Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0156 and Synpcc7942_0157 are separated by 200 nucleotides Synpcc7942_0157 and moeB are separated by 435 nucleotides
Synpcc7942_0156: Synpcc7942_0156 - phosphoglucomutase, at 157,210 to 158,841
_0156
Synpcc7942_0157: Synpcc7942_0157 - hypothetical protein, at 159,042 to 159,560
_0157
Synpcc7942_0158: moeB - hypothetical protein, at 159,996 to 161,171
moeB
Position (kb) 159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 158.152 kb on + strand, within Synpcc7942_0156 at 158.318 kb on - strand, within Synpcc7942_0156 at 158.339 kb on - strand, within Synpcc7942_0156 at 158.339 kb on - strand, within Synpcc7942_0156 at 158.574 kb on + strand, within Synpcc7942_0156 at 158.609 kb on + strand, within Synpcc7942_0156 at 158.696 kb on + strand at 158.702 kb on + strand at 158.781 kb on + strand at 158.845 kb on + strand at 158.863 kb on + strand at 158.863 kb on + strand at 158.871 kb on - strand at 158.871 kb on - strand at 158.898 kb on - strand at 158.968 kb on + strand at 158.985 kb on - strand at 159.034 kb on - strand at 159.034 kb on - strand at 159.034 kb on - strand at 159.038 kb on + strand at 159.046 kb on - strand at 159.046 kb on - strand at 159.048 kb on + strand at 159.050 kb on + strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.072 kb on + strand at 159.101 kb on - strand, within Synpcc7942_0157 at 159.115 kb on - strand, within Synpcc7942_0157 at 159.126 kb on - strand, within Synpcc7942_0157 at 159.153 kb on - strand, within Synpcc7942_0157 at 159.163 kb on - strand, within Synpcc7942_0157 at 159.182 kb on - strand, within Synpcc7942_0157 at 159.186 kb on + strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.196 kb on + strand, within Synpcc7942_0157 at 159.219 kb on + strand, within Synpcc7942_0157 at 159.244 kb on - strand, within Synpcc7942_0157 at 159.286 kb on - strand, within Synpcc7942_0157 at 159.317 kb on + strand, within Synpcc7942_0157 at 159.374 kb on + strand, within Synpcc7942_0157 at 159.392 kb on - strand, within Synpcc7942_0157 at 159.398 kb on - strand, within Synpcc7942_0157 at 159.404 kb on + strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.439 kb on + strand, within Synpcc7942_0157 at 159.461 kb on + strand, within Synpcc7942_0157 at 159.478 kb on - strand, within Synpcc7942_0157 at 159.486 kb on + strand, within Synpcc7942_0157 at 159.486 kb on + strand, within Synpcc7942_0157 at 159.494 kb on - strand, within Synpcc7942_0157 at 159.506 kb on + strand, within Synpcc7942_0157 at 159.506 kb on + strand, within Synpcc7942_0157 at 159.514 kb on - strand at 159.514 kb on - strand at 159.517 kb on - strand at 159.544 kb on - strand at 159.560 kb on + strand at 159.568 kb on + strand at 159.655 kb on + strand at 159.666 kb on + strand at 159.674 kb on - strand at 159.684 kb on - strand at 159.751 kb on - strand at 159.753 kb on - strand at 159.758 kb on - strand at 159.826 kb on + strand at 159.826 kb on + strand at 159.895 kb on + strand at 159.897 kb on + strand at 159.897 kb on + strand at 159.905 kb on - strand at 159.905 kb on - strand at 159.932 kb on + strand at 159.932 kb on + strand at 159.938 kb on - strand at 159.940 kb on - strand at 159.940 kb on - strand at 159.979 kb on - strand at 159.987 kb on + strand at 160.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 158,152 + Synpcc7942_0156 0.58 -1.2 158,318 - Synpcc7942_0156 0.68 -1.4 158,339 - Synpcc7942_0156 0.69 -1.9 158,339 - Synpcc7942_0156 0.69 -0.1 158,574 + Synpcc7942_0156 0.84 -1.7 158,609 + Synpcc7942_0156 0.86 -1.5 158,696 + -2.4 158,702 + -0.9 158,781 + -1.9 158,845 + +0.4 158,863 + +1.9 158,863 + +0.9 158,871 - -0.0 158,871 - +0.8 158,898 - -2.3 158,968 + +0.1 158,985 - -0.9 159,034 - -0.7 159,034 - +0.6 159,034 - -0.9 159,038 + -0.0 159,046 - -2.3 159,046 - +2.0 159,048 + +0.6 159,050 + -0.5 159,056 - -0.1 159,056 - -2.0 159,056 - -0.2 159,056 - -1.3 159,072 + +0.4 159,101 - Synpcc7942_0157 0.11 -1.0 159,115 - Synpcc7942_0157 0.14 -2.7 159,126 - Synpcc7942_0157 0.16 -2.6 159,153 - Synpcc7942_0157 0.21 -0.2 159,163 - Synpcc7942_0157 0.23 -0.2 159,182 - Synpcc7942_0157 0.27 -0.1 159,186 + Synpcc7942_0157 0.28 -2.0 159,194 - Synpcc7942_0157 0.29 -0.9 159,194 - Synpcc7942_0157 0.29 -1.7 159,194 - Synpcc7942_0157 0.29 -1.0 159,194 - Synpcc7942_0157 0.29 -2.6 159,196 + Synpcc7942_0157 0.30 -2.7 159,219 + Synpcc7942_0157 0.34 -0.6 159,244 - Synpcc7942_0157 0.39 +2.7 159,286 - Synpcc7942_0157 0.47 +1.1 159,317 + Synpcc7942_0157 0.53 -1.4 159,374 + Synpcc7942_0157 0.64 -0.8 159,392 - Synpcc7942_0157 0.67 -2.9 159,398 - Synpcc7942_0157 0.69 -1.9 159,404 + Synpcc7942_0157 0.70 -2.4 159,417 - Synpcc7942_0157 0.72 -4.0 159,417 - Synpcc7942_0157 0.72 -0.7 159,417 - Synpcc7942_0157 0.72 -1.9 159,439 + Synpcc7942_0157 0.76 -0.2 159,461 + Synpcc7942_0157 0.81 +3.7 159,478 - Synpcc7942_0157 0.84 -1.4 159,486 + Synpcc7942_0157 0.86 -2.1 159,486 + Synpcc7942_0157 0.86 -0.3 159,494 - Synpcc7942_0157 0.87 -0.8 159,506 + Synpcc7942_0157 0.89 -3.2 159,506 + Synpcc7942_0157 0.89 -2.6 159,514 - +0.4 159,514 - -2.2 159,517 - -1.5 159,544 - -3.1 159,560 + +1.4 159,568 + -2.8 159,655 + +2.0 159,666 + +0.4 159,674 - -0.7 159,684 - -1.6 159,751 - -1.4 159,753 - +0.5 159,758 - +2.2 159,826 + +2.3 159,826 + -3.2 159,895 + -1.5 159,897 + +2.8 159,897 + +1.8 159,905 - -0.9 159,905 - +1.3 159,932 + -2.8 159,932 + -0.2 159,938 - -1.1 159,940 - +1.3 159,940 - +0.9 159,979 - -2.2 159,987 + +2.0 160,002 - +0.3
Or see this region's nucleotide sequence