Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0359

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntictB and dc13 are separated by 30 nucleotidesdc13 and Synpcc7942_0359 are separated by 75 nucleotidesSynpcc7942_0359 and Synpcc7942_0360 overlap by 105 nucleotides Synpcc7942_0357: ictB - Inorganic carbon transporter, at 349,875 to 351,278 ictB Synpcc7942_0358: dc13 - tRNA (guanine-N(7))-methyltransferase, at 351,309 to 351,950 dc13 Synpcc7942_0359: Synpcc7942_0359 - hypothetical protein, at 352,026 to 353,207 _0359 Synpcc7942_0360: Synpcc7942_0360 - hypothetical protein, at 353,103 to 354,299 _0360 Position (kb) 352 353 354Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 351.282 kb on - strandat 351.287 kb on + strandat 351.299 kb on + strandat 351.300 kb on + strandat 351.305 kb on - strandat 351.307 kb on + strandat 351.331 kb on - strandat 351.340 kb on + strandat 351.343 kb on - strandat 351.456 kb on + strand, within dc13at 351.505 kb on - strand, within dc13at 351.506 kb on + strand, within dc13at 351.514 kb on - strand, within dc13at 351.529 kb on + strand, within dc13at 351.613 kb on - strand, within dc13at 351.618 kb on - strand, within dc13at 351.618 kb on - strand, within dc13at 351.678 kb on + strand, within dc13at 351.704 kb on + strand, within dc13at 351.704 kb on + strand, within dc13at 351.710 kb on - strandat 351.788 kb on - strand, within dc13at 351.788 kb on - strand, within dc13at 351.789 kb on - strandat 351.867 kb on - strand, within dc13at 351.867 kb on - strand, within dc13at 351.867 kb on - strand, within dc13at 351.869 kb on + strand, within dc13at 351.874 kb on - strand, within dc13at 351.893 kb on - strandat 351.894 kb on - strandat 351.927 kb on - strandat 351.935 kb on + strandat 351.960 kb on + strandat 351.981 kb on + strandat 351.983 kb on - strandat 351.986 kb on + strandat 351.989 kb on - strandat 351.999 kb on - strandat 352.011 kb on + strandat 352.019 kb on - strandat 352.031 kb on - strandat 352.052 kb on + strandat 352.052 kb on + strandat 352.052 kb on + strandat 352.060 kb on - strandat 352.060 kb on - strandat 352.074 kb on - strandat 352.126 kb on + strandat 352.145 kb on + strand, within Synpcc7942_0359at 352.145 kb on + strand, within Synpcc7942_0359at 352.149 kb on - strand, within Synpcc7942_0359at 352.180 kb on + strand, within Synpcc7942_0359at 352.197 kb on + strand, within Synpcc7942_0359at 352.206 kb on - strand, within Synpcc7942_0359at 352.259 kb on + strand, within Synpcc7942_0359at 352.267 kb on - strand, within Synpcc7942_0359at 352.268 kb on + strand, within Synpcc7942_0359at 352.268 kb on + strand, within Synpcc7942_0359at 352.273 kb on + strand, within Synpcc7942_0359at 352.276 kb on - strand, within Synpcc7942_0359at 352.277 kb on - strand, within Synpcc7942_0359at 352.281 kb on - strand, within Synpcc7942_0359at 352.281 kb on - strand, within Synpcc7942_0359at 352.324 kb on + strand, within Synpcc7942_0359at 352.339 kb on + strand, within Synpcc7942_0359at 352.394 kb on - strand, within Synpcc7942_0359at 352.402 kb on - strand, within Synpcc7942_0359at 352.413 kb on + strand, within Synpcc7942_0359at 352.533 kb on + strand, within Synpcc7942_0359at 352.533 kb on + strand, within Synpcc7942_0359at 352.541 kb on - strand, within Synpcc7942_0359at 352.541 kb on - strand, within Synpcc7942_0359at 352.546 kb on - strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.571 kb on - strand, within Synpcc7942_0359at 352.571 kb on - strand, within Synpcc7942_0359at 352.590 kb on - strand, within Synpcc7942_0359at 352.607 kb on + strand, within Synpcc7942_0359at 352.607 kb on + strand, within Synpcc7942_0359at 352.664 kb on - strand, within Synpcc7942_0359at 352.665 kb on + strand, within Synpcc7942_0359at 352.670 kb on + strand, within Synpcc7942_0359at 352.683 kb on - strand, within Synpcc7942_0359at 352.692 kb on + strand, within Synpcc7942_0359at 352.723 kb on + strand, within Synpcc7942_0359at 352.728 kb on - strand, within Synpcc7942_0359at 352.736 kb on - strand, within Synpcc7942_0359at 352.753 kb on + strand, within Synpcc7942_0359at 352.754 kb on + strand, within Synpcc7942_0359at 352.769 kb on + strand, within Synpcc7942_0359at 352.769 kb on + strand, within Synpcc7942_0359at 352.777 kb on - strand, within Synpcc7942_0359at 352.785 kb on - strand, within Synpcc7942_0359at 352.786 kb on - strand, within Synpcc7942_0359at 352.874 kb on + strand, within Synpcc7942_0359at 352.895 kb on + strand, within Synpcc7942_0359at 352.898 kb on - strand, within Synpcc7942_0359at 352.992 kb on - strand, within Synpcc7942_0359at 353.010 kb on - strand, within Synpcc7942_0359at 353.010 kb on - strand, within Synpcc7942_0359at 353.016 kb on + strand, within Synpcc7942_0359at 353.034 kb on + strand, within Synpcc7942_0359at 353.042 kb on - strand, within Synpcc7942_0359at 353.057 kb on + strand, within Synpcc7942_0359at 353.068 kb on - strand, within Synpcc7942_0359at 353.081 kb on - strand, within Synpcc7942_0359at 353.103 kb on - strandat 353.132 kb on + strandat 353.140 kb on + strandat 353.140 kb on - strandat 353.148 kb on - strandat 353.153 kb on + strandat 353.178 kb on + strandat 353.203 kb on + strandat 353.203 kb on + strandat 353.211 kb on - strandat 353.221 kb on - strandat 353.221 kb on - strandat 353.229 kb on - strand, within Synpcc7942_0360at 353.256 kb on - strand, within Synpcc7942_0360at 353.266 kb on - strand, within Synpcc7942_0360at 353.270 kb on - strand, within Synpcc7942_0360at 353.287 kb on - strand, within Synpcc7942_0360at 353.311 kb on + strand, within Synpcc7942_0360at 353.317 kb on + strand, within Synpcc7942_0360at 353.325 kb on - strand, within Synpcc7942_0360at 353.370 kb on + strand, within Synpcc7942_0360at 353.380 kb on + strand, within Synpcc7942_0360at 353.396 kb on - strandat 353.405 kb on + strand, within Synpcc7942_0360at 353.405 kb on + strand, within Synpcc7942_0360at 353.410 kb on + strand, within Synpcc7942_0360at 353.450 kb on + strand, within Synpcc7942_0360at 353.450 kb on + strand, within Synpcc7942_0360at 353.458 kb on - strand, within Synpcc7942_0360at 353.463 kb on - strand, within Synpcc7942_0360at 353.465 kb on - strand, within Synpcc7942_0360at 353.473 kb on - strand, within Synpcc7942_0360at 353.473 kb on - strand, within Synpcc7942_0360at 353.489 kb on + strand, within Synpcc7942_0360at 353.489 kb on + strand, within Synpcc7942_0360at 353.498 kb on - strand, within Synpcc7942_0360at 353.522 kb on + strand, within Synpcc7942_0360at 353.522 kb on + strand, within Synpcc7942_0360at 353.522 kb on + strand, within Synpcc7942_0360at 353.522 kb on + strand, within Synpcc7942_0360at 353.530 kb on - strand, within Synpcc7942_0360at 353.530 kb on - strand, within Synpcc7942_0360at 353.541 kb on + strand, within Synpcc7942_0360at 353.545 kb on + strand, within Synpcc7942_0360at 353.549 kb on - strand, within Synpcc7942_0360at 353.562 kb on + strand, within Synpcc7942_0360at 353.562 kb on + strand, within Synpcc7942_0360at 353.567 kb on + strand, within Synpcc7942_0360at 353.567 kb on + strand, within Synpcc7942_0360at 353.570 kb on - strand, within Synpcc7942_0360at 353.574 kb on + strand, within Synpcc7942_0360at 353.575 kb on - strand, within Synpcc7942_0360at 353.575 kb on - strand, within Synpcc7942_0360at 353.581 kb on - strand, within Synpcc7942_0360at 353.581 kb on - strand, within Synpcc7942_0360at 353.588 kb on - strand, within Synpcc7942_0360at 353.613 kb on + strand, within Synpcc7942_0360at 353.677 kb on + strand, within Synpcc7942_0360at 353.682 kb on + strandat 353.703 kb on + strand, within Synpcc7942_0360at 353.711 kb on + strand, within Synpcc7942_0360at 353.721 kb on - strand, within Synpcc7942_0360at 353.723 kb on + strand, within Synpcc7942_0360at 353.736 kb on - strand, within Synpcc7942_0360at 353.748 kb on - strand, within Synpcc7942_0360at 353.802 kb on + strand, within Synpcc7942_0360at 353.834 kb on - strand, within Synpcc7942_0360at 353.848 kb on + strand, within Synpcc7942_0360at 353.848 kb on + strand, within Synpcc7942_0360at 353.860 kb on + strand, within Synpcc7942_0360at 353.860 kb on + strand, within Synpcc7942_0360at 353.906 kb on - strand, within Synpcc7942_0360at 353.926 kb on - strand, within Synpcc7942_0360at 353.975 kb on + strand, within Synpcc7942_0360at 353.995 kb on - strand, within Synpcc7942_0360at 353.996 kb on - strand, within Synpcc7942_0360at 353.996 kb on - strand, within Synpcc7942_0360at 354.022 kb on + strand, within Synpcc7942_0360at 354.030 kb on - strand, within Synpcc7942_0360at 354.070 kb on - strand, within Synpcc7942_0360at 354.077 kb on - strand, within Synpcc7942_0360at 354.077 kb on - strand, within Synpcc7942_0360at 354.079 kb on + strand, within Synpcc7942_0360at 354.095 kb on + strand, within Synpcc7942_0360at 354.095 kb on + strand, within Synpcc7942_0360at 354.113 kb on + strand, within Synpcc7942_0360at 354.153 kb on - strand, within Synpcc7942_0360at 354.199 kb on + strandat 354.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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351,282 - -2.2
351,287 + -1.3
351,299 + -1.0
351,300 + -2.2
351,305 - -2.3
351,307 + +1.1
351,331 - -1.3
351,340 + -0.9
351,343 - +0.6
351,456 + dc13 Synpcc7942_0358 0.23 +3.0
351,505 - dc13 Synpcc7942_0358 0.31 -2.0
351,506 + dc13 Synpcc7942_0358 0.31 -2.4
351,514 - dc13 Synpcc7942_0358 0.32 +1.5
351,529 + dc13 Synpcc7942_0358 0.34 +1.8
351,613 - dc13 Synpcc7942_0358 0.47 +2.7
351,618 - dc13 Synpcc7942_0358 0.48 +2.8
351,618 - dc13 Synpcc7942_0358 0.48 +2.0
351,678 + dc13 Synpcc7942_0358 0.57 +4.9
351,704 + dc13 Synpcc7942_0358 0.62 +3.2
351,704 + dc13 Synpcc7942_0358 0.62 +1.7
351,710 - -0.1
351,788 - dc13 Synpcc7942_0358 0.75 +2.4
351,788 - dc13 Synpcc7942_0358 0.75 -1.5
351,789 - +0.8
351,867 - dc13 Synpcc7942_0358 0.87 +5.6
351,867 - dc13 Synpcc7942_0358 0.87 -0.7
351,867 - dc13 Synpcc7942_0358 0.87 -0.5
351,869 + dc13 Synpcc7942_0358 0.87 +1.0
351,874 - dc13 Synpcc7942_0358 0.88 +2.8
351,893 - +3.6
351,894 - +3.3
351,927 - +3.8
351,935 + +2.0
351,960 + -1.5
351,981 + +0.8
351,983 - -2.5
351,986 + +0.3
351,989 - +1.8
351,999 - -1.2
352,011 + +1.1
352,019 - +0.9
352,031 - +1.6
352,052 + -2.9
352,052 + -0.9
352,052 + -1.2
352,060 - -2.9
352,060 - +0.1
352,074 - +0.2
352,126 + +2.4
352,145 + Synpcc7942_0359 0.10 +0.5
352,145 + Synpcc7942_0359 0.10 -0.9
352,149 - Synpcc7942_0359 0.10 -0.9
352,180 + Synpcc7942_0359 0.13 +0.1
352,197 + Synpcc7942_0359 0.14 -0.7
352,206 - Synpcc7942_0359 0.15 +2.7
352,259 + Synpcc7942_0359 0.20 -1.5
352,267 - Synpcc7942_0359 0.20 +1.3
352,268 + Synpcc7942_0359 0.20 -0.0
352,268 + Synpcc7942_0359 0.20 -1.3
352,273 + Synpcc7942_0359 0.21 +1.1
352,276 - Synpcc7942_0359 0.21 -1.3
352,277 - Synpcc7942_0359 0.21 +3.1
352,281 - Synpcc7942_0359 0.22 -4.1
352,281 - Synpcc7942_0359 0.22 +2.3
352,324 + Synpcc7942_0359 0.25 -0.7
352,339 + Synpcc7942_0359 0.26 -1.3
352,394 - Synpcc7942_0359 0.31 +2.6
352,402 - Synpcc7942_0359 0.32 -0.5
352,413 + Synpcc7942_0359 0.33 -0.8
352,533 + Synpcc7942_0359 0.43 +1.4
352,533 + Synpcc7942_0359 0.43 +0.7
352,541 - Synpcc7942_0359 0.44 -2.6
352,541 - Synpcc7942_0359 0.44 +0.9
352,546 - Synpcc7942_0359 0.44 -0.3
352,563 + Synpcc7942_0359 0.45 -1.5
352,563 + Synpcc7942_0359 0.45 -2.0
352,563 + Synpcc7942_0359 0.45 +3.6
352,571 - Synpcc7942_0359 0.46 +0.3
352,571 - Synpcc7942_0359 0.46 +1.6
352,590 - Synpcc7942_0359 0.48 -2.0
352,607 + Synpcc7942_0359 0.49 +2.7
352,607 + Synpcc7942_0359 0.49 +0.1
352,664 - Synpcc7942_0359 0.54 -0.3
352,665 + Synpcc7942_0359 0.54 +1.8
352,670 + Synpcc7942_0359 0.54 +0.3
352,683 - Synpcc7942_0359 0.56 +0.8
352,692 + Synpcc7942_0359 0.56 -0.7
352,723 + Synpcc7942_0359 0.59 -0.8
352,728 - Synpcc7942_0359 0.59 -0.5
352,736 - Synpcc7942_0359 0.60 -0.9
352,753 + Synpcc7942_0359 0.62 +0.9
352,754 + Synpcc7942_0359 0.62 +2.3
352,769 + Synpcc7942_0359 0.63 -1.1
352,769 + Synpcc7942_0359 0.63 +2.2
352,777 - Synpcc7942_0359 0.64 +2.1
352,785 - Synpcc7942_0359 0.64 +1.2
352,786 - Synpcc7942_0359 0.64 +1.8
352,874 + Synpcc7942_0359 0.72 -0.2
352,895 + Synpcc7942_0359 0.74 +2.8
352,898 - Synpcc7942_0359 0.74 -1.2
352,992 - Synpcc7942_0359 0.82 -0.7
353,010 - Synpcc7942_0359 0.83 +1.4
353,010 - Synpcc7942_0359 0.83 +0.3
353,016 + Synpcc7942_0359 0.84 +1.8
353,034 + Synpcc7942_0359 0.85 +0.7
353,042 - Synpcc7942_0359 0.86 +1.7
353,057 + Synpcc7942_0359 0.87 +0.9
353,068 - Synpcc7942_0359 0.88 -1.5
353,081 - Synpcc7942_0359 0.89 +1.5
353,103 - -2.8
353,132 + -2.3
353,140 + -4.3
353,140 - -2.1
353,148 - -4.7
353,153 + -4.8
353,178 + -3.9
353,203 + -1.8
353,203 + -3.2
353,211 - -2.3
353,221 - -3.9
353,221 - -4.5
353,229 - Synpcc7942_0360 0.11 -1.9
353,256 - Synpcc7942_0360 0.13 -3.1
353,266 - Synpcc7942_0360 0.14 -3.4
353,270 - Synpcc7942_0360 0.14 -2.5
353,287 - Synpcc7942_0360 0.15 -4.2
353,311 + Synpcc7942_0360 0.17 +2.9
353,317 + Synpcc7942_0360 0.18 -3.1
353,325 - Synpcc7942_0360 0.19 -2.7
353,370 + Synpcc7942_0360 0.22 -3.7
353,380 + Synpcc7942_0360 0.23 -2.4
353,396 - -0.9
353,405 + Synpcc7942_0360 0.25 -3.5
353,405 + Synpcc7942_0360 0.25 -2.9
353,410 + Synpcc7942_0360 0.26 -1.5
353,450 + Synpcc7942_0360 0.29 -1.8
353,450 + Synpcc7942_0360 0.29 -1.5
353,458 - Synpcc7942_0360 0.30 -3.3
353,463 - Synpcc7942_0360 0.30 -3.3
353,465 - Synpcc7942_0360 0.30 -2.1
353,473 - Synpcc7942_0360 0.31 -3.0
353,473 - Synpcc7942_0360 0.31 -5.1
353,489 + Synpcc7942_0360 0.32 -3.0
353,489 + Synpcc7942_0360 0.32 -2.1
353,498 - Synpcc7942_0360 0.33 -2.5
353,522 + Synpcc7942_0360 0.35 -4.3
353,522 + Synpcc7942_0360 0.35 -1.9
353,522 + Synpcc7942_0360 0.35 -3.4
353,522 + Synpcc7942_0360 0.35 -2.3
353,530 - Synpcc7942_0360 0.36 -2.6
353,530 - Synpcc7942_0360 0.36 -5.6
353,541 + Synpcc7942_0360 0.37 -2.0
353,545 + Synpcc7942_0360 0.37 -5.0
353,549 - Synpcc7942_0360 0.37 -3.0
353,562 + Synpcc7942_0360 0.38 -3.4
353,562 + Synpcc7942_0360 0.38 -2.1
353,567 + Synpcc7942_0360 0.39 -1.7
353,567 + Synpcc7942_0360 0.39 -4.5
353,570 - Synpcc7942_0360 0.39 -2.1
353,574 + Synpcc7942_0360 0.39 -4.0
353,575 - Synpcc7942_0360 0.39 -3.0
353,575 - Synpcc7942_0360 0.39 -1.6
353,581 - Synpcc7942_0360 0.40 -4.7
353,581 - Synpcc7942_0360 0.40 -4.3
353,588 - Synpcc7942_0360 0.41 -1.3
353,613 + Synpcc7942_0360 0.43 -4.5
353,677 + Synpcc7942_0360 0.48 -3.9
353,682 + +6.3
353,703 + Synpcc7942_0360 0.50 +0.1
353,711 + Synpcc7942_0360 0.51 -1.1
353,721 - Synpcc7942_0360 0.52 -4.7
353,723 + Synpcc7942_0360 0.52 -3.6
353,736 - Synpcc7942_0360 0.53 -2.3
353,748 - Synpcc7942_0360 0.54 -4.5
353,802 + Synpcc7942_0360 0.58 -4.8
353,834 - Synpcc7942_0360 0.61 -2.7
353,848 + Synpcc7942_0360 0.62 -3.1
353,848 + Synpcc7942_0360 0.62 -3.7
353,860 + Synpcc7942_0360 0.63 -3.2
353,860 + Synpcc7942_0360 0.63 -3.1
353,906 - Synpcc7942_0360 0.67 -4.8
353,926 - Synpcc7942_0360 0.69 -3.0
353,975 + Synpcc7942_0360 0.73 -3.7
353,995 - Synpcc7942_0360 0.75 -2.3
353,996 - Synpcc7942_0360 0.75 -2.2
353,996 - Synpcc7942_0360 0.75 -2.0
354,022 + Synpcc7942_0360 0.77 -1.3
354,030 - Synpcc7942_0360 0.77 -3.1
354,070 - Synpcc7942_0360 0.81 -4.1
354,077 - Synpcc7942_0360 0.81 -3.9
354,077 - Synpcc7942_0360 0.81 -3.9
354,079 + Synpcc7942_0360 0.82 -4.7
354,095 + Synpcc7942_0360 0.83 -1.9
354,095 + Synpcc7942_0360 0.83 -3.2
354,113 + Synpcc7942_0360 0.84 -4.0
354,153 - Synpcc7942_0360 0.88 -2.1
354,199 + -2.4
354,202 - -0.2

Or see this region's nucleotide sequence