Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0153 and Synpcc7942_0154 are separated by 32 nucleotides Synpcc7942_0154 and Synpcc7942_0155 overlap by 4 nucleotides Synpcc7942_0155 and Synpcc7942_0156 are separated by 25 nucleotides Synpcc7942_0156 and Synpcc7942_0157 are separated by 200 nucleotides
Synpcc7942_0153: Synpcc7942_0153 - hypothetical protein, at 156,026 to 156,307
_0153
Synpcc7942_0154: Synpcc7942_0154 - hypothetical protein, at 156,340 to 156,957
_0154
Synpcc7942_0155: Synpcc7942_0155 - hypothetical protein, at 156,954 to 157,184
_0155
Synpcc7942_0156: Synpcc7942_0156 - phosphoglucomutase, at 157,210 to 158,841
_0156
Synpcc7942_0157: Synpcc7942_0157 - hypothetical protein, at 159,042 to 159,560
_0157
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 156.332 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.366 kb on - strand at 156.410 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.431 kb on + strand, within Synpcc7942_0154 at 156.434 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.439 kb on - strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.449 kb on + strand, within Synpcc7942_0154 at 156.470 kb on + strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.512 kb on - strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.525 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.539 kb on + strand, within Synpcc7942_0154 at 156.549 kb on + strand, within Synpcc7942_0154 at 156.569 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.571 kb on - strand, within Synpcc7942_0154 at 156.572 kb on + strand, within Synpcc7942_0154 at 156.576 kb on - strand, within Synpcc7942_0154 at 156.590 kb on - strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.599 kb on + strand, within Synpcc7942_0154 at 156.607 kb on - strand, within Synpcc7942_0154 at 156.629 kb on + strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.637 kb on - strand, within Synpcc7942_0154 at 156.657 kb on - strand, within Synpcc7942_0154 at 156.659 kb on - strand, within Synpcc7942_0154 at 156.661 kb on + strand, within Synpcc7942_0154 at 156.692 kb on - strand, within Synpcc7942_0154 at 156.719 kb on + strand, within Synpcc7942_0154 at 156.758 kb on - strand, within Synpcc7942_0154 at 156.782 kb on - strand, within Synpcc7942_0154 at 156.851 kb on - strand, within Synpcc7942_0154 at 156.857 kb on + strand, within Synpcc7942_0154 at 156.867 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.878 kb on + strand, within Synpcc7942_0154 at 156.904 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.933 kb on + strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.941 kb on - strand at 156.963 kb on + strand at 156.976 kb on - strand at 156.989 kb on - strand, within Synpcc7942_0155 at 156.992 kb on + strand, within Synpcc7942_0155 at 157.004 kb on + strand, within Synpcc7942_0155 at 157.020 kb on - strand, within Synpcc7942_0155 at 157.087 kb on - strand, within Synpcc7942_0155 at 157.109 kb on + strand, within Synpcc7942_0155 at 157.109 kb on + strand, within Synpcc7942_0155 at 157.117 kb on - strand, within Synpcc7942_0155 at 157.159 kb on - strand, within Synpcc7942_0155 at 157.178 kb on + strand at 157.178 kb on + strand at 157.184 kb on + strand at 157.207 kb on + strand at 157.214 kb on - strand at 157.248 kb on - strand at 157.255 kb on - strand at 157.317 kb on + strand at 157.512 kb on + strand, within Synpcc7942_0156 at 157.527 kb on + strand, within Synpcc7942_0156 at 157.625 kb on - strand, within Synpcc7942_0156 at 157.630 kb on + strand, within Synpcc7942_0156 at 157.700 kb on + strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.737 kb on - strand, within Synpcc7942_0156 at 157.829 kb on + strand, within Synpcc7942_0156 at 157.870 kb on + strand, within Synpcc7942_0156 at 157.882 kb on - strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.889 kb on + strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.897 kb on - strand, within Synpcc7942_0156 at 157.907 kb on - strand, within Synpcc7942_0156 at 158.152 kb on + strand, within Synpcc7942_0156 at 158.318 kb on - strand, within Synpcc7942_0156 at 158.339 kb on - strand, within Synpcc7942_0156 at 158.339 kb on - strand, within Synpcc7942_0156 at 158.574 kb on + strand, within Synpcc7942_0156 at 158.609 kb on + strand, within Synpcc7942_0156 at 158.696 kb on + strand at 158.702 kb on + strand at 158.781 kb on + strand at 158.845 kb on + strand at 158.863 kb on + strand at 158.863 kb on + strand at 158.871 kb on - strand at 158.871 kb on - strand at 158.898 kb on - strand at 158.968 kb on + strand at 158.985 kb on - strand at 159.034 kb on - strand at 159.034 kb on - strand at 159.034 kb on - strand at 159.038 kb on + strand at 159.046 kb on - strand at 159.046 kb on - strand at 159.048 kb on + strand at 159.050 kb on + strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.056 kb on - strand at 159.072 kb on + strand at 159.101 kb on - strand, within Synpcc7942_0157 at 159.115 kb on - strand, within Synpcc7942_0157 at 159.126 kb on - strand, within Synpcc7942_0157 at 159.153 kb on - strand, within Synpcc7942_0157 at 159.163 kb on - strand, within Synpcc7942_0157 at 159.182 kb on - strand, within Synpcc7942_0157 at 159.186 kb on + strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.194 kb on - strand, within Synpcc7942_0157 at 159.196 kb on + strand, within Synpcc7942_0157 at 159.219 kb on + strand, within Synpcc7942_0157 at 159.244 kb on - strand, within Synpcc7942_0157 at 159.286 kb on - strand, within Synpcc7942_0157 at 159.317 kb on + strand, within Synpcc7942_0157 at 159.374 kb on + strand, within Synpcc7942_0157 at 159.392 kb on - strand, within Synpcc7942_0157 at 159.398 kb on - strand, within Synpcc7942_0157 at 159.404 kb on + strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.417 kb on - strand, within Synpcc7942_0157 at 159.439 kb on + strand, within Synpcc7942_0157 at 159.461 kb on + strand, within Synpcc7942_0157 at 159.478 kb on - strand, within Synpcc7942_0157 at 159.486 kb on + strand, within Synpcc7942_0157 at 159.486 kb on + strand, within Synpcc7942_0157 at 159.494 kb on - strand, within Synpcc7942_0157 at 159.506 kb on + strand, within Synpcc7942_0157 at 159.506 kb on + strand, within Synpcc7942_0157 at 159.514 kb on - strand at 159.514 kb on - strand at 159.517 kb on - strand at 159.544 kb on - strand at 159.560 kb on + strand at 159.568 kb on + strand at 159.655 kb on + strand at 159.666 kb on + strand at 159.674 kb on - strand at 159.684 kb on - strand at 159.751 kb on - strand at 159.753 kb on - strand at 159.758 kb on - strand at 159.826 kb on + strand at 159.826 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 156,332 - -2.5 156,366 - +2.1 156,366 - +3.7 156,366 - +0.2 156,366 - +0.9 156,410 + Synpcc7942_0154 0.11 -1.1 156,431 + Synpcc7942_0154 0.15 +2.9 156,431 + Synpcc7942_0154 0.15 +1.9 156,434 - Synpcc7942_0154 0.15 +2.4 156,439 - Synpcc7942_0154 0.16 +1.2 156,439 - Synpcc7942_0154 0.16 +6.3 156,439 - Synpcc7942_0154 0.16 +3.6 156,449 + Synpcc7942_0154 0.18 -2.2 156,449 + Synpcc7942_0154 0.18 +3.1 156,470 + Synpcc7942_0154 0.21 +1.8 156,512 - Synpcc7942_0154 0.28 +3.4 156,512 - Synpcc7942_0154 0.28 +1.4 156,525 + Synpcc7942_0154 0.30 +1.6 156,525 + Synpcc7942_0154 0.30 +2.4 156,539 + Synpcc7942_0154 0.32 +1.8 156,539 + Synpcc7942_0154 0.32 +4.6 156,539 + Synpcc7942_0154 0.32 +1.1 156,549 + Synpcc7942_0154 0.34 +2.1 156,569 - Synpcc7942_0154 0.37 +0.6 156,571 - Synpcc7942_0154 0.37 +1.7 156,571 - Synpcc7942_0154 0.37 +1.9 156,572 + Synpcc7942_0154 0.38 +2.9 156,576 - Synpcc7942_0154 0.38 -1.0 156,590 - Synpcc7942_0154 0.40 +2.5 156,599 + Synpcc7942_0154 0.42 +3.8 156,599 + Synpcc7942_0154 0.42 +4.0 156,599 + Synpcc7942_0154 0.42 +4.4 156,607 - Synpcc7942_0154 0.43 +1.9 156,629 + Synpcc7942_0154 0.47 +2.4 156,637 - Synpcc7942_0154 0.48 +2.1 156,637 - Synpcc7942_0154 0.48 +3.5 156,657 - Synpcc7942_0154 0.51 +0.8 156,659 - Synpcc7942_0154 0.52 -1.5 156,661 + Synpcc7942_0154 0.52 +1.6 156,692 - Synpcc7942_0154 0.57 -0.1 156,719 + Synpcc7942_0154 0.61 +2.2 156,758 - Synpcc7942_0154 0.68 +2.4 156,782 - Synpcc7942_0154 0.72 +2.8 156,851 - Synpcc7942_0154 0.83 +1.9 156,857 + Synpcc7942_0154 0.84 -0.6 156,867 + Synpcc7942_0154 0.85 -1.2 156,878 + Synpcc7942_0154 0.87 -0.6 156,878 + Synpcc7942_0154 0.87 +0.1 156,904 + +0.9 156,933 + +0.2 156,933 + -0.3 156,933 + -0.8 156,941 - -1.1 156,941 - +2.1 156,941 - -1.4 156,963 + +1.5 156,976 - +1.7 156,989 - Synpcc7942_0155 0.15 +2.4 156,992 + Synpcc7942_0155 0.16 -1.5 157,004 + Synpcc7942_0155 0.22 +3.1 157,020 - Synpcc7942_0155 0.29 +0.5 157,087 - Synpcc7942_0155 0.58 -0.4 157,109 + Synpcc7942_0155 0.67 +1.9 157,109 + Synpcc7942_0155 0.67 -1.1 157,117 - Synpcc7942_0155 0.71 -0.5 157,159 - Synpcc7942_0155 0.89 +0.0 157,178 + -2.2 157,178 + +1.2 157,184 + +0.1 157,207 + +2.5 157,214 - +3.1 157,248 - -2.0 157,255 - -1.9 157,317 + -1.4 157,512 + Synpcc7942_0156 0.19 -0.9 157,527 + Synpcc7942_0156 0.19 -1.7 157,625 - Synpcc7942_0156 0.25 +0.1 157,630 + Synpcc7942_0156 0.26 -2.4 157,700 + Synpcc7942_0156 0.30 -2.9 157,737 - Synpcc7942_0156 0.32 -2.9 157,737 - Synpcc7942_0156 0.32 -2.9 157,737 - Synpcc7942_0156 0.32 -2.8 157,829 + Synpcc7942_0156 0.38 -4.4 157,870 + Synpcc7942_0156 0.40 -3.3 157,882 - Synpcc7942_0156 0.41 -1.2 157,889 + Synpcc7942_0156 0.42 +2.0 157,889 + Synpcc7942_0156 0.42 -2.5 157,889 + Synpcc7942_0156 0.42 -3.2 157,897 - Synpcc7942_0156 0.42 -1.7 157,897 - Synpcc7942_0156 0.42 -1.5 157,897 - Synpcc7942_0156 0.42 -3.6 157,907 - Synpcc7942_0156 0.43 -0.2 158,152 + Synpcc7942_0156 0.58 -1.2 158,318 - Synpcc7942_0156 0.68 -1.4 158,339 - Synpcc7942_0156 0.69 -1.9 158,339 - Synpcc7942_0156 0.69 -0.1 158,574 + Synpcc7942_0156 0.84 -1.7 158,609 + Synpcc7942_0156 0.86 -1.5 158,696 + -2.4 158,702 + -0.9 158,781 + -1.9 158,845 + +0.4 158,863 + +1.9 158,863 + +0.9 158,871 - -0.0 158,871 - +0.8 158,898 - -2.3 158,968 + +0.1 158,985 - -0.9 159,034 - -0.7 159,034 - +0.6 159,034 - -0.9 159,038 + -0.0 159,046 - -2.3 159,046 - +2.0 159,048 + +0.6 159,050 + -0.5 159,056 - -0.1 159,056 - -2.0 159,056 - -0.2 159,056 - -1.3 159,072 + +0.4 159,101 - Synpcc7942_0157 0.11 -1.0 159,115 - Synpcc7942_0157 0.14 -2.7 159,126 - Synpcc7942_0157 0.16 -2.6 159,153 - Synpcc7942_0157 0.21 -0.2 159,163 - Synpcc7942_0157 0.23 -0.2 159,182 - Synpcc7942_0157 0.27 -0.1 159,186 + Synpcc7942_0157 0.28 -2.0 159,194 - Synpcc7942_0157 0.29 -0.9 159,194 - Synpcc7942_0157 0.29 -1.7 159,194 - Synpcc7942_0157 0.29 -1.0 159,194 - Synpcc7942_0157 0.29 -2.6 159,196 + Synpcc7942_0157 0.30 -2.7 159,219 + Synpcc7942_0157 0.34 -0.6 159,244 - Synpcc7942_0157 0.39 +2.7 159,286 - Synpcc7942_0157 0.47 +1.1 159,317 + Synpcc7942_0157 0.53 -1.4 159,374 + Synpcc7942_0157 0.64 -0.8 159,392 - Synpcc7942_0157 0.67 -2.9 159,398 - Synpcc7942_0157 0.69 -1.9 159,404 + Synpcc7942_0157 0.70 -2.4 159,417 - Synpcc7942_0157 0.72 -4.0 159,417 - Synpcc7942_0157 0.72 -0.7 159,417 - Synpcc7942_0157 0.72 -1.9 159,439 + Synpcc7942_0157 0.76 -0.2 159,461 + Synpcc7942_0157 0.81 +3.7 159,478 - Synpcc7942_0157 0.84 -1.4 159,486 + Synpcc7942_0157 0.86 -2.1 159,486 + Synpcc7942_0157 0.86 -0.3 159,494 - Synpcc7942_0157 0.87 -0.8 159,506 + Synpcc7942_0157 0.89 -3.2 159,506 + Synpcc7942_0157 0.89 -2.6 159,514 - +0.4 159,514 - -2.2 159,517 - -1.5 159,544 - -3.1 159,560 + +1.4 159,568 + -2.8 159,655 + +2.0 159,666 + +0.4 159,674 - -0.7 159,684 - -1.6 159,751 - -1.4 159,753 - +0.5 159,758 - +2.2 159,826 + +2.3 159,826 + -3.2
Or see this region's nucleotide sequence