Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bgl and rbfA overlap by 4 nucleotides rbfA and ycf33 are separated by 51 nucleotides ycf33 and ictB are separated by 728 nucleotides
Synpcc7942_0354: bgl - Beta-glucosidase-related glycosidase-like, at 346,832 to 348,460
bgl
Synpcc7942_0355: rbfA - ribosome-binding factor A, at 348,457 to 348,870
rbfA
Synpcc7942_0356: ycf33 - conserved hypothetical protein YCF33, at 348,922 to 349,146
ycf33
Synpcc7942_0357: ictB - Inorganic carbon transporter, at 349,875 to 351,278
ictB
Position (kb) 348
349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 347.927 kb on - strand, within bgl at 347.985 kb on - strand, within bgl at 348.018 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.090 kb on + strand, within bgl at 348.099 kb on - strand, within bgl at 348.102 kb on - strand, within bgl at 348.112 kb on - strand, within bgl at 348.120 kb on - strand, within bgl at 348.123 kb on + strand, within bgl at 348.131 kb on - strand, within bgl at 348.141 kb on - strand, within bgl at 348.149 kb on + strand, within bgl at 348.157 kb on - strand, within bgl at 348.165 kb on + strand, within bgl at 348.178 kb on - strand, within bgl at 348.178 kb on - strand at 348.183 kb on - strand, within bgl at 348.201 kb on + strand at 348.245 kb on + strand, within bgl at 348.273 kb on - strand, within bgl at 348.344 kb on - strand at 348.344 kb on - strand at 348.349 kb on - strand at 348.381 kb on + strand at 348.393 kb on + strand at 348.403 kb on + strand at 348.415 kb on + strand at 348.415 kb on + strand at 348.422 kb on + strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.427 kb on + strand at 348.435 kb on - strand at 348.468 kb on - strand at 348.473 kb on - strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.489 kb on + strand at 348.496 kb on - strand at 348.573 kb on - strand, within rbfA at 348.625 kb on + strand, within rbfA at 348.633 kb on - strand, within rbfA at 348.656 kb on + strand, within rbfA at 348.693 kb on - strand, within rbfA at 348.744 kb on - strand, within rbfA at 348.758 kb on + strand, within rbfA at 348.761 kb on - strand, within rbfA at 348.763 kb on + strand, within rbfA at 348.768 kb on + strand, within rbfA at 348.771 kb on - strand, within rbfA at 348.797 kb on - strand, within rbfA at 348.824 kb on + strand, within rbfA at 348.845 kb on + strand at 348.867 kb on + strand at 348.892 kb on + strand at 348.907 kb on - strand at 348.910 kb on - strand at 348.914 kb on + strand at 348.917 kb on - strand at 348.935 kb on - strand at 348.953 kb on - strand, within ycf33 at 348.965 kb on - strand at 348.965 kb on - strand, within ycf33 at 349.164 kb on + strand at 349.206 kb on + strand at 349.206 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.252 kb on + strand at 349.279 kb on + strand at 349.279 kb on + strand at 349.287 kb on - strand at 349.301 kb on + strand at 349.344 kb on - strand at 349.344 kb on - strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.371 kb on - strand at 349.377 kb on - strand at 349.384 kb on + strand at 349.453 kb on - strand at 349.460 kb on - strand at 349.476 kb on - strand at 349.495 kb on + strand at 349.505 kb on - strand at 349.505 kb on - strand at 349.518 kb on + strand at 349.520 kb on - strand at 349.573 kb on + strand at 349.580 kb on - strand at 349.581 kb on - strand at 349.588 kb on + strand at 349.615 kb on + strand at 349.673 kb on - strand at 349.691 kb on - strand at 349.704 kb on + strand at 349.705 kb on + strand at 349.812 kb on + strand at 349.820 kb on - strand at 349.848 kb on + strand at 349.893 kb on + strand at 349.932 kb on - strand at 349.932 kb on - strand at 349.942 kb on - strand at 349.960 kb on - strand at 349.960 kb on - strand at 349.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 347,927 - bgl Synpcc7942_0354 0.67 +3.8 347,985 - bgl Synpcc7942_0354 0.71 +2.0 348,018 + bgl Synpcc7942_0354 0.73 +1.5 348,035 + bgl Synpcc7942_0354 0.74 +1.0 348,035 + bgl Synpcc7942_0354 0.74 +0.3 348,090 + bgl Synpcc7942_0354 0.77 +1.0 348,099 - bgl Synpcc7942_0354 0.78 +0.5 348,102 - bgl Synpcc7942_0354 0.78 +1.2 348,112 - bgl Synpcc7942_0354 0.79 -0.3 348,120 - bgl Synpcc7942_0354 0.79 +2.0 348,123 + bgl Synpcc7942_0354 0.79 -0.6 348,131 - bgl Synpcc7942_0354 0.80 +0.8 348,141 - bgl Synpcc7942_0354 0.80 -1.6 348,149 + bgl Synpcc7942_0354 0.81 -0.7 348,157 - bgl Synpcc7942_0354 0.81 +0.8 348,165 + bgl Synpcc7942_0354 0.82 -0.8 348,178 - bgl Synpcc7942_0354 0.83 -0.0 348,178 - -1.0 348,183 - bgl Synpcc7942_0354 0.83 +1.0 348,201 + -0.5 348,245 + bgl Synpcc7942_0354 0.87 -2.2 348,273 - bgl Synpcc7942_0354 0.88 +0.1 348,344 - -1.5 348,344 - -1.5 348,349 - +0.1 348,381 + +0.7 348,393 + +1.3 348,403 + -1.5 348,415 + -1.8 348,415 + -0.6 348,422 + +2.5 348,423 - +0.4 348,423 - -1.5 348,423 - +1.1 348,427 + -1.0 348,435 - +1.8 348,468 - -1.8 348,473 - +1.6 348,475 + -2.9 348,475 + -1.2 348,475 + -1.0 348,489 + -0.3 348,496 - +1.6 348,573 - rbfA Synpcc7942_0355 0.28 -2.0 348,625 + rbfA Synpcc7942_0355 0.41 -2.6 348,633 - rbfA Synpcc7942_0355 0.43 -3.4 348,656 + rbfA Synpcc7942_0355 0.48 -4.1 348,693 - rbfA Synpcc7942_0355 0.57 +3.2 348,744 - rbfA Synpcc7942_0355 0.69 -2.6 348,758 + rbfA Synpcc7942_0355 0.73 -3.1 348,761 - rbfA Synpcc7942_0355 0.73 -1.2 348,763 + rbfA Synpcc7942_0355 0.74 -2.6 348,768 + rbfA Synpcc7942_0355 0.75 -1.3 348,771 - rbfA Synpcc7942_0355 0.76 -3.3 348,797 - rbfA Synpcc7942_0355 0.82 -0.9 348,824 + rbfA Synpcc7942_0355 0.89 -1.4 348,845 + -0.9 348,867 + -0.9 348,892 + +1.4 348,907 - +0.4 348,910 - +0.9 348,914 + -1.3 348,917 - -3.2 348,935 - -2.0 348,953 - ycf33 Synpcc7942_0356 0.14 -3.7 348,965 - -1.0 348,965 - ycf33 Synpcc7942_0356 0.19 -3.8 349,164 + -0.7 349,206 + +1.2 349,206 + -1.0 349,220 + -0.4 349,220 + -2.2 349,220 + -2.0 349,220 + -1.7 349,220 + +1.0 349,220 + -1.8 349,220 + -0.3 349,220 + +2.5 349,228 - +1.2 349,228 - -0.4 349,228 - +0.5 349,228 - +0.7 349,228 - -0.4 349,228 - +0.5 349,228 - +1.5 349,228 - -1.7 349,228 - -1.3 349,228 - -2.7 349,228 - -0.5 349,252 + -0.7 349,279 + +2.3 349,279 + +1.2 349,287 - -0.9 349,301 + -0.9 349,344 - +0.6 349,344 - +1.0 349,369 + +0.1 349,369 + -2.2 349,369 + -1.5 349,371 - +1.7 349,377 - -0.7 349,384 + +0.2 349,453 - +0.4 349,460 - -0.9 349,476 - +1.1 349,495 + +2.8 349,505 - -2.0 349,505 - -0.2 349,518 + +1.0 349,520 - +0.9 349,573 + -1.3 349,580 - +0.7 349,581 - -0.3 349,588 + +0.8 349,615 + +0.9 349,673 - -3.6 349,691 - -1.5 349,704 + +0.3 349,705 + -0.9 349,812 + -2.7 349,820 - -2.9 349,848 + -0.9 349,893 + -1.6 349,932 - +1.4 349,932 - +2.1 349,942 - -0.5 349,960 - +1.1 349,960 - -1.9 349,960 - -2.1
Or see this region's nucleotide sequence