Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ictB and dc13 are separated by 30 nucleotides dc13 and Synpcc7942_0359 are separated by 75 nucleotides
Synpcc7942_0357: ictB - Inorganic carbon transporter, at 349,875 to 351,278
ictB
Synpcc7942_0358: dc13 - tRNA (guanine-N(7))-methyltransferase, at 351,309 to 351,950
dc13
Synpcc7942_0359: Synpcc7942_0359 - hypothetical protein, at 352,026 to 353,207
_0359
Position (kb) 351
352 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 351.282 kb on - strand at 351.287 kb on + strand at 351.299 kb on + strand at 351.300 kb on + strand at 351.305 kb on - strand at 351.307 kb on + strand at 351.331 kb on - strand at 351.340 kb on + strand at 351.343 kb on - strand at 351.456 kb on + strand, within dc13 at 351.505 kb on - strand, within dc13 at 351.506 kb on + strand, within dc13 at 351.514 kb on - strand, within dc13 at 351.529 kb on + strand, within dc13 at 351.613 kb on - strand, within dc13 at 351.618 kb on - strand, within dc13 at 351.618 kb on - strand, within dc13 at 351.678 kb on + strand, within dc13 at 351.704 kb on + strand, within dc13 at 351.704 kb on + strand, within dc13 at 351.710 kb on - strand at 351.788 kb on - strand, within dc13 at 351.788 kb on - strand, within dc13 at 351.789 kb on - strand at 351.867 kb on - strand, within dc13 at 351.867 kb on - strand, within dc13 at 351.867 kb on - strand, within dc13 at 351.869 kb on + strand, within dc13 at 351.874 kb on - strand, within dc13 at 351.893 kb on - strand at 351.894 kb on - strand at 351.927 kb on - strand at 351.935 kb on + strand at 351.960 kb on + strand at 351.981 kb on + strand at 351.983 kb on - strand at 351.986 kb on + strand at 351.989 kb on - strand at 351.999 kb on - strand at 352.011 kb on + strand at 352.019 kb on - strand at 352.031 kb on - strand at 352.052 kb on + strand at 352.052 kb on + strand at 352.052 kb on + strand at 352.060 kb on - strand at 352.060 kb on - strand at 352.074 kb on - strand at 352.126 kb on + strand at 352.145 kb on + strand, within Synpcc7942_0359 at 352.145 kb on + strand, within Synpcc7942_0359 at 352.149 kb on - strand, within Synpcc7942_0359 at 352.180 kb on + strand, within Synpcc7942_0359 at 352.197 kb on + strand, within Synpcc7942_0359 at 352.206 kb on - strand, within Synpcc7942_0359 at 352.259 kb on + strand, within Synpcc7942_0359 at 352.267 kb on - strand, within Synpcc7942_0359 at 352.268 kb on + strand, within Synpcc7942_0359 at 352.268 kb on + strand, within Synpcc7942_0359 at 352.273 kb on + strand, within Synpcc7942_0359 at 352.276 kb on - strand, within Synpcc7942_0359 at 352.277 kb on - strand, within Synpcc7942_0359 at 352.281 kb on - strand, within Synpcc7942_0359 at 352.281 kb on - strand, within Synpcc7942_0359 at 352.324 kb on + strand, within Synpcc7942_0359 at 352.339 kb on + strand, within Synpcc7942_0359 at 352.394 kb on - strand, within Synpcc7942_0359 at 352.402 kb on - strand, within Synpcc7942_0359 at 352.413 kb on + strand, within Synpcc7942_0359 at 352.533 kb on + strand, within Synpcc7942_0359 at 352.533 kb on + strand, within Synpcc7942_0359 at 352.541 kb on - strand, within Synpcc7942_0359 at 352.541 kb on - strand, within Synpcc7942_0359 at 352.546 kb on - strand, within Synpcc7942_0359 at 352.563 kb on + strand, within Synpcc7942_0359 at 352.563 kb on + strand, within Synpcc7942_0359 at 352.563 kb on + strand, within Synpcc7942_0359 at 352.571 kb on - strand, within Synpcc7942_0359 at 352.571 kb on - strand, within Synpcc7942_0359 at 352.590 kb on - strand, within Synpcc7942_0359 at 352.607 kb on + strand, within Synpcc7942_0359 at 352.607 kb on + strand, within Synpcc7942_0359 at 352.664 kb on - strand, within Synpcc7942_0359 at 352.665 kb on + strand, within Synpcc7942_0359 at 352.670 kb on + strand, within Synpcc7942_0359 at 352.683 kb on - strand, within Synpcc7942_0359 at 352.692 kb on + strand, within Synpcc7942_0359 at 352.723 kb on + strand, within Synpcc7942_0359 at 352.728 kb on - strand, within Synpcc7942_0359 at 352.736 kb on - strand, within Synpcc7942_0359 at 352.753 kb on + strand, within Synpcc7942_0359 at 352.754 kb on + strand, within Synpcc7942_0359 at 352.769 kb on + strand, within Synpcc7942_0359 at 352.769 kb on + strand, within Synpcc7942_0359 at 352.777 kb on - strand, within Synpcc7942_0359 at 352.785 kb on - strand, within Synpcc7942_0359 at 352.786 kb on - strand, within Synpcc7942_0359 at 352.874 kb on + strand, within Synpcc7942_0359 at 352.895 kb on + strand, within Synpcc7942_0359 at 352.898 kb on - strand, within Synpcc7942_0359
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 351,282 - -2.2 351,287 + -1.3 351,299 + -1.0 351,300 + -2.2 351,305 - -2.3 351,307 + +1.1 351,331 - -1.3 351,340 + -0.9 351,343 - +0.6 351,456 + dc13 Synpcc7942_0358 0.23 +3.0 351,505 - dc13 Synpcc7942_0358 0.31 -2.0 351,506 + dc13 Synpcc7942_0358 0.31 -2.4 351,514 - dc13 Synpcc7942_0358 0.32 +1.5 351,529 + dc13 Synpcc7942_0358 0.34 +1.8 351,613 - dc13 Synpcc7942_0358 0.47 +2.7 351,618 - dc13 Synpcc7942_0358 0.48 +2.8 351,618 - dc13 Synpcc7942_0358 0.48 +2.0 351,678 + dc13 Synpcc7942_0358 0.57 +4.9 351,704 + dc13 Synpcc7942_0358 0.62 +3.2 351,704 + dc13 Synpcc7942_0358 0.62 +1.7 351,710 - -0.1 351,788 - dc13 Synpcc7942_0358 0.75 +2.4 351,788 - dc13 Synpcc7942_0358 0.75 -1.5 351,789 - +0.8 351,867 - dc13 Synpcc7942_0358 0.87 +5.6 351,867 - dc13 Synpcc7942_0358 0.87 -0.7 351,867 - dc13 Synpcc7942_0358 0.87 -0.5 351,869 + dc13 Synpcc7942_0358 0.87 +1.0 351,874 - dc13 Synpcc7942_0358 0.88 +2.8 351,893 - +3.6 351,894 - +3.3 351,927 - +3.8 351,935 + +2.0 351,960 + -1.5 351,981 + +0.8 351,983 - -2.5 351,986 + +0.3 351,989 - +1.8 351,999 - -1.2 352,011 + +1.1 352,019 - +0.9 352,031 - +1.6 352,052 + -2.9 352,052 + -0.9 352,052 + -1.2 352,060 - -2.9 352,060 - +0.1 352,074 - +0.2 352,126 + +2.4 352,145 + Synpcc7942_0359 0.10 +0.5 352,145 + Synpcc7942_0359 0.10 -0.9 352,149 - Synpcc7942_0359 0.10 -0.9 352,180 + Synpcc7942_0359 0.13 +0.1 352,197 + Synpcc7942_0359 0.14 -0.7 352,206 - Synpcc7942_0359 0.15 +2.7 352,259 + Synpcc7942_0359 0.20 -1.5 352,267 - Synpcc7942_0359 0.20 +1.3 352,268 + Synpcc7942_0359 0.20 -0.0 352,268 + Synpcc7942_0359 0.20 -1.3 352,273 + Synpcc7942_0359 0.21 +1.1 352,276 - Synpcc7942_0359 0.21 -1.3 352,277 - Synpcc7942_0359 0.21 +3.1 352,281 - Synpcc7942_0359 0.22 -4.1 352,281 - Synpcc7942_0359 0.22 +2.3 352,324 + Synpcc7942_0359 0.25 -0.7 352,339 + Synpcc7942_0359 0.26 -1.3 352,394 - Synpcc7942_0359 0.31 +2.6 352,402 - Synpcc7942_0359 0.32 -0.5 352,413 + Synpcc7942_0359 0.33 -0.8 352,533 + Synpcc7942_0359 0.43 +1.4 352,533 + Synpcc7942_0359 0.43 +0.7 352,541 - Synpcc7942_0359 0.44 -2.6 352,541 - Synpcc7942_0359 0.44 +0.9 352,546 - Synpcc7942_0359 0.44 -0.3 352,563 + Synpcc7942_0359 0.45 -1.5 352,563 + Synpcc7942_0359 0.45 -2.0 352,563 + Synpcc7942_0359 0.45 +3.6 352,571 - Synpcc7942_0359 0.46 +0.3 352,571 - Synpcc7942_0359 0.46 +1.6 352,590 - Synpcc7942_0359 0.48 -2.0 352,607 + Synpcc7942_0359 0.49 +2.7 352,607 + Synpcc7942_0359 0.49 +0.1 352,664 - Synpcc7942_0359 0.54 -0.3 352,665 + Synpcc7942_0359 0.54 +1.8 352,670 + Synpcc7942_0359 0.54 +0.3 352,683 - Synpcc7942_0359 0.56 +0.8 352,692 + Synpcc7942_0359 0.56 -0.7 352,723 + Synpcc7942_0359 0.59 -0.8 352,728 - Synpcc7942_0359 0.59 -0.5 352,736 - Synpcc7942_0359 0.60 -0.9 352,753 + Synpcc7942_0359 0.62 +0.9 352,754 + Synpcc7942_0359 0.62 +2.3 352,769 + Synpcc7942_0359 0.63 -1.1 352,769 + Synpcc7942_0359 0.63 +2.2 352,777 - Synpcc7942_0359 0.64 +2.1 352,785 - Synpcc7942_0359 0.64 +1.2 352,786 - Synpcc7942_0359 0.64 +1.8 352,874 + Synpcc7942_0359 0.72 -0.2 352,895 + Synpcc7942_0359 0.74 +2.8 352,898 - Synpcc7942_0359 0.74 -1.2
Or see this region's nucleotide sequence