Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0187 and Synpcc7942_0188 are separated by 220 nucleotides Synpcc7942_0188 and guaA are separated by 112 nucleotides
Synpcc7942_0187: Synpcc7942_0187 - hypothetical protein, at 184,418 to 185,461
_0187
Synpcc7942_0188: Synpcc7942_0188 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 185,682 to 187,418
_0188
Synpcc7942_0189: guaA - bifunctional GMP synthase/glutamine amidotransferase protein, at 187,531 to 189,258
guaA
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 184.873 kb on + strand, within Synpcc7942_0187 at 184.905 kb on - strand, within Synpcc7942_0187 at 184.944 kb on + strand, within Synpcc7942_0187 at 185.076 kb on - strand, within Synpcc7942_0187 at 185.078 kb on + strand, within Synpcc7942_0187 at 185.275 kb on - strand, within Synpcc7942_0187 at 185.283 kb on - strand, within Synpcc7942_0187 at 185.379 kb on + strand at 185.428 kb on - strand at 185.453 kb on + strand at 185.472 kb on + strand at 185.480 kb on - strand at 185.516 kb on - strand at 185.541 kb on - strand at 185.567 kb on - strand at 185.567 kb on - strand at 185.572 kb on + strand at 185.588 kb on + strand at 185.588 kb on + strand at 185.601 kb on - strand at 185.645 kb on + strand at 185.645 kb on + strand at 185.653 kb on - strand at 185.671 kb on - strand at 185.747 kb on - strand at 185.779 kb on + strand at 185.779 kb on - strand at 185.787 kb on - strand at 185.790 kb on + strand at 185.792 kb on - strand at 185.792 kb on - strand at 185.797 kb on - strand at 185.798 kb on - strand at 185.798 kb on - strand at 185.826 kb on + strand at 185.859 kb on - strand, within Synpcc7942_0188 at 185.865 kb on + strand, within Synpcc7942_0188 at 185.920 kb on + strand, within Synpcc7942_0188 at 185.923 kb on + strand, within Synpcc7942_0188 at 185.938 kb on - strand, within Synpcc7942_0188 at 185.967 kb on + strand, within Synpcc7942_0188 at 185.967 kb on + strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.990 kb on - strand, within Synpcc7942_0188 at 186.037 kb on - strand, within Synpcc7942_0188 at 186.045 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.067 kb on - strand, within Synpcc7942_0188 at 186.068 kb on - strand, within Synpcc7942_0188 at 186.074 kb on - strand, within Synpcc7942_0188 at 186.102 kb on + strand, within Synpcc7942_0188 at 186.152 kb on + strand, within Synpcc7942_0188 at 186.153 kb on + strand, within Synpcc7942_0188 at 186.161 kb on - strand, within Synpcc7942_0188 at 186.167 kb on - strand, within Synpcc7942_0188 at 186.172 kb on - strand, within Synpcc7942_0188 at 186.206 kb on + strand, within Synpcc7942_0188 at 186.218 kb on + strand, within Synpcc7942_0188 at 186.230 kb on + strand, within Synpcc7942_0188 at 186.236 kb on - strand, within Synpcc7942_0188 at 186.237 kb on + strand, within Synpcc7942_0188 at 186.250 kb on - strand, within Synpcc7942_0188 at 186.272 kb on + strand, within Synpcc7942_0188 at 186.272 kb on + strand, within Synpcc7942_0188 at 186.298 kb on - strand, within Synpcc7942_0188 at 186.313 kb on + strand, within Synpcc7942_0188 at 186.364 kb on + strand, within Synpcc7942_0188 at 186.371 kb on - strand, within Synpcc7942_0188 at 186.374 kb on + strand, within Synpcc7942_0188 at 186.382 kb on - strand, within Synpcc7942_0188 at 186.409 kb on + strand, within Synpcc7942_0188 at 186.417 kb on + strand, within Synpcc7942_0188 at 186.417 kb on + strand, within Synpcc7942_0188 at 186.425 kb on - strand, within Synpcc7942_0188 at 186.427 kb on + strand, within Synpcc7942_0188 at 186.427 kb on + strand, within Synpcc7942_0188 at 186.434 kb on + strand, within Synpcc7942_0188 at 186.435 kb on - strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188 at 186.495 kb on + strand, within Synpcc7942_0188 at 186.498 kb on + strand, within Synpcc7942_0188 at 186.503 kb on - strand, within Synpcc7942_0188 at 186.503 kb on - strand, within Synpcc7942_0188 at 186.516 kb on - strand, within Synpcc7942_0188 at 186.537 kb on - strand, within Synpcc7942_0188 at 186.540 kb on + strand, within Synpcc7942_0188 at 186.540 kb on + strand, within Synpcc7942_0188 at 186.540 kb on + strand, within Synpcc7942_0188 at 186.540 kb on + strand, within Synpcc7942_0188 at 186.548 kb on - strand, within Synpcc7942_0188 at 186.567 kb on + strand, within Synpcc7942_0188 at 186.567 kb on + strand, within Synpcc7942_0188 at 186.567 kb on + strand, within Synpcc7942_0188 at 186.567 kb on + strand, within Synpcc7942_0188 at 186.606 kb on + strand at 186.624 kb on - strand, within Synpcc7942_0188 at 186.636 kb on + strand, within Synpcc7942_0188 at 186.649 kb on - strand, within Synpcc7942_0188 at 186.679 kb on + strand, within Synpcc7942_0188 at 186.717 kb on - strand, within Synpcc7942_0188 at 186.750 kb on + strand, within Synpcc7942_0188 at 186.766 kb on + strand, within Synpcc7942_0188 at 186.788 kb on - strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.808 kb on + strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.816 kb on - strand, within Synpcc7942_0188 at 186.817 kb on + strand, within Synpcc7942_0188 at 186.827 kb on - strand, within Synpcc7942_0188 at 186.899 kb on + strand, within Synpcc7942_0188 at 186.907 kb on - strand, within Synpcc7942_0188 at 186.907 kb on - strand, within Synpcc7942_0188 at 186.911 kb on + strand, within Synpcc7942_0188 at 186.918 kb on + strand, within Synpcc7942_0188 at 186.952 kb on + strand, within Synpcc7942_0188 at 186.978 kb on + strand, within Synpcc7942_0188 at 186.996 kb on - strand, within Synpcc7942_0188 at 187.033 kb on + strand, within Synpcc7942_0188 at 187.033 kb on + strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.034 kb on - strand, within Synpcc7942_0188 at 187.041 kb on - strand, within Synpcc7942_0188 at 187.055 kb on + strand, within Synpcc7942_0188 at 187.067 kb on + strand, within Synpcc7942_0188 at 187.067 kb on + strand, within Synpcc7942_0188 at 187.067 kb on + strand, within Synpcc7942_0188 at 187.075 kb on - strand, within Synpcc7942_0188 at 187.077 kb on - strand, within Synpcc7942_0188 at 187.084 kb on + strand, within Synpcc7942_0188 at 187.104 kb on - strand, within Synpcc7942_0188 at 187.136 kb on + strand, within Synpcc7942_0188 at 187.143 kb on - strand, within Synpcc7942_0188 at 187.162 kb on - strand, within Synpcc7942_0188 at 187.205 kb on - strand, within Synpcc7942_0188 at 187.207 kb on - strand, within Synpcc7942_0188 at 187.232 kb on - strand, within Synpcc7942_0188 at 187.235 kb on + strand, within Synpcc7942_0188 at 187.256 kb on - strand at 187.275 kb on - strand at 187.299 kb on - strand at 187.319 kb on + strand at 187.319 kb on + strand at 187.335 kb on + strand at 187.335 kb on + strand at 187.341 kb on + strand at 187.343 kb on - strand at 187.343 kb on - strand at 187.346 kb on + strand at 187.346 kb on + strand at 187.346 kb on + strand at 187.346 kb on + strand at 187.346 kb on + strand at 187.351 kb on + strand at 187.354 kb on - strand at 187.354 kb on - strand at 187.359 kb on + strand at 187.367 kb on - strand at 187.398 kb on + strand at 187.404 kb on + strand at 187.426 kb on - strand at 187.455 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.479 kb on + strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.487 kb on - strand at 187.489 kb on + strand at 187.490 kb on + strand at 187.496 kb on - strand at 187.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 184,873 + Synpcc7942_0187 0.44 -3.7 184,905 - Synpcc7942_0187 0.47 -2.1 184,944 + Synpcc7942_0187 0.50 -3.0 185,076 - Synpcc7942_0187 0.63 -1.1 185,078 + Synpcc7942_0187 0.63 -2.2 185,275 - Synpcc7942_0187 0.82 -3.5 185,283 - Synpcc7942_0187 0.83 -1.8 185,379 + -0.8 185,428 - -3.3 185,453 + +1.9 185,472 + -1.5 185,480 - -3.0 185,516 - -2.7 185,541 - -1.2 185,567 - -0.8 185,567 - +1.0 185,572 + -0.8 185,588 + +0.2 185,588 + +0.6 185,601 - +1.6 185,645 + -0.6 185,645 + -1.0 185,653 - -1.1 185,671 - -1.1 185,747 - +2.8 185,779 + +3.0 185,779 - -1.6 185,787 - -1.8 185,790 + -3.1 185,792 - +0.1 185,792 - -1.6 185,797 - +2.4 185,798 - +0.4 185,798 - +1.3 185,826 + -0.8 185,859 - Synpcc7942_0188 0.10 -2.4 185,865 + Synpcc7942_0188 0.11 +0.2 185,920 + Synpcc7942_0188 0.14 +0.4 185,923 + Synpcc7942_0188 0.14 -1.1 185,938 - Synpcc7942_0188 0.15 -0.7 185,967 + Synpcc7942_0188 0.16 +1.0 185,967 + Synpcc7942_0188 0.16 +2.5 185,975 - Synpcc7942_0188 0.17 -2.8 185,975 - Synpcc7942_0188 0.17 -1.7 185,975 - Synpcc7942_0188 0.17 -1.4 185,975 - Synpcc7942_0188 0.17 -0.6 185,990 - Synpcc7942_0188 0.18 +0.4 186,037 - Synpcc7942_0188 0.20 +0.3 186,045 + Synpcc7942_0188 0.21 -0.1 186,059 + Synpcc7942_0188 0.22 +1.0 186,059 + Synpcc7942_0188 0.22 -3.5 186,059 + Synpcc7942_0188 0.22 +1.0 186,067 - Synpcc7942_0188 0.22 -0.1 186,068 - Synpcc7942_0188 0.22 +1.8 186,074 - Synpcc7942_0188 0.23 -1.4 186,102 + Synpcc7942_0188 0.24 -1.4 186,152 + Synpcc7942_0188 0.27 -0.0 186,153 + Synpcc7942_0188 0.27 -0.7 186,161 - Synpcc7942_0188 0.28 -0.1 186,167 - Synpcc7942_0188 0.28 -1.6 186,172 - Synpcc7942_0188 0.28 -0.1 186,206 + Synpcc7942_0188 0.30 -1.1 186,218 + Synpcc7942_0188 0.31 -1.3 186,230 + Synpcc7942_0188 0.32 +1.4 186,236 - Synpcc7942_0188 0.32 -1.0 186,237 + Synpcc7942_0188 0.32 -0.4 186,250 - Synpcc7942_0188 0.33 -0.7 186,272 + Synpcc7942_0188 0.34 -0.6 186,272 + Synpcc7942_0188 0.34 +1.2 186,298 - Synpcc7942_0188 0.35 +2.2 186,313 + Synpcc7942_0188 0.36 +1.8 186,364 + Synpcc7942_0188 0.39 +2.4 186,371 - Synpcc7942_0188 0.40 +1.5 186,374 + Synpcc7942_0188 0.40 -0.8 186,382 - Synpcc7942_0188 0.40 -0.3 186,409 + Synpcc7942_0188 0.42 +1.1 186,417 + Synpcc7942_0188 0.42 -1.1 186,417 + Synpcc7942_0188 0.42 -0.7 186,425 - Synpcc7942_0188 0.43 -0.3 186,427 + Synpcc7942_0188 0.43 +0.5 186,427 + Synpcc7942_0188 0.43 +1.7 186,434 + Synpcc7942_0188 0.43 +2.5 186,435 - Synpcc7942_0188 0.43 +0.6 186,450 + Synpcc7942_0188 0.44 -1.4 186,450 + Synpcc7942_0188 0.44 +1.9 186,450 + Synpcc7942_0188 0.44 +0.4 186,495 + Synpcc7942_0188 0.47 +1.0 186,498 + Synpcc7942_0188 0.47 -0.7 186,503 - Synpcc7942_0188 0.47 +0.9 186,503 - Synpcc7942_0188 0.47 +0.9 186,516 - Synpcc7942_0188 0.48 +3.7 186,537 - Synpcc7942_0188 0.49 +0.5 186,540 + Synpcc7942_0188 0.49 +0.8 186,540 + Synpcc7942_0188 0.49 -1.7 186,540 + Synpcc7942_0188 0.49 -0.8 186,540 + Synpcc7942_0188 0.49 +1.4 186,548 - Synpcc7942_0188 0.50 -0.8 186,567 + Synpcc7942_0188 0.51 +1.6 186,567 + Synpcc7942_0188 0.51 -1.8 186,567 + Synpcc7942_0188 0.51 -1.9 186,567 + Synpcc7942_0188 0.51 -0.4 186,606 + +1.3 186,624 - Synpcc7942_0188 0.54 -0.1 186,636 + Synpcc7942_0188 0.55 -0.3 186,649 - Synpcc7942_0188 0.56 +1.0 186,679 + Synpcc7942_0188 0.57 +0.6 186,717 - Synpcc7942_0188 0.60 -1.6 186,750 + Synpcc7942_0188 0.61 -2.0 186,766 + Synpcc7942_0188 0.62 +0.0 186,788 - Synpcc7942_0188 0.64 +0.1 186,808 + Synpcc7942_0188 0.65 +2.1 186,808 + Synpcc7942_0188 0.65 +2.1 186,808 + Synpcc7942_0188 0.65 -0.7 186,808 + Synpcc7942_0188 0.65 +1.1 186,808 + Synpcc7942_0188 0.65 -1.5 186,808 + Synpcc7942_0188 0.65 -1.0 186,808 + Synpcc7942_0188 0.65 -1.0 186,816 - Synpcc7942_0188 0.65 +4.4 186,816 - Synpcc7942_0188 0.65 +0.1 186,816 - Synpcc7942_0188 0.65 +0.8 186,816 - Synpcc7942_0188 0.65 -2.6 186,816 - Synpcc7942_0188 0.65 +0.0 186,817 + Synpcc7942_0188 0.65 +0.2 186,827 - Synpcc7942_0188 0.66 +0.9 186,899 + Synpcc7942_0188 0.70 -3.1 186,907 - Synpcc7942_0188 0.71 +0.0 186,907 - Synpcc7942_0188 0.71 -2.9 186,911 + Synpcc7942_0188 0.71 +1.0 186,918 + Synpcc7942_0188 0.71 +4.7 186,952 + Synpcc7942_0188 0.73 +0.3 186,978 + Synpcc7942_0188 0.75 -1.2 186,996 - Synpcc7942_0188 0.76 -0.2 187,033 + Synpcc7942_0188 0.78 +2.7 187,033 + Synpcc7942_0188 0.78 -1.3 187,034 - Synpcc7942_0188 0.78 +2.6 187,034 - Synpcc7942_0188 0.78 -1.9 187,034 - Synpcc7942_0188 0.78 -2.2 187,034 - Synpcc7942_0188 0.78 -2.2 187,034 - Synpcc7942_0188 0.78 -0.2 187,041 - Synpcc7942_0188 0.78 +1.3 187,055 + Synpcc7942_0188 0.79 -0.2 187,067 + Synpcc7942_0188 0.80 +1.3 187,067 + Synpcc7942_0188 0.80 -0.6 187,067 + Synpcc7942_0188 0.80 -2.0 187,075 - Synpcc7942_0188 0.80 +2.0 187,077 - Synpcc7942_0188 0.80 -0.3 187,084 + Synpcc7942_0188 0.81 -1.0 187,104 - Synpcc7942_0188 0.82 -1.3 187,136 + Synpcc7942_0188 0.84 -2.1 187,143 - Synpcc7942_0188 0.84 -1.6 187,162 - Synpcc7942_0188 0.85 -0.1 187,205 - Synpcc7942_0188 0.88 -0.8 187,207 - Synpcc7942_0188 0.88 +2.0 187,232 - Synpcc7942_0188 0.89 +0.0 187,235 + Synpcc7942_0188 0.89 -2.1 187,256 - -0.6 187,275 - -0.3 187,299 - +0.3 187,319 + +2.0 187,319 + -0.5 187,335 + +0.4 187,335 + +2.4 187,341 + +0.8 187,343 - +0.0 187,343 - +2.1 187,346 + -1.1 187,346 + -3.1 187,346 + -0.9 187,346 + -0.6 187,346 + -3.2 187,351 + -0.8 187,354 - -1.3 187,354 - -2.5 187,359 + -1.5 187,367 - +0.5 187,398 + -2.5 187,404 + -2.9 187,426 - +2.2 187,455 + -1.1 187,479 + +1.8 187,479 + +2.4 187,479 + -2.2 187,479 + +1.7 187,479 + +0.9 187,479 + +0.0 187,479 + -1.5 187,479 + +0.5 187,479 + -2.4 187,479 + +0.7 187,479 + +1.0 187,479 + +2.2 187,479 + +2.7 187,479 + +2.9 187,479 + +2.5 187,479 + -1.8 187,479 + +2.8 187,479 + -0.1 187,479 + -1.5 187,479 + +0.3 187,479 + -0.8 187,487 - -1.3 187,487 - +0.2 187,487 - +1.6 187,487 - -3.1 187,487 - +0.8 187,487 - -1.0 187,487 - -1.2 187,487 - -0.0 187,487 - +0.3 187,487 - +1.6 187,487 - -0.6 187,487 - +2.5 187,487 - +3.8 187,487 - -1.8 187,487 - -3.7 187,487 - -0.6 187,487 - -2.4 187,487 - -1.6 187,487 - -1.3 187,487 - -2.4 187,487 - +1.7 187,487 - -2.6 187,487 - +0.8 187,487 - -0.3 187,487 - +2.8 187,487 - -0.6 187,487 - -1.9 187,487 - -3.0 187,489 + -1.1 187,490 + -1.3 187,496 - +3.1 187,522 - -0.3
Or see this region's nucleotide sequence