Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0233

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroA and Synpcc7942_0233 are separated by 343 nucleotidesSynpcc7942_0233 and Synpcc7942_0234 are separated by 103 nucleotides Synpcc7942_0232: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 227,939 to 229,285 aroA Synpcc7942_0233: Synpcc7942_0233 - hypothetical protein, at 229,629 to 230,054 _0233 Synpcc7942_0234: Synpcc7942_0234 - hypothetical protein, at 230,158 to 231,150 _0234 Position (kb) 229 230 231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 229.320 kb on + strandat 229.400 kb on + strandat 229.463 kb on - strandat 229.564 kb on - strandat 229.684 kb on - strand, within Synpcc7942_0233at 229.796 kb on + strand, within Synpcc7942_0233at 229.949 kb on + strand, within Synpcc7942_0233at 229.957 kb on - strand, within Synpcc7942_0233at 229.991 kb on + strand, within Synpcc7942_0233at 229.991 kb on + strand, within Synpcc7942_0233at 229.996 kb on + strand, within Synpcc7942_0233at 230.021 kb on - strandat 230.075 kb on + strandat 230.080 kb on + strandat 230.083 kb on - strandat 230.083 kb on - strandat 230.106 kb on - strandat 230.114 kb on + strandat 230.114 kb on + strandat 230.114 kb on + strandat 230.122 kb on + strandat 230.123 kb on - strandat 230.123 kb on - strandat 230.155 kb on + strandat 230.165 kb on + strandat 230.177 kb on + strandat 230.187 kb on - strandat 230.220 kb on + strandat 230.241 kb on + strandat 230.242 kb on + strandat 230.249 kb on + strandat 230.266 kb on + strand, within Synpcc7942_0234at 230.267 kb on + strand, within Synpcc7942_0234at 230.274 kb on - strand, within Synpcc7942_0234at 230.274 kb on - strand, within Synpcc7942_0234at 230.301 kb on - strand, within Synpcc7942_0234at 230.321 kb on + strand, within Synpcc7942_0234at 230.324 kb on - strand, within Synpcc7942_0234at 230.333 kb on + strandat 230.333 kb on + strand, within Synpcc7942_0234at 230.333 kb on + strand, within Synpcc7942_0234at 230.333 kb on + strand, within Synpcc7942_0234at 230.341 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.458 kb on - strand, within Synpcc7942_0234at 230.458 kb on - strand, within Synpcc7942_0234at 230.459 kb on + strand, within Synpcc7942_0234at 230.466 kb on - strand, within Synpcc7942_0234at 230.467 kb on - strand, within Synpcc7942_0234at 230.467 kb on - strand, within Synpcc7942_0234at 230.467 kb on - strand, within Synpcc7942_0234at 230.474 kb on + strand, within Synpcc7942_0234at 230.476 kb on + strand, within Synpcc7942_0234at 230.477 kb on - strand, within Synpcc7942_0234at 230.478 kb on - strand, within Synpcc7942_0234at 230.484 kb on + strand, within Synpcc7942_0234at 230.494 kb on + strand, within Synpcc7942_0234at 230.495 kb on + strand, within Synpcc7942_0234at 230.495 kb on + strand, within Synpcc7942_0234at 230.495 kb on + strand, within Synpcc7942_0234at 230.497 kb on - strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.532 kb on - strand, within Synpcc7942_0234at 230.574 kb on + strand, within Synpcc7942_0234at 230.574 kb on + strand, within Synpcc7942_0234at 230.582 kb on - strand, within Synpcc7942_0234at 230.582 kb on - strand, within Synpcc7942_0234at 230.582 kb on - strand, within Synpcc7942_0234at 230.593 kb on - strand, within Synpcc7942_0234at 230.614 kb on + strand, within Synpcc7942_0234at 230.615 kb on + strand, within Synpcc7942_0234at 230.622 kb on - strand, within Synpcc7942_0234at 230.623 kb on - strand, within Synpcc7942_0234at 230.652 kb on + strand, within Synpcc7942_0234at 230.658 kb on + strand, within Synpcc7942_0234at 230.658 kb on + strand, within Synpcc7942_0234at 230.661 kb on - strand, within Synpcc7942_0234at 230.666 kb on - strand, within Synpcc7942_0234at 230.666 kb on - strand, within Synpcc7942_0234at 230.667 kb on + strand, within Synpcc7942_0234at 230.669 kb on + strand, within Synpcc7942_0234at 230.669 kb on + strand, within Synpcc7942_0234at 230.677 kb on - strand, within Synpcc7942_0234at 230.691 kb on + strand, within Synpcc7942_0234at 230.701 kb on + strand, within Synpcc7942_0234at 230.716 kb on - strand, within Synpcc7942_0234at 230.721 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.796 kb on + strand, within Synpcc7942_0234at 230.796 kb on + strand, within Synpcc7942_0234at 230.799 kb on - strand, within Synpcc7942_0234at 230.809 kb on - strand, within Synpcc7942_0234at 230.809 kb on - strand, within Synpcc7942_0234at 230.821 kb on - strand, within Synpcc7942_0234at 230.835 kb on + strand, within Synpcc7942_0234at 230.848 kb on - strand, within Synpcc7942_0234at 230.854 kb on - strand, within Synpcc7942_0234at 230.858 kb on + strand, within Synpcc7942_0234at 230.860 kb on + strand, within Synpcc7942_0234at 230.866 kb on - strand, within Synpcc7942_0234at 230.866 kb on - strand, within Synpcc7942_0234at 230.868 kb on - strand, within Synpcc7942_0234at 230.879 kb on - strand, within Synpcc7942_0234at 230.885 kb on + strand, within Synpcc7942_0234at 230.885 kb on + strand, within Synpcc7942_0234at 230.890 kb on - strand, within Synpcc7942_0234at 230.893 kb on - strand, within Synpcc7942_0234at 230.893 kb on - strand, within Synpcc7942_0234at 230.893 kb on - strand, within Synpcc7942_0234at 230.902 kb on + strand, within Synpcc7942_0234at 230.925 kb on + strand, within Synpcc7942_0234at 230.933 kb on - strand, within Synpcc7942_0234at 230.936 kb on + strand, within Synpcc7942_0234at 230.944 kb on + strand, within Synpcc7942_0234at 230.959 kb on + strand, within Synpcc7942_0234at 230.959 kb on + strand, within Synpcc7942_0234at 230.959 kb on + strand, within Synpcc7942_0234at 230.961 kb on - strand, within Synpcc7942_0234at 230.967 kb on - strand, within Synpcc7942_0234at 230.985 kb on + strand, within Synpcc7942_0234at 230.985 kb on + strand, within Synpcc7942_0234at 231.003 kb on + strand, within Synpcc7942_0234at 231.011 kb on - strand, within Synpcc7942_0234at 231.014 kb on + strand, within Synpcc7942_0234at 231.014 kb on + strand, within Synpcc7942_0234at 231.014 kb on + strand, within Synpcc7942_0234

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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229,320 + -0.8
229,400 + +0.2
229,463 - -0.8
229,564 - +0.4
229,684 - Synpcc7942_0233 0.13 -2.1
229,796 + Synpcc7942_0233 0.39 -1.1
229,949 + Synpcc7942_0233 0.75 +2.1
229,957 - Synpcc7942_0233 0.77 -1.5
229,991 + Synpcc7942_0233 0.85 -2.5
229,991 + Synpcc7942_0233 0.85 -0.3
229,996 + Synpcc7942_0233 0.86 +0.3
230,021 - +1.6
230,075 + +3.2
230,080 + +2.1
230,083 - +1.3
230,083 - +2.9
230,106 - +0.9
230,114 + -1.3
230,114 + +1.2
230,114 + +1.3
230,122 + -2.7
230,123 - -1.4
230,123 - +1.6
230,155 + +1.9
230,165 + +0.1
230,177 + -3.6
230,187 - +2.2
230,220 + -1.6
230,241 + +1.2
230,242 + -1.1
230,249 + -1.8
230,266 + Synpcc7942_0234 0.11 -4.4
230,267 + Synpcc7942_0234 0.11 -1.2
230,274 - Synpcc7942_0234 0.12 +2.9
230,274 - Synpcc7942_0234 0.12 +4.9
230,301 - Synpcc7942_0234 0.14 -0.7
230,321 + Synpcc7942_0234 0.16 +0.4
230,324 - Synpcc7942_0234 0.17 -1.5
230,333 + +0.1
230,333 + Synpcc7942_0234 0.18 -2.5
230,333 + Synpcc7942_0234 0.18 -0.8
230,333 + Synpcc7942_0234 0.18 -1.9
230,341 - Synpcc7942_0234 0.18 -0.3
230,389 - Synpcc7942_0234 0.23 +0.7
230,389 - Synpcc7942_0234 0.23 -1.1
230,389 - Synpcc7942_0234 0.23 +0.0
230,389 - Synpcc7942_0234 0.23 -1.2
230,389 - Synpcc7942_0234 0.23 +0.1
230,389 - Synpcc7942_0234 0.23 +0.4
230,389 - Synpcc7942_0234 0.23 +0.2
230,458 - Synpcc7942_0234 0.30 -1.7
230,458 - Synpcc7942_0234 0.30 +0.4
230,459 + Synpcc7942_0234 0.30 -2.2
230,466 - Synpcc7942_0234 0.31 +2.5
230,467 - Synpcc7942_0234 0.31 +1.5
230,467 - Synpcc7942_0234 0.31 +0.0
230,467 - Synpcc7942_0234 0.31 -1.8
230,474 + Synpcc7942_0234 0.32 +0.5
230,476 + Synpcc7942_0234 0.32 +2.6
230,477 - Synpcc7942_0234 0.32 -0.3
230,478 - Synpcc7942_0234 0.32 +0.1
230,484 + Synpcc7942_0234 0.33 +2.3
230,494 + Synpcc7942_0234 0.34 +0.8
230,495 + Synpcc7942_0234 0.34 +2.8
230,495 + Synpcc7942_0234 0.34 -2.2
230,495 + Synpcc7942_0234 0.34 -0.7
230,497 - Synpcc7942_0234 0.34 +0.3
230,505 + Synpcc7942_0234 0.35 -1.1
230,505 + Synpcc7942_0234 0.35 -1.1
230,505 + Synpcc7942_0234 0.35 +3.2
230,505 + Synpcc7942_0234 0.35 -0.6
230,505 + Synpcc7942_0234 0.35 +1.1
230,505 + Synpcc7942_0234 0.35 +1.2
230,505 + Synpcc7942_0234 0.35 -0.5
230,505 + Synpcc7942_0234 0.35 +2.8
230,505 + Synpcc7942_0234 0.35 -0.9
230,505 + Synpcc7942_0234 0.35 -1.3
230,505 + Synpcc7942_0234 0.35 +0.1
230,505 + Synpcc7942_0234 0.35 +1.4
230,505 + Synpcc7942_0234 0.35 +0.4
230,513 - Synpcc7942_0234 0.36 +2.0
230,513 - Synpcc7942_0234 0.36 -2.0
230,513 - Synpcc7942_0234 0.36 -2.5
230,513 - Synpcc7942_0234 0.36 -2.2
230,513 - Synpcc7942_0234 0.36 -1.2
230,513 - Synpcc7942_0234 0.36 +3.7
230,513 - Synpcc7942_0234 0.36 +0.8
230,513 - Synpcc7942_0234 0.36 +2.1
230,513 - Synpcc7942_0234 0.36 -1.9
230,513 - Synpcc7942_0234 0.36 +0.2
230,513 - Synpcc7942_0234 0.36 -2.4
230,532 - Synpcc7942_0234 0.38 +2.1
230,574 + Synpcc7942_0234 0.42 -0.9
230,574 + Synpcc7942_0234 0.42 +0.8
230,582 - Synpcc7942_0234 0.43 +0.1
230,582 - Synpcc7942_0234 0.43 -2.3
230,582 - Synpcc7942_0234 0.43 -3.3
230,593 - Synpcc7942_0234 0.44 +1.3
230,614 + Synpcc7942_0234 0.46 -0.8
230,615 + Synpcc7942_0234 0.46 +1.0
230,622 - Synpcc7942_0234 0.47 -0.9
230,623 - Synpcc7942_0234 0.47 -1.1
230,652 + Synpcc7942_0234 0.50 +1.6
230,658 + Synpcc7942_0234 0.50 -0.3
230,658 + Synpcc7942_0234 0.50 -2.0
230,661 - Synpcc7942_0234 0.51 +0.5
230,666 - Synpcc7942_0234 0.51 +0.2
230,666 - Synpcc7942_0234 0.51 -2.4
230,667 + Synpcc7942_0234 0.51 -1.6
230,669 + Synpcc7942_0234 0.51 +2.9
230,669 + Synpcc7942_0234 0.51 -0.4
230,677 - Synpcc7942_0234 0.52 -2.3
230,691 + Synpcc7942_0234 0.54 -0.6
230,701 + Synpcc7942_0234 0.55 -0.5
230,716 - Synpcc7942_0234 0.56 +2.8
230,721 + Synpcc7942_0234 0.57 +0.6
230,724 + Synpcc7942_0234 0.57 -0.0
230,724 + Synpcc7942_0234 0.57 +2.2
230,724 + Synpcc7942_0234 0.57 +0.4
230,724 + Synpcc7942_0234 0.57 -0.2
230,724 + Synpcc7942_0234 0.57 -1.3
230,724 + Synpcc7942_0234 0.57 +2.0
230,796 + Synpcc7942_0234 0.64 -1.1
230,796 + Synpcc7942_0234 0.64 -0.3
230,799 - Synpcc7942_0234 0.65 +0.2
230,809 - Synpcc7942_0234 0.66 +0.3
230,809 - Synpcc7942_0234 0.66 +2.4
230,821 - Synpcc7942_0234 0.67 +2.6
230,835 + Synpcc7942_0234 0.68 +2.2
230,848 - Synpcc7942_0234 0.69 +1.0
230,854 - Synpcc7942_0234 0.70 +0.6
230,858 + Synpcc7942_0234 0.70 -0.8
230,860 + Synpcc7942_0234 0.71 -1.8
230,866 - Synpcc7942_0234 0.71 -1.9
230,866 - Synpcc7942_0234 0.71 -2.2
230,868 - Synpcc7942_0234 0.72 +2.6
230,879 - Synpcc7942_0234 0.73 +1.2
230,885 + Synpcc7942_0234 0.73 -0.9
230,885 + Synpcc7942_0234 0.73 -3.8
230,890 - Synpcc7942_0234 0.74 -2.4
230,893 - Synpcc7942_0234 0.74 +0.8
230,893 - Synpcc7942_0234 0.74 +2.8
230,893 - Synpcc7942_0234 0.74 +1.6
230,902 + Synpcc7942_0234 0.75 +1.4
230,925 + Synpcc7942_0234 0.77 +1.2
230,933 - Synpcc7942_0234 0.78 +0.6
230,936 + Synpcc7942_0234 0.78 +1.2
230,944 + Synpcc7942_0234 0.79 -1.2
230,959 + Synpcc7942_0234 0.81 -0.6
230,959 + Synpcc7942_0234 0.81 +0.7
230,959 + Synpcc7942_0234 0.81 -0.7
230,961 - Synpcc7942_0234 0.81 +0.1
230,967 - Synpcc7942_0234 0.81 +0.4
230,985 + Synpcc7942_0234 0.83 +0.4
230,985 + Synpcc7942_0234 0.83 +0.1
231,003 + Synpcc7942_0234 0.85 -0.5
231,011 - Synpcc7942_0234 0.86 +2.6
231,014 + Synpcc7942_0234 0.86 +0.7
231,014 + Synpcc7942_0234 0.86 +3.8
231,014 + Synpcc7942_0234 0.86 +1.3

Or see this region's nucleotide sequence