Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0205 and Synpcc7942_0206 are separated by 147 nucleotides Synpcc7942_0206 and Synpcc7942_0207 are separated by 62 nucleotides Synpcc7942_0207 and Synpcc7942_0208 are separated by 72 nucleotides
Synpcc7942_0205: Synpcc7942_0205 - nicotinamide-nucleotide adenylyltransferase, at 206,198 to 207,214
_0205
Synpcc7942_0206: Synpcc7942_0206 - hypothetical protein, at 207,362 to 208,750
_0206
Synpcc7942_0207: Synpcc7942_0207 - hypothetical protein, at 208,813 to 208,983
_0207
Synpcc7942_0208: Synpcc7942_0208 - TPR repeat, at 209,056 to 211,827
_0208
Position (kb) 207
208
209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 206.371 kb on + strand, within Synpcc7942_0205 at 206.446 kb on - strand, within Synpcc7942_0205 at 206.550 kb on - strand, within Synpcc7942_0205 at 206.608 kb on - strand, within Synpcc7942_0205 at 206.637 kb on + strand, within Synpcc7942_0205 at 206.686 kb on + strand, within Synpcc7942_0205 at 206.772 kb on - strand, within Synpcc7942_0205 at 206.906 kb on + strand, within Synpcc7942_0205 at 207.229 kb on + strand at 207.229 kb on + strand at 207.229 kb on + strand at 207.237 kb on - strand at 207.237 kb on - strand at 207.237 kb on - strand at 207.261 kb on + strand at 207.300 kb on + strand at 207.300 kb on + strand at 207.317 kb on - strand at 207.333 kb on + strand at 207.393 kb on + strand at 207.413 kb on - strand at 207.427 kb on + strand at 207.512 kb on - strand, within Synpcc7942_0206 at 207.530 kb on + strand, within Synpcc7942_0206 at 207.568 kb on + strand, within Synpcc7942_0206 at 207.576 kb on + strand, within Synpcc7942_0206 at 207.586 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.659 kb on + strand, within Synpcc7942_0206 at 207.667 kb on - strand, within Synpcc7942_0206 at 207.667 kb on - strand, within Synpcc7942_0206 at 207.668 kb on - strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.672 kb on + strand, within Synpcc7942_0206 at 207.686 kb on + strand, within Synpcc7942_0206 at 207.692 kb on + strand, within Synpcc7942_0206 at 207.717 kb on + strand, within Synpcc7942_0206 at 207.717 kb on + strand, within Synpcc7942_0206 at 207.725 kb on - strand, within Synpcc7942_0206 at 207.727 kb on + strand, within Synpcc7942_0206 at 207.741 kb on + strand, within Synpcc7942_0206 at 207.753 kb on + strand, within Synpcc7942_0206 at 207.753 kb on + strand, within Synpcc7942_0206 at 207.761 kb on - strand, within Synpcc7942_0206 at 207.761 kb on - strand, within Synpcc7942_0206 at 207.763 kb on - strand, within Synpcc7942_0206 at 207.766 kb on + strand, within Synpcc7942_0206 at 207.783 kb on - strand, within Synpcc7942_0206 at 207.789 kb on - strand, within Synpcc7942_0206 at 207.899 kb on + strand, within Synpcc7942_0206 at 207.980 kb on - strand, within Synpcc7942_0206 at 207.989 kb on - strand, within Synpcc7942_0206 at 208.082 kb on - strand, within Synpcc7942_0206 at 208.146 kb on + strand, within Synpcc7942_0206 at 208.182 kb on - strand, within Synpcc7942_0206 at 208.288 kb on - strand, within Synpcc7942_0206 at 208.338 kb on + strand, within Synpcc7942_0206 at 208.381 kb on + strand, within Synpcc7942_0206 at 208.407 kb on - strand, within Synpcc7942_0206 at 208.414 kb on + strand, within Synpcc7942_0206 at 208.419 kb on + strand, within Synpcc7942_0206 at 208.419 kb on + strand, within Synpcc7942_0206 at 208.459 kb on + strand, within Synpcc7942_0206 at 208.465 kb on + strand, within Synpcc7942_0206 at 208.478 kb on + strand at 208.478 kb on + strand, within Synpcc7942_0206 at 208.486 kb on - strand, within Synpcc7942_0206 at 208.556 kb on + strand at 208.559 kb on - strand, within Synpcc7942_0206 at 208.559 kb on - strand, within Synpcc7942_0206 at 208.564 kb on - strand, within Synpcc7942_0206 at 208.569 kb on - strand, within Synpcc7942_0206 at 208.575 kb on + strand, within Synpcc7942_0206 at 208.578 kb on - strand, within Synpcc7942_0206 at 208.589 kb on + strand, within Synpcc7942_0206 at 208.610 kb on + strand, within Synpcc7942_0206 at 208.610 kb on + strand, within Synpcc7942_0206 at 208.617 kb on + strand at 208.623 kb on - strand at 208.625 kb on - strand at 208.633 kb on + strand at 208.638 kb on + strand at 208.638 kb on + strand at 208.648 kb on - strand at 208.652 kb on + strand at 208.691 kb on + strand at 208.735 kb on + strand at 208.735 kb on + strand at 208.742 kb on - strand at 208.754 kb on - strand at 208.802 kb on + strand at 208.810 kb on - strand at 208.811 kb on - strand at 208.815 kb on + strand at 208.815 kb on + strand at 208.824 kb on - strand at 208.829 kb on + strand at 208.869 kb on - strand, within Synpcc7942_0207 at 208.869 kb on - strand, within Synpcc7942_0207 at 208.895 kb on - strand, within Synpcc7942_0207 at 208.895 kb on - strand, within Synpcc7942_0207 at 208.950 kb on + strand, within Synpcc7942_0207 at 208.974 kb on - strand at 208.992 kb on - strand at 208.995 kb on + strand at 208.995 kb on + strand at 208.995 kb on + strand at 208.995 kb on + strand at 208.995 kb on + strand at 209.000 kb on + strand at 209.000 kb on + strand at 209.003 kb on - strand at 209.003 kb on - strand at 209.003 kb on - strand at 209.003 kb on - strand at 209.008 kb on - strand at 209.056 kb on + strand at 209.064 kb on - strand at 209.069 kb on - strand at 209.069 kb on - strand at 209.092 kb on - strand at 209.120 kb on + strand at 209.127 kb on - strand at 209.128 kb on - strand at 209.143 kb on - strand at 209.231 kb on - strand at 209.231 kb on - strand at 209.242 kb on - strand at 209.247 kb on + strand at 209.265 kb on + strand at 209.306 kb on - strand at 209.328 kb on - strand at 209.336 kb on + strand, within Synpcc7942_0208 at 209.343 kb on - strand, within Synpcc7942_0208 at 209.343 kb on - strand, within Synpcc7942_0208 at 209.344 kb on - strand, within Synpcc7942_0208 at 209.344 kb on - strand, within Synpcc7942_0208 at 209.377 kb on - strand at 209.400 kb on + strand, within Synpcc7942_0208 at 209.400 kb on + strand, within Synpcc7942_0208 at 209.402 kb on + strand, within Synpcc7942_0208 at 209.402 kb on + strand, within Synpcc7942_0208 at 209.410 kb on - strand, within Synpcc7942_0208 at 209.448 kb on - strand, within Synpcc7942_0208 at 209.450 kb on + strand, within Synpcc7942_0208 at 209.478 kb on - strand, within Synpcc7942_0208 at 209.478 kb on - strand, within Synpcc7942_0208 at 209.478 kb on - strand, within Synpcc7942_0208 at 209.499 kb on - strand, within Synpcc7942_0208 at 209.502 kb on + strand, within Synpcc7942_0208 at 209.521 kb on + strand, within Synpcc7942_0208 at 209.547 kb on + strand, within Synpcc7942_0208 at 209.572 kb on + strand, within Synpcc7942_0208 at 209.590 kb on + strand, within Synpcc7942_0208 at 209.613 kb on + strand, within Synpcc7942_0208 at 209.623 kb on + strand, within Synpcc7942_0208 at 209.628 kb on + strand, within Synpcc7942_0208 at 209.629 kb on + strand, within Synpcc7942_0208 at 209.631 kb on - strand, within Synpcc7942_0208 at 209.631 kb on - strand, within Synpcc7942_0208 at 209.631 kb on - strand, within Synpcc7942_0208 at 209.637 kb on - strand, within Synpcc7942_0208 at 209.647 kb on + strand, within Synpcc7942_0208 at 209.647 kb on + strand, within Synpcc7942_0208 at 209.652 kb on + strand, within Synpcc7942_0208 at 209.655 kb on - strand, within Synpcc7942_0208 at 209.660 kb on - strand, within Synpcc7942_0208 at 209.662 kb on + strand, within Synpcc7942_0208 at 209.662 kb on + strand, within Synpcc7942_0208 at 209.665 kb on - strand, within Synpcc7942_0208 at 209.665 kb on - strand, within Synpcc7942_0208 at 209.667 kb on + strand, within Synpcc7942_0208 at 209.669 kb on + strand, within Synpcc7942_0208 at 209.670 kb on - strand, within Synpcc7942_0208 at 209.675 kb on - strand, within Synpcc7942_0208 at 209.682 kb on + strand, within Synpcc7942_0208 at 209.690 kb on - strand, within Synpcc7942_0208 at 209.690 kb on - strand, within Synpcc7942_0208 at 209.707 kb on - strand, within Synpcc7942_0208 at 209.715 kb on - strand, within Synpcc7942_0208 at 209.718 kb on + strand, within Synpcc7942_0208 at 209.721 kb on - strand, within Synpcc7942_0208 at 209.725 kb on + strand, within Synpcc7942_0208 at 209.725 kb on + strand, within Synpcc7942_0208 at 209.725 kb on + strand, within Synpcc7942_0208 at 209.725 kb on + strand, within Synpcc7942_0208 at 209.733 kb on - strand, within Synpcc7942_0208 at 209.733 kb on - strand, within Synpcc7942_0208 at 209.733 kb on - strand, within Synpcc7942_0208
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 206,371 + Synpcc7942_0205 0.17 -1.4 206,446 - Synpcc7942_0205 0.24 -0.6 206,550 - Synpcc7942_0205 0.35 -1.0 206,608 - Synpcc7942_0205 0.40 -1.9 206,637 + Synpcc7942_0205 0.43 -2.8 206,686 + Synpcc7942_0205 0.48 -2.5 206,772 - Synpcc7942_0205 0.56 -2.8 206,906 + Synpcc7942_0205 0.70 -0.1 207,229 + -0.9 207,229 + -1.0 207,229 + -1.3 207,237 - +1.8 207,237 - +5.9 207,237 - +0.4 207,261 + +2.2 207,300 + +1.0 207,300 + +4.4 207,317 - +0.6 207,333 + +1.6 207,393 + -0.7 207,413 - -0.2 207,427 + -0.3 207,512 - Synpcc7942_0206 0.11 -2.7 207,530 + Synpcc7942_0206 0.12 -2.3 207,568 + Synpcc7942_0206 0.15 +0.3 207,576 + Synpcc7942_0206 0.15 -1.1 207,586 + Synpcc7942_0206 0.16 -1.0 207,659 + Synpcc7942_0206 0.21 -1.4 207,659 + Synpcc7942_0206 0.21 +1.2 207,659 + Synpcc7942_0206 0.21 +1.2 207,667 - Synpcc7942_0206 0.22 -3.2 207,667 - Synpcc7942_0206 0.22 -1.3 207,668 - Synpcc7942_0206 0.22 +1.0 207,672 + Synpcc7942_0206 0.22 -2.0 207,672 + Synpcc7942_0206 0.22 -3.3 207,672 + Synpcc7942_0206 0.22 -0.6 207,686 + Synpcc7942_0206 0.23 -2.6 207,692 + Synpcc7942_0206 0.24 -1.0 207,717 + Synpcc7942_0206 0.26 -0.1 207,717 + Synpcc7942_0206 0.26 -2.9 207,725 - Synpcc7942_0206 0.26 -1.2 207,727 + Synpcc7942_0206 0.26 -1.6 207,741 + Synpcc7942_0206 0.27 +1.5 207,753 + Synpcc7942_0206 0.28 -1.2 207,753 + Synpcc7942_0206 0.28 -1.1 207,761 - Synpcc7942_0206 0.29 -1.4 207,761 - Synpcc7942_0206 0.29 -2.6 207,763 - Synpcc7942_0206 0.29 -2.0 207,766 + Synpcc7942_0206 0.29 -2.7 207,783 - Synpcc7942_0206 0.30 -1.4 207,789 - Synpcc7942_0206 0.31 +2.6 207,899 + Synpcc7942_0206 0.39 +0.4 207,980 - Synpcc7942_0206 0.44 -2.1 207,989 - Synpcc7942_0206 0.45 -1.1 208,082 - Synpcc7942_0206 0.52 +0.8 208,146 + Synpcc7942_0206 0.56 +0.2 208,182 - Synpcc7942_0206 0.59 -1.2 208,288 - Synpcc7942_0206 0.67 -1.4 208,338 + Synpcc7942_0206 0.70 -2.5 208,381 + Synpcc7942_0206 0.73 -2.5 208,407 - Synpcc7942_0206 0.75 -2.2 208,414 + Synpcc7942_0206 0.76 -1.4 208,419 + Synpcc7942_0206 0.76 +0.6 208,419 + Synpcc7942_0206 0.76 -1.7 208,459 + Synpcc7942_0206 0.79 -1.6 208,465 + Synpcc7942_0206 0.79 -0.4 208,478 + -0.3 208,478 + Synpcc7942_0206 0.80 -0.9 208,486 - Synpcc7942_0206 0.81 -2.2 208,556 + -1.7 208,559 - Synpcc7942_0206 0.86 -1.8 208,559 - Synpcc7942_0206 0.86 -1.6 208,564 - Synpcc7942_0206 0.87 +0.0 208,569 - Synpcc7942_0206 0.87 +1.6 208,575 + Synpcc7942_0206 0.87 -4.0 208,578 - Synpcc7942_0206 0.88 -0.5 208,589 + Synpcc7942_0206 0.88 -0.9 208,610 + Synpcc7942_0206 0.90 +1.6 208,610 + Synpcc7942_0206 0.90 +1.7 208,617 + -0.6 208,623 - -1.4 208,625 - +1.9 208,633 + +0.4 208,638 + -2.6 208,638 + +1.2 208,648 - +2.5 208,652 + -1.7 208,691 + -1.8 208,735 + -1.9 208,735 + -3.5 208,742 - -1.8 208,754 - +0.5 208,802 + +0.3 208,810 - -0.2 208,811 - -1.0 208,815 + +2.3 208,815 + +0.2 208,824 - -1.0 208,829 + -2.2 208,869 - Synpcc7942_0207 0.33 -0.3 208,869 - Synpcc7942_0207 0.33 -1.3 208,895 - Synpcc7942_0207 0.48 -2.4 208,895 - Synpcc7942_0207 0.48 -0.1 208,950 + Synpcc7942_0207 0.80 -2.6 208,974 - -0.8 208,992 - +3.4 208,995 + +2.2 208,995 + -2.8 208,995 + -1.0 208,995 + +1.8 208,995 + -1.3 209,000 + +2.2 209,000 + +1.9 209,003 - +0.3 209,003 - -1.4 209,003 - -2.1 209,003 - +1.9 209,008 - -1.1 209,056 + -0.8 209,064 - +2.1 209,069 - +1.4 209,069 - -2.0 209,092 - -1.3 209,120 + +1.2 209,127 - +1.4 209,128 - +1.6 209,143 - +0.6 209,231 - +0.0 209,231 - +3.5 209,242 - +0.2 209,247 + -1.3 209,265 + +0.3 209,306 - +0.0 209,328 - -1.2 209,336 + Synpcc7942_0208 0.10 -1.6 209,343 - Synpcc7942_0208 0.10 +1.4 209,343 - Synpcc7942_0208 0.10 -1.5 209,344 - Synpcc7942_0208 0.10 -2.3 209,344 - Synpcc7942_0208 0.10 -0.8 209,377 - +2.0 209,400 + Synpcc7942_0208 0.12 -1.8 209,400 + Synpcc7942_0208 0.12 +1.4 209,402 + Synpcc7942_0208 0.12 +0.1 209,402 + Synpcc7942_0208 0.12 -1.2 209,410 - Synpcc7942_0208 0.13 -0.7 209,448 - Synpcc7942_0208 0.14 +0.6 209,450 + Synpcc7942_0208 0.14 -1.6 209,478 - Synpcc7942_0208 0.15 -2.0 209,478 - Synpcc7942_0208 0.15 -1.9 209,478 - Synpcc7942_0208 0.15 +0.8 209,499 - Synpcc7942_0208 0.16 +2.8 209,502 + Synpcc7942_0208 0.16 +1.2 209,521 + Synpcc7942_0208 0.17 -0.4 209,547 + Synpcc7942_0208 0.18 +0.9 209,572 + Synpcc7942_0208 0.19 -0.9 209,590 + Synpcc7942_0208 0.19 -1.8 209,613 + Synpcc7942_0208 0.20 +0.3 209,623 + Synpcc7942_0208 0.20 -0.6 209,628 + Synpcc7942_0208 0.21 -1.4 209,629 + Synpcc7942_0208 0.21 +1.8 209,631 - Synpcc7942_0208 0.21 -2.1 209,631 - Synpcc7942_0208 0.21 +0.6 209,631 - Synpcc7942_0208 0.21 +1.7 209,637 - Synpcc7942_0208 0.21 +1.2 209,647 + Synpcc7942_0208 0.21 +0.1 209,647 + Synpcc7942_0208 0.21 -1.9 209,652 + Synpcc7942_0208 0.22 +0.8 209,655 - Synpcc7942_0208 0.22 -1.3 209,660 - Synpcc7942_0208 0.22 +1.2 209,662 + Synpcc7942_0208 0.22 -0.7 209,662 + Synpcc7942_0208 0.22 -0.2 209,665 - Synpcc7942_0208 0.22 +4.1 209,665 - Synpcc7942_0208 0.22 +0.4 209,667 + Synpcc7942_0208 0.22 +1.9 209,669 + Synpcc7942_0208 0.22 -0.9 209,670 - Synpcc7942_0208 0.22 +1.5 209,675 - Synpcc7942_0208 0.22 +1.6 209,682 + Synpcc7942_0208 0.23 -4.2 209,690 - Synpcc7942_0208 0.23 -0.7 209,690 - Synpcc7942_0208 0.23 -1.4 209,707 - Synpcc7942_0208 0.23 -1.9 209,715 - Synpcc7942_0208 0.24 -1.3 209,718 + Synpcc7942_0208 0.24 -1.4 209,721 - Synpcc7942_0208 0.24 -1.0 209,725 + Synpcc7942_0208 0.24 +1.3 209,725 + Synpcc7942_0208 0.24 -3.1 209,725 + Synpcc7942_0208 0.24 -2.4 209,725 + Synpcc7942_0208 0.24 -1.3 209,733 - Synpcc7942_0208 0.24 -1.5 209,733 - Synpcc7942_0208 0.24 +1.6 209,733 - Synpcc7942_0208 0.24 -0.6
Or see this region's nucleotide sequence