556 + Synpcc7942_0363 0.16 +0.2 355,564 - Synpcc7942_0363 0.19 +0.3 355,577 + Synpcc7942_0363 0.24 -1.8 355,592 - Synpcc7942_0363 0.29 +0.1 355,592 - Synpcc7942_0363 0.29 -0.5 355,597 - Synpcc7942_0363 0.31 +1.7 355,651 + Synpcc7942_0363 0.50 +2.3 355,657 + Synpcc7942_0363 0.52 +0.5 355,659 - Synpcc7942_0363 0.53 -1.4 355,704 - Synpcc7942_0363 0.68 -1.4 355,709 - Synpcc7942_0363 0.70 -1.5 355,719 - Synpcc7942_0363 0.74 -2.3 355,734 - Synpcc7942_0363 0.79 +2.5
Or see this region's nucleotide sequence