Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0236

Experiment: Flask grown to static phase (untill yellowing)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0234 and Synpcc7942_0235 are separated by 11 nucleotidesSynpcc7942_0235 and Synpcc7942_0236 are separated by 340 nucleotidesSynpcc7942_0236 and Synpcc7942_0237 are separated by 7 nucleotidesSynpcc7942_0237 and Synpcc7942_0238 overlap by 1 nucleotides Synpcc7942_0234: Synpcc7942_0234 - hypothetical protein, at 230,158 to 231,150 _0234 Synpcc7942_0235: Synpcc7942_0235 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 231,162 to 231,677 _0235 Synpcc7942_0236: Synpcc7942_0236 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 232,018 to 232,557 _0236 Synpcc7942_0237: Synpcc7942_0237 - hypothetical protein, at 232,565 to 233,143 _0237 Synpcc7942_0238: Synpcc7942_0238 - hypothetical protein, at 233,143 to 234,324 _0238 Position (kb) 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 231.059 kb on + strandat 231.083 kb on + strandat 231.088 kb on - strandat 231.127 kb on + strandat 231.130 kb on + strandat 231.130 kb on + strandat 231.130 kb on + strandat 231.138 kb on - strandat 231.138 kb on - strandat 231.170 kb on + strandat 231.203 kb on - strandat 231.205 kb on - strandat 231.205 kb on - strandat 231.218 kb on - strand, within Synpcc7942_0235at 231.227 kb on - strand, within Synpcc7942_0235at 231.233 kb on + strand, within Synpcc7942_0235at 231.241 kb on - strand, within Synpcc7942_0235at 231.246 kb on + strand, within Synpcc7942_0235at 231.251 kb on - strand, within Synpcc7942_0235at 231.256 kb on + strand, within Synpcc7942_0235at 231.256 kb on + strand, within Synpcc7942_0235at 231.256 kb on + strand, within Synpcc7942_0235at 231.262 kb on + strand, within Synpcc7942_0235at 231.287 kb on - strand, within Synpcc7942_0235at 231.312 kb on - strand, within Synpcc7942_0235at 231.322 kb on - strand, within Synpcc7942_0235at 231.347 kb on + strand, within Synpcc7942_0235at 231.359 kb on - strand, within Synpcc7942_0235at 231.380 kb on - strand, within Synpcc7942_0235at 231.384 kb on + strand, within Synpcc7942_0235at 231.392 kb on - strand, within Synpcc7942_0235at 231.476 kb on + strand, within Synpcc7942_0235at 231.484 kb on - strand, within Synpcc7942_0235at 231.484 kb on - strand, within Synpcc7942_0235at 231.496 kb on - strand, within Synpcc7942_0235at 231.514 kb on + strand, within Synpcc7942_0235at 231.536 kb on + strand, within Synpcc7942_0235at 231.566 kb on - strand, within Synpcc7942_0235at 231.566 kb on - strand, within Synpcc7942_0235at 231.570 kb on + strand, within Synpcc7942_0235at 231.626 kb on - strandat 231.662 kb on - strandat 231.734 kb on + strandat 231.802 kb on + strandat 231.802 kb on + strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.842 kb on - strandat 231.871 kb on + strandat 231.977 kb on + strandat 232.000 kb on + strandat 232.135 kb on + strand, within Synpcc7942_0236at 232.154 kb on + strand, within Synpcc7942_0236at 232.160 kb on + strand, within Synpcc7942_0236at 232.160 kb on + strand, within Synpcc7942_0236at 232.160 kb on + strand, within Synpcc7942_0236at 232.160 kb on + strand, within Synpcc7942_0236at 232.168 kb on - strand, within Synpcc7942_0236at 232.170 kb on + strand, within Synpcc7942_0236at 232.170 kb on + strand, within Synpcc7942_0236at 232.173 kb on - strand, within Synpcc7942_0236at 232.178 kb on - strand, within Synpcc7942_0236at 232.180 kb on - strand, within Synpcc7942_0236at 232.194 kb on - strand, within Synpcc7942_0236at 232.219 kb on + strand, within Synpcc7942_0236at 232.225 kb on - strand, within Synpcc7942_0236at 232.232 kb on - strand, within Synpcc7942_0236at 232.238 kb on - strand, within Synpcc7942_0236at 232.238 kb on - strand, within Synpcc7942_0236at 232.240 kb on - strand, within Synpcc7942_0236at 232.264 kb on + strand, within Synpcc7942_0236at 232.266 kb on + strand, within Synpcc7942_0236at 232.272 kb on - strand, within Synpcc7942_0236at 232.279 kb on + strand, within Synpcc7942_0236at 232.287 kb on - strand, within Synpcc7942_0236at 232.335 kb on + strand, within Synpcc7942_0236at 232.339 kb on + strand, within Synpcc7942_0236at 232.349 kb on + strand, within Synpcc7942_0236at 232.377 kb on - strand, within Synpcc7942_0236at 232.430 kb on + strand, within Synpcc7942_0236at 232.438 kb on - strand, within Synpcc7942_0236at 232.441 kb on + strand, within Synpcc7942_0236at 232.441 kb on + strand, within Synpcc7942_0236at 232.449 kb on - strand, within Synpcc7942_0236at 232.495 kb on - strand, within Synpcc7942_0236at 232.509 kb on + strandat 232.512 kb on - strandat 232.518 kb on + strandat 232.519 kb on + strandat 232.551 kb on + strandat 232.562 kb on + strandat 232.562 kb on + strandat 232.570 kb on - strandat 232.633 kb on + strand, within Synpcc7942_0237at 232.633 kb on + strand, within Synpcc7942_0237at 232.633 kb on + strand, within Synpcc7942_0237at 232.634 kb on + strand, within Synpcc7942_0237at 232.641 kb on - strand, within Synpcc7942_0237at 232.641 kb on - strand, within Synpcc7942_0237at 232.641 kb on - strand, within Synpcc7942_0237at 232.641 kb on - strand, within Synpcc7942_0237at 232.677 kb on - strand, within Synpcc7942_0237at 232.729 kb on + strand, within Synpcc7942_0237at 232.729 kb on + strand, within Synpcc7942_0237at 232.743 kb on + strand, within Synpcc7942_0237at 232.743 kb on + strand, within Synpcc7942_0237at 232.743 kb on + strand, within Synpcc7942_0237at 232.744 kb on + strand, within Synpcc7942_0237at 232.752 kb on - strand, within Synpcc7942_0237at 232.769 kb on + strand, within Synpcc7942_0237at 232.777 kb on - strand, within Synpcc7942_0237at 232.794 kb on + strand, within Synpcc7942_0237at 232.804 kb on - strand, within Synpcc7942_0237at 232.807 kb on + strand, within Synpcc7942_0237at 232.813 kb on - strand, within Synpcc7942_0237at 232.815 kb on - strand, within Synpcc7942_0237at 232.831 kb on - strand, within Synpcc7942_0237at 232.838 kb on - strand, within Synpcc7942_0237at 232.838 kb on - strand, within Synpcc7942_0237at 232.852 kb on + strand, within Synpcc7942_0237at 232.916 kb on + strand, within Synpcc7942_0237at 232.920 kb on + strand, within Synpcc7942_0237at 232.928 kb on + strand, within Synpcc7942_0237at 232.928 kb on - strand, within Synpcc7942_0237at 232.957 kb on - strand, within Synpcc7942_0237at 232.965 kb on + strand, within Synpcc7942_0237at 232.976 kb on - strand, within Synpcc7942_0237at 232.988 kb on + strand, within Synpcc7942_0237at 232.989 kb on - strand, within Synpcc7942_0237at 233.006 kb on + strand, within Synpcc7942_0237at 233.014 kb on - strand, within Synpcc7942_0237at 233.014 kb on - strand, within Synpcc7942_0237at 233.019 kb on - strand, within Synpcc7942_0237at 233.024 kb on - strand, within Synpcc7942_0237at 233.024 kb on - strand, within Synpcc7942_0237at 233.024 kb on - strand, within Synpcc7942_0237at 233.058 kb on + strand, within Synpcc7942_0237at 233.073 kb on + strand, within Synpcc7942_0237at 233.074 kb on - strand, within Synpcc7942_0237at 233.094 kb on + strandat 233.116 kb on - strandat 233.149 kb on - strandat 233.151 kb on + strandat 233.159 kb on - strandat 233.168 kb on + strandat 233.188 kb on + strandat 233.188 kb on + strandat 233.241 kb on - strandat 233.246 kb on + strandat 233.260 kb on + strandat 233.261 kb on + strandat 233.284 kb on + strand, within Synpcc7942_0238at 233.284 kb on + strand, within Synpcc7942_0238at 233.285 kb on + strand, within Synpcc7942_0238at 233.292 kb on - strand, within Synpcc7942_0238at 233.292 kb on - strand, within Synpcc7942_0238at 233.343 kb on - strand, within Synpcc7942_0238at 233.383 kb on + strand, within Synpcc7942_0238at 233.496 kb on + strand, within Synpcc7942_0238at 233.501 kb on + strand, within Synpcc7942_0238at 233.504 kb on + strand, within Synpcc7942_0238at 233.506 kb on + strand, within Synpcc7942_0238at 233.506 kb on + strand, within Synpcc7942_0238at 233.522 kb on - strand, within Synpcc7942_0238at 233.538 kb on - strand, within Synpcc7942_0238

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
remove
231,059 + -1.7
231,083 + +1.2
231,088 - -0.8
231,127 + -0.4
231,130 + +0.4
231,130 + -2.9
231,130 + +0.6
231,138 - +0.6
231,138 - -1.1
231,170 + +1.7
231,203 - +0.3
231,205 - -3.2
231,205 - +0.2
231,218 - Synpcc7942_0235 0.11 +0.1
231,227 - Synpcc7942_0235 0.13 +2.2
231,233 + Synpcc7942_0235 0.14 +0.6
231,241 - Synpcc7942_0235 0.15 -0.6
231,246 + Synpcc7942_0235 0.16 +0.8
231,251 - Synpcc7942_0235 0.17 -1.4
231,256 + Synpcc7942_0235 0.18 -1.5
231,256 + Synpcc7942_0235 0.18 +0.8
231,256 + Synpcc7942_0235 0.18 +0.5
231,262 + Synpcc7942_0235 0.19 +1.3
231,287 - Synpcc7942_0235 0.24 +0.5
231,312 - Synpcc7942_0235 0.29 +0.1
231,322 - Synpcc7942_0235 0.31 +1.1
231,347 + Synpcc7942_0235 0.36 -2.1
231,359 - Synpcc7942_0235 0.38 +2.4
231,380 - Synpcc7942_0235 0.42 +2.0
231,384 + Synpcc7942_0235 0.43 +0.3
231,392 - Synpcc7942_0235 0.45 +1.8
231,476 + Synpcc7942_0235 0.61 -2.3
231,484 - Synpcc7942_0235 0.62 -0.5
231,484 - Synpcc7942_0235 0.62 -2.4
231,496 - Synpcc7942_0235 0.65 -2.3
231,514 + Synpcc7942_0235 0.68 -0.3
231,536 + Synpcc7942_0235 0.72 +0.4
231,566 - Synpcc7942_0235 0.78 -1.6
231,566 - Synpcc7942_0235 0.78 +2.5
231,570 + Synpcc7942_0235 0.79 +1.1
231,626 - +0.2
231,662 - -1.2
231,734 + -1.3
231,802 + -2.4
231,802 + +3.6
231,810 - +1.3
231,810 - -2.5
231,810 - -2.1
231,810 - -0.3
231,842 - +0.1
231,871 + -0.5
231,977 + -2.5
232,000 + -1.5
232,135 + Synpcc7942_0236 0.22 -1.5
232,154 + Synpcc7942_0236 0.25 -2.0
232,160 + Synpcc7942_0236 0.26 +1.0
232,160 + Synpcc7942_0236 0.26 +1.7
232,160 + Synpcc7942_0236 0.26 -1.2
232,160 + Synpcc7942_0236 0.26 -0.8
232,168 - Synpcc7942_0236 0.28 -1.8
232,170 + Synpcc7942_0236 0.28 +1.7
232,170 + Synpcc7942_0236 0.28 +1.7
232,173 - Synpcc7942_0236 0.29 -0.3
232,178 - Synpcc7942_0236 0.30 -2.3
232,180 - Synpcc7942_0236 0.30 +0.1
232,194 - Synpcc7942_0236 0.33 +1.2
232,219 + Synpcc7942_0236 0.37 -1.9
232,225 - Synpcc7942_0236 0.38 -0.8
232,232 - Synpcc7942_0236 0.40 -0.0
232,238 - Synpcc7942_0236 0.41 -0.7
232,238 - Synpcc7942_0236 0.41 -1.4
232,240 - Synpcc7942_0236 0.41 -0.7
232,264 + Synpcc7942_0236 0.46 -1.1
232,266 + Synpcc7942_0236 0.46 -1.0
232,272 - Synpcc7942_0236 0.47 +2.7
232,279 + Synpcc7942_0236 0.48 -0.8
232,287 - Synpcc7942_0236 0.50 -1.6
232,335 + Synpcc7942_0236 0.59 +0.8
232,339 + Synpcc7942_0236 0.59 -1.2
232,349 + Synpcc7942_0236 0.61 +1.9
232,377 - Synpcc7942_0236 0.66 -0.0
232,430 + Synpcc7942_0236 0.76 -0.4
232,438 - Synpcc7942_0236 0.78 -1.5
232,441 + Synpcc7942_0236 0.78 +2.6
232,441 + Synpcc7942_0236 0.78 -0.4
232,449 - Synpcc7942_0236 0.80 +0.2
232,495 - Synpcc7942_0236 0.88 -0.9
232,509 + -0.5
232,512 - -0.3
232,518 + +1.9
232,519 + -1.9
232,551 + -1.5
232,562 + +0.9
232,562 + -2.5
232,570 - +2.4
232,633 + Synpcc7942_0237 0.12 +0.2
232,633 + Synpcc7942_0237 0.12 -1.4
232,633 + Synpcc7942_0237 0.12 +1.6
232,634 + Synpcc7942_0237 0.12 -0.9
232,641 - Synpcc7942_0237 0.13 +0.7
232,641 - Synpcc7942_0237 0.13 +1.5
232,641 - Synpcc7942_0237 0.13 -0.6
232,641 - Synpcc7942_0237 0.13 -2.4
232,677 - Synpcc7942_0237 0.19 -0.8
232,729 + Synpcc7942_0237 0.28 +0.3
232,729 + Synpcc7942_0237 0.28 +2.6
232,743 + Synpcc7942_0237 0.31 +0.9
232,743 + Synpcc7942_0237 0.31 +2.2
232,743 + Synpcc7942_0237 0.31 +1.1
232,744 + Synpcc7942_0237 0.31 -2.2
232,752 - Synpcc7942_0237 0.32 -1.4
232,769 + Synpcc7942_0237 0.35 -1.1
232,777 - Synpcc7942_0237 0.37 +3.2
232,794 + Synpcc7942_0237 0.40 +1.1
232,804 - Synpcc7942_0237 0.41 +0.5
232,807 + Synpcc7942_0237 0.42 +0.1
232,813 - Synpcc7942_0237 0.43 -2.3
232,815 - Synpcc7942_0237 0.43 +0.8
232,831 - Synpcc7942_0237 0.46 -0.2
232,838 - Synpcc7942_0237 0.47 -1.3
232,838 - Synpcc7942_0237 0.47 -0.8
232,852 + Synpcc7942_0237 0.50 -1.0
232,916 + Synpcc7942_0237 0.61 -2.7
232,920 + Synpcc7942_0237 0.61 +0.4
232,928 + Synpcc7942_0237 0.63 -0.9
232,928 - Synpcc7942_0237 0.63 -1.1
232,957 - Synpcc7942_0237 0.68 -1.6
232,965 + Synpcc7942_0237 0.69 -1.0
232,976 - Synpcc7942_0237 0.71 -3.0
232,988 + Synpcc7942_0237 0.73 -1.8
232,989 - Synpcc7942_0237 0.73 -0.5
233,006 + Synpcc7942_0237 0.76 +1.5
233,014 - Synpcc7942_0237 0.78 +2.5
233,014 - Synpcc7942_0237 0.78 -0.5
233,019 - Synpcc7942_0237 0.78 +1.8
233,024 - Synpcc7942_0237 0.79 +2.1
233,024 - Synpcc7942_0237 0.79 -2.5
233,024 - Synpcc7942_0237 0.79 +3.3
233,058 + Synpcc7942_0237 0.85 -1.1
233,073 + Synpcc7942_0237 0.88 -0.9
233,074 - Synpcc7942_0237 0.88 -0.0
233,094 + +0.8
233,116 - +1.3
233,149 - -2.2
233,151 + +0.2
233,159 - -0.5
233,168 + +1.8
233,188 + +2.1
233,188 + +1.6
233,241 - +0.1
233,246 + +0.2
233,260 + +0.5
233,261 + +2.1
233,284 + Synpcc7942_0238 0.12 -2.5
233,284 + Synpcc7942_0238 0.12 +0.8
233,285 + Synpcc7942_0238 0.12 -0.9
233,292 - Synpcc7942_0238 0.13 -1.4
233,292 - Synpcc7942_0238 0.13 -2.5
233,343 - Synpcc7942_0238 0.17 +1.6
233,383 + Synpcc7942_0238 0.20 -1.6
233,496 + Synpcc7942_0238 0.30 +1.8
233,501 + Synpcc7942_0238 0.30 -1.6
233,504 + Synpcc7942_0238 0.31 -1.7
233,506 + Synpcc7942_0238 0.31 -0.1
233,506 + Synpcc7942_0238 0.31 +1.5
233,522 - Synpcc7942_0238 0.32 +0.9
233,538 - Synpcc7942_0238 0.33 -2.0

Or see this region's nucleotide sequence