Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ggt and Synpcc7942_0186 are separated by 13 nucleotides Synpcc7942_0186 and Synpcc7942_0187 are separated by 6 nucleotides Synpcc7942_0187 and Synpcc7942_0188 are separated by 220 nucleotides
Synpcc7942_0185: ggt - gamma-glutamyltransferase. Threonine peptidase. MEROPS family T03, at 182,620 to 184,146
ggt
Synpcc7942_0186: Synpcc7942_0186 - possible DNA polymerase, at 184,160 to 184,411
_0186
Synpcc7942_0187: Synpcc7942_0187 - hypothetical protein, at 184,418 to 185,461
_0187
Synpcc7942_0188: Synpcc7942_0188 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 185,682 to 187,418
_0188
Position (kb) 184
185
186 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 183.420 kb on + strand, within ggt at 183.437 kb on + strand, within ggt at 183.439 kb on + strand, within ggt at 183.440 kb on - strand, within ggt at 183.445 kb on - strand, within ggt at 183.445 kb on - strand, within ggt at 183.458 kb on + strand, within ggt at 183.466 kb on - strand, within ggt at 183.471 kb on - strand, within ggt at 183.480 kb on + strand, within ggt at 183.488 kb on - strand, within ggt at 183.488 kb on - strand, within ggt at 183.517 kb on + strand, within ggt at 183.533 kb on - strand, within ggt at 183.552 kb on - strand, within ggt at 183.592 kb on + strand, within ggt at 183.605 kb on - strand, within ggt at 183.607 kb on + strand, within ggt at 183.612 kb on + strand, within ggt at 183.612 kb on + strand, within ggt at 183.625 kb on - strand at 183.646 kb on + strand, within ggt at 183.649 kb on - strand, within ggt at 183.655 kb on + strand, within ggt at 183.659 kb on - strand, within ggt at 183.672 kb on - strand, within ggt at 183.693 kb on + strand, within ggt at 183.703 kb on + strand, within ggt at 183.703 kb on + strand, within ggt at 183.703 kb on + strand, within ggt at 183.711 kb on - strand, within ggt at 183.728 kb on - strand, within ggt at 183.781 kb on - strand, within ggt at 183.791 kb on + strand, within ggt at 183.801 kb on + strand, within ggt at 183.868 kb on + strand, within ggt at 183.872 kb on + strand, within ggt at 183.879 kb on - strand, within ggt at 183.898 kb on + strand, within ggt at 183.905 kb on + strand, within ggt at 183.905 kb on + strand, within ggt at 183.953 kb on + strand, within ggt at 183.966 kb on - strand, within ggt at 183.966 kb on - strand, within ggt at 183.966 kb on - strand, within ggt at 183.970 kb on + strand, within ggt at 183.976 kb on + strand, within ggt at 183.976 kb on + strand, within ggt at 183.976 kb on + strand, within ggt at 183.984 kb on - strand, within ggt at 183.984 kb on - strand, within ggt at 183.993 kb on + strand, within ggt at 184.001 kb on - strand at 184.006 kb on + strand at 184.006 kb on + strand at 184.014 kb on - strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.029 kb on + strand at 184.037 kb on - strand at 184.039 kb on + strand at 184.039 kb on + strand at 184.045 kb on + strand at 184.070 kb on + strand at 184.103 kb on - strand at 184.127 kb on + strand at 184.129 kb on + strand at 184.152 kb on - strand at 184.159 kb on - strand at 184.170 kb on + strand at 184.170 kb on - strand at 184.173 kb on - strand at 184.177 kb on + strand at 184.178 kb on - strand at 184.183 kb on - strand at 184.220 kb on - strand, within Synpcc7942_0186 at 184.292 kb on + strand, within Synpcc7942_0186 at 184.329 kb on + strand, within Synpcc7942_0186 at 184.342 kb on - strand, within Synpcc7942_0186 at 184.343 kb on + strand, within Synpcc7942_0186 at 184.343 kb on + strand at 184.343 kb on + strand, within Synpcc7942_0186 at 184.343 kb on + strand, within Synpcc7942_0186 at 184.343 kb on + strand, within Synpcc7942_0186 at 184.343 kb on + strand, within Synpcc7942_0186 at 184.351 kb on + strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand, within Synpcc7942_0186 at 184.351 kb on - strand at 184.351 kb on - strand, within Synpcc7942_0186 at 184.377 kb on + strand, within Synpcc7942_0186 at 184.386 kb on + strand at 184.387 kb on + strand at 184.395 kb on - strand at 184.395 kb on - strand at 184.421 kb on + strand at 184.423 kb on - strand at 184.455 kb on - strand at 184.467 kb on - strand at 184.493 kb on + strand at 184.527 kb on + strand, within Synpcc7942_0187 at 184.873 kb on + strand, within Synpcc7942_0187 at 184.905 kb on - strand, within Synpcc7942_0187 at 184.944 kb on + strand, within Synpcc7942_0187 at 185.076 kb on - strand, within Synpcc7942_0187 at 185.078 kb on + strand, within Synpcc7942_0187 at 185.275 kb on - strand, within Synpcc7942_0187 at 185.283 kb on - strand, within Synpcc7942_0187 at 185.379 kb on + strand at 185.428 kb on - strand at 185.453 kb on + strand at 185.472 kb on + strand at 185.480 kb on - strand at 185.516 kb on - strand at 185.541 kb on - strand at 185.567 kb on - strand at 185.567 kb on - strand at 185.572 kb on + strand at 185.588 kb on + strand at 185.588 kb on + strand at 185.601 kb on - strand at 185.645 kb on + strand at 185.645 kb on + strand at 185.653 kb on - strand at 185.671 kb on - strand at 185.747 kb on - strand at 185.779 kb on + strand at 185.779 kb on - strand at 185.787 kb on - strand at 185.790 kb on + strand at 185.792 kb on - strand at 185.792 kb on - strand at 185.797 kb on - strand at 185.798 kb on - strand at 185.798 kb on - strand at 185.826 kb on + strand at 185.859 kb on - strand, within Synpcc7942_0188 at 185.865 kb on + strand, within Synpcc7942_0188 at 185.920 kb on + strand, within Synpcc7942_0188 at 185.923 kb on + strand, within Synpcc7942_0188 at 185.938 kb on - strand, within Synpcc7942_0188 at 185.967 kb on + strand, within Synpcc7942_0188 at 185.967 kb on + strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.975 kb on - strand, within Synpcc7942_0188 at 185.990 kb on - strand, within Synpcc7942_0188 at 186.037 kb on - strand, within Synpcc7942_0188 at 186.045 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.059 kb on + strand, within Synpcc7942_0188 at 186.067 kb on - strand, within Synpcc7942_0188 at 186.068 kb on - strand, within Synpcc7942_0188 at 186.074 kb on - strand, within Synpcc7942_0188 at 186.102 kb on + strand, within Synpcc7942_0188 at 186.152 kb on + strand, within Synpcc7942_0188 at 186.153 kb on + strand, within Synpcc7942_0188 at 186.161 kb on - strand, within Synpcc7942_0188 at 186.167 kb on - strand, within Synpcc7942_0188 at 186.172 kb on - strand, within Synpcc7942_0188 at 186.206 kb on + strand, within Synpcc7942_0188 at 186.218 kb on + strand, within Synpcc7942_0188 at 186.230 kb on + strand, within Synpcc7942_0188 at 186.236 kb on - strand, within Synpcc7942_0188 at 186.237 kb on + strand, within Synpcc7942_0188 at 186.250 kb on - strand, within Synpcc7942_0188 at 186.272 kb on + strand, within Synpcc7942_0188 at 186.272 kb on + strand, within Synpcc7942_0188 at 186.298 kb on - strand, within Synpcc7942_0188 at 186.313 kb on + strand, within Synpcc7942_0188 at 186.364 kb on + strand, within Synpcc7942_0188 at 186.371 kb on - strand, within Synpcc7942_0188 at 186.374 kb on + strand, within Synpcc7942_0188 at 186.382 kb on - strand, within Synpcc7942_0188 at 186.409 kb on + strand, within Synpcc7942_0188 at 186.417 kb on + strand, within Synpcc7942_0188 at 186.417 kb on + strand, within Synpcc7942_0188 at 186.425 kb on - strand, within Synpcc7942_0188 at 186.427 kb on + strand, within Synpcc7942_0188 at 186.427 kb on + strand, within Synpcc7942_0188 at 186.434 kb on + strand, within Synpcc7942_0188 at 186.435 kb on - strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188 at 186.450 kb on + strand, within Synpcc7942_0188
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 183,420 + ggt Synpcc7942_0185 0.52 -1.9 183,437 + ggt Synpcc7942_0185 0.54 -2.3 183,439 + ggt Synpcc7942_0185 0.54 +0.5 183,440 - ggt Synpcc7942_0185 0.54 +1.5 183,445 - ggt Synpcc7942_0185 0.54 -1.9 183,445 - ggt Synpcc7942_0185 0.54 -0.4 183,458 + ggt Synpcc7942_0185 0.55 -1.0 183,466 - ggt Synpcc7942_0185 0.55 +1.7 183,471 - ggt Synpcc7942_0185 0.56 +0.5 183,480 + ggt Synpcc7942_0185 0.56 -1.9 183,488 - ggt Synpcc7942_0185 0.57 -3.5 183,488 - ggt Synpcc7942_0185 0.57 -2.5 183,517 + ggt Synpcc7942_0185 0.59 -3.6 183,533 - ggt Synpcc7942_0185 0.60 -2.2 183,552 - ggt Synpcc7942_0185 0.61 -0.4 183,592 + ggt Synpcc7942_0185 0.64 +0.5 183,605 - ggt Synpcc7942_0185 0.65 +1.0 183,607 + ggt Synpcc7942_0185 0.65 -0.1 183,612 + ggt Synpcc7942_0185 0.65 -1.4 183,612 + ggt Synpcc7942_0185 0.65 -1.0 183,625 - -0.8 183,646 + ggt Synpcc7942_0185 0.67 -0.8 183,649 - ggt Synpcc7942_0185 0.67 +1.1 183,655 + ggt Synpcc7942_0185 0.68 -1.6 183,659 - ggt Synpcc7942_0185 0.68 +1.1 183,672 - ggt Synpcc7942_0185 0.69 +1.5 183,693 + ggt Synpcc7942_0185 0.70 -4.5 183,703 + ggt Synpcc7942_0185 0.71 +2.1 183,703 + ggt Synpcc7942_0185 0.71 -2.2 183,703 + ggt Synpcc7942_0185 0.71 -1.1 183,711 - ggt Synpcc7942_0185 0.71 -1.5 183,728 - ggt Synpcc7942_0185 0.73 -2.5 183,781 - ggt Synpcc7942_0185 0.76 -2.3 183,791 + ggt Synpcc7942_0185 0.77 -0.6 183,801 + ggt Synpcc7942_0185 0.77 -2.6 183,868 + ggt Synpcc7942_0185 0.82 -1.6 183,872 + ggt Synpcc7942_0185 0.82 -3.0 183,879 - ggt Synpcc7942_0185 0.82 +0.1 183,898 + ggt Synpcc7942_0185 0.84 -1.6 183,905 + ggt Synpcc7942_0185 0.84 -0.1 183,905 + ggt Synpcc7942_0185 0.84 -0.5 183,953 + ggt Synpcc7942_0185 0.87 -0.3 183,966 - ggt Synpcc7942_0185 0.88 -0.5 183,966 - ggt Synpcc7942_0185 0.88 -2.1 183,966 - ggt Synpcc7942_0185 0.88 -1.3 183,970 + ggt Synpcc7942_0185 0.88 -1.6 183,976 + ggt Synpcc7942_0185 0.89 -0.9 183,976 + ggt Synpcc7942_0185 0.89 -2.1 183,976 + ggt Synpcc7942_0185 0.89 -0.9 183,984 - ggt Synpcc7942_0185 0.89 -1.6 183,984 - ggt Synpcc7942_0185 0.89 -0.7 183,993 + ggt Synpcc7942_0185 0.90 -2.6 184,001 - -2.8 184,006 + -1.3 184,006 + -0.6 184,014 - -1.3 184,029 + +0.4 184,029 + -1.8 184,029 + -1.4 184,029 + +0.4 184,029 + +0.3 184,029 + -2.4 184,029 + -0.8 184,029 + -0.2 184,037 - -2.2 184,039 + -0.6 184,039 + -0.6 184,045 + -0.7 184,070 + -0.8 184,103 - +3.0 184,127 + -1.3 184,129 + -2.3 184,152 - -2.6 184,159 - -2.4 184,170 + +0.1 184,170 - -0.3 184,173 - -1.1 184,177 + -1.1 184,178 - +1.8 184,183 - +1.4 184,220 - Synpcc7942_0186 0.24 -1.8 184,292 + Synpcc7942_0186 0.52 -1.3 184,329 + Synpcc7942_0186 0.67 +2.1 184,342 - Synpcc7942_0186 0.72 +1.0 184,343 + Synpcc7942_0186 0.73 -0.8 184,343 + +0.4 184,343 + Synpcc7942_0186 0.73 +1.6 184,343 + Synpcc7942_0186 0.73 +0.4 184,343 + Synpcc7942_0186 0.73 -1.4 184,343 + Synpcc7942_0186 0.73 -0.7 184,351 + Synpcc7942_0186 0.76 -0.8 184,351 - Synpcc7942_0186 0.76 -2.4 184,351 - Synpcc7942_0186 0.76 +0.8 184,351 - Synpcc7942_0186 0.76 -0.6 184,351 - Synpcc7942_0186 0.76 -0.6 184,351 - Synpcc7942_0186 0.76 +0.9 184,351 - +0.0 184,351 - Synpcc7942_0186 0.76 +1.6 184,377 + Synpcc7942_0186 0.86 -0.7 184,386 + -2.8 184,387 + -1.0 184,395 - +1.0 184,395 - -0.7 184,421 + -3.0 184,423 - -1.8 184,455 - -3.4 184,467 - +0.9 184,493 + -0.4 184,527 + Synpcc7942_0187 0.10 +0.9 184,873 + Synpcc7942_0187 0.44 -3.7 184,905 - Synpcc7942_0187 0.47 -2.1 184,944 + Synpcc7942_0187 0.50 -3.0 185,076 - Synpcc7942_0187 0.63 -1.1 185,078 + Synpcc7942_0187 0.63 -2.2 185,275 - Synpcc7942_0187 0.82 -3.5 185,283 - Synpcc7942_0187 0.83 -1.8 185,379 + -0.8 185,428 - -3.3 185,453 + +1.9 185,472 + -1.5 185,480 - -3.0 185,516 - -2.7 185,541 - -1.2 185,567 - -0.8 185,567 - +1.0 185,572 + -0.8 185,588 + +0.2 185,588 + +0.6 185,601 - +1.6 185,645 + -0.6 185,645 + -1.0 185,653 - -1.1 185,671 - -1.1 185,747 - +2.8 185,779 + +3.0 185,779 - -1.6 185,787 - -1.8 185,790 + -3.1 185,792 - +0.1 185,792 - -1.6 185,797 - +2.4 185,798 - +0.4 185,798 - +1.3 185,826 + -0.8 185,859 - Synpcc7942_0188 0.10 -2.4 185,865 + Synpcc7942_0188 0.11 +0.2 185,920 + Synpcc7942_0188 0.14 +0.4 185,923 + Synpcc7942_0188 0.14 -1.1 185,938 - Synpcc7942_0188 0.15 -0.7 185,967 + Synpcc7942_0188 0.16 +1.0 185,967 + Synpcc7942_0188 0.16 +2.5 185,975 - Synpcc7942_0188 0.17 -2.8 185,975 - Synpcc7942_0188 0.17 -1.7 185,975 - Synpcc7942_0188 0.17 -1.4 185,975 - Synpcc7942_0188 0.17 -0.6 185,990 - Synpcc7942_0188 0.18 +0.4 186,037 - Synpcc7942_0188 0.20 +0.3 186,045 + Synpcc7942_0188 0.21 -0.1 186,059 + Synpcc7942_0188 0.22 +1.0 186,059 + Synpcc7942_0188 0.22 -3.5 186,059 + Synpcc7942_0188 0.22 +1.0 186,067 - Synpcc7942_0188 0.22 -0.1 186,068 - Synpcc7942_0188 0.22 +1.8 186,074 - Synpcc7942_0188 0.23 -1.4 186,102 + Synpcc7942_0188 0.24 -1.4 186,152 + Synpcc7942_0188 0.27 -0.0 186,153 + Synpcc7942_0188 0.27 -0.7 186,161 - Synpcc7942_0188 0.28 -0.1 186,167 - Synpcc7942_0188 0.28 -1.6 186,172 - Synpcc7942_0188 0.28 -0.1 186,206 + Synpcc7942_0188 0.30 -1.1 186,218 + Synpcc7942_0188 0.31 -1.3 186,230 + Synpcc7942_0188 0.32 +1.4 186,236 - Synpcc7942_0188 0.32 -1.0 186,237 + Synpcc7942_0188 0.32 -0.4 186,250 - Synpcc7942_0188 0.33 -0.7 186,272 + Synpcc7942_0188 0.34 -0.6 186,272 + Synpcc7942_0188 0.34 +1.2 186,298 - Synpcc7942_0188 0.35 +2.2 186,313 + Synpcc7942_0188 0.36 +1.8 186,364 + Synpcc7942_0188 0.39 +2.4 186,371 - Synpcc7942_0188 0.40 +1.5 186,374 + Synpcc7942_0188 0.40 -0.8 186,382 - Synpcc7942_0188 0.40 -0.3 186,409 + Synpcc7942_0188 0.42 +1.1 186,417 + Synpcc7942_0188 0.42 -1.1 186,417 + Synpcc7942_0188 0.42 -0.7 186,425 - Synpcc7942_0188 0.43 -0.3 186,427 + Synpcc7942_0188 0.43 +0.5 186,427 + Synpcc7942_0188 0.43 +1.7 186,434 + Synpcc7942_0188 0.43 +2.5 186,435 - Synpcc7942_0188 0.43 +0.6 186,450 + Synpcc7942_0188 0.44 -1.4 186,450 + Synpcc7942_0188 0.44 +1.9 186,450 + Synpcc7942_0188 0.44 +0.4
Or see this region's nucleotide sequence